Moulin L, Munive A, Dreyfus B, Boivin-Masson C (2001) Nodulation
of legumes by members of the β-subclass of Proteobacteria. Nature
411:948–950
Mousson L, Zouache K, Arias-Goeta C, Raquin V, Mavingui P,
Failloux AB (2012) The native Wolbachia symbionts limit transmission of dengue virus in Aedes albopictus. PLoS Negl Trop Dis 6:
e1989
Mouttaki H, Nanny MA, McInerney MJ (2007) Cyclohexane carboxylate and benzoate formation from crotonate in Syntrophus
aciditrophicus. Appl Environ Microbiol 73:930–938
Mukerji KG, Chamola BP, Singh J (2000) Mycorrhizal biology.
Kluwer Academic Publishers, New York
Murray CJL et al (2012) Global malaria mortality between 1980 and
2010: a systematic analysis. Lancet 379:413–431
Nagase N, Sasaki A, Yamashita K, Shimizu A, Wakita Y, Kitai S,
Kawano J (2002) Isolation and species distribution of staphylococci
from animal and human skin. J Vet Med Sci 63:245–250
Nardon P, Charles P (2001) Morphological aspects of symbiosis. In:
Seckbach J (ed) Symbiosis. Kluwer Academic Publishers,
Dordrecht
Nelson DC, Fisher CR (1995) Chemoautotrophic and methanotrophic
endosymbiontic bacteria at deep-sea vents and seeps. In: Karl DM
(ed) Microbiology of deep-sea hydrothermal vents. CRC Press,
Boca Raton, pp 125–167
Nguyen C (2003) Rhizodeposition of organic C by plants: mechanisms
and controls. Agronomie 23:375–396
Noble WC (1993) The skin microflora and microbial skin disease.
Cambridge University Press, Cambridge
Normand P et al (2007) Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Res 17:7–15
Novotny V, Basset Y, Miller SE, Weiblen GD, Bremer B, Ciezk L,
Drozd P (2002) Low host specificity herbivor insect in tropical
forest. Nature 416:841–844
Nyholm SV, McFall-Ngai MJ (2004) The winnowing: establishing the
squid-vibrio symbiosis. Nat Rev Microbiol 2:632–642
Ochman H, Wilson AC (1987) Evolution in bacteria: evidence for a
universal substitution rate in cellular genomes. J Mol Evol 26:74–86
Odum EP (1971) Fundamentals of ecology. Saunders, Philadelphia
Oerke EC, Dehne HW, Schohnbeck F, Weber A (1995) Crop production and crop protection: estimated losses in major food and cash
crops. Elsevier, Amsterdam/New York
Ofek I, Hasty DL, Doyle RJ (2003) Bacterial adhesion to animal cells
and tissues. ASM Press, Washington, DC, 416 p
Oldroyd GE (2007) Nodules and hormones. Science 315:52–53
Oldroyd GE, Downie JA (2006) Nuclear calcium changes at the core of
symbiosis signalling. Curr Opin Plant Biol 9:351–357
Olivain C, Humbert C, Nahalkova J, Fatehi J, L’Haridon F,
Alabouvette C (2006) Colonization of tomato root by pathogenic
and nonpathogenic Fusarium oxysporum strains inoculated together
and separately into the soil. Appl Environ Microbiol 72:1523–1531
Oliver KM, Russell JA, Moran NA, Hunter MS (2003) Facultative
bacterial symbionts in aphids confer resistance to parasitic wasps.
Proc Natl Acad Sci U S A 100:1803–1807
Osborne LE, Stein JM (2007) Epidemiology of Fusarium head blight on
small-grain cereals. Int J Food Microbiol 119:103–108
Ouwehand AC, Salminen S, Isolauri E (2002) Probiotics: an overview
of beneficial effects. Anton Leeuw Int J G 82:279–289
Pancholi V, Chhatwal GS (2003) Housekeeping enzymes as virulence
factors for pathogens. Int J Med Microbiol 293:391–401
Pannebakker B, Loppin B, Elemans CP, Humblot L, Vavre F (2007)
Parasitic inhibition of cell death facilitates symbiosis. Proc Natl
Acad Sci U S A 104:213–215
Parsot C, Sansonetti PJ (1999) The virulence plasmid of Shigellae: an
archipelago of pathogenicity island? In: Kaper JB, Hacker J (eds)
Pathogenicity islands and other mobile virulence elements. ASM
Press, Washington, DC, pp 151–165
Partida-Martinez LP, Hertweck C (2005) Pathogenic fungus harbours
endosymbiotic bacteria for toxin production. Nature 437:884–888
Patra AK et al (2006) Effects of management regime and plant species
on the enzyme activity and genetic structure of N-fixing,
denitrifying and nitrifying bacterial communities in grassland
soils. Environ Microbiol 8:1005–1016
Patra AK, Le Roux X, Abbadie L, Clays-Josserand A, Poly F, Loiseau
P, Louault F (2007) Effect of microbial activity and nitrogen mineralization on free-living nitrogen fixation in permanent grassland
soils. J Agron Crop Sci 193:153–156
Pel MJC, Pieterse CMJ (2013) Microbial recognition and evasion of
host immunity. J Exp Bot 64:1237–1248
Persson L, Larsson-Wikstrom M, Gerhardson B (1999) Assessment of
soil suppressiveness to Aphanomyces root rot of pea. Plant Dis
83:1108–1112
Picard C, Bosco M (2006) Heterozygosis drives maize hybrids to select
elite 2,4-diacetylphloroglucinol-producing Pseudomonas strains
among resident soil populations. FEMS Microbiol Ecol 58:193–204
Popa O, Dagan T (2011) Trends and barriers to lateral gene transfer in
prokaryotes. Curr Opin Microbiol 14:615–623
Prin Y, Duhoux E, Diem H, Roederer Y, Dommergues Y (1991) Aerial
nodules in Casuarina cunninghamiana. Appl Environ Microbiol
57:871–874
Raaijmakers JM, Weller DM (1998) Natural plant protection by 2,4diacetylphloroglucinol-producing Pseudomonas spp. in take-all
decline soils. Mol Plant Microbe Interact 11:144–152
Raaijmakers JM, Paulitz TC, Alabouvette C, Steinberg C, Moe ¨nneLoccoz Y (2009) The rhizosphere: a playground and battlefield for
soilborne pathogens and beneficial microorganisms. Plant Soil
321:341–361
Ramette A, Tiedje JM (2007) Biogeography: an emerging cornerstone
for understanding prokaryotic diversity, ecology, and evolution.
Microb Ecol 53:197–207
Ramey BE, Koutsoudis M, von Bodman SB, Fuqua C (2004) Biofilm
formation in plant-microbe associations. Curr Opin Microbiol
7:602–609
Rance `s E, Voronin D, Tran-Van V, Mavingui P (2008) Genetic and
functional characterization of the type IV secretion system in
Wolbachia. J Bacteriol 190:5020–5030
Reinhardt D (2007) Programming good relations – development of the
arbuscular mycorrhizal symbiosis. Curr Opin Plant Biol 10:98–105
Remans R, Spaepen S, Vanderleyden J (2006) Auxin signaling in plant
defense. Science 313:171
Rentz JA, Alvarez PJJ, Schnoor JL (2005) Benzo[a]pyrene cometabolism in the presence of plant root extracts and exudates:
implications for phytoremediation. Environ Pollut 136:477–484
Rep M, Meijer M, Houterman PM, van der Does HC, Cornelissen BJC
(2005) Fusarium oxysporum evades I-3-mediated resistance without altering the matching avirulence gene. Mol Plant Microbe
Interact 18:15–23
Rezzonico F, Binder C, De ´fago G, Moe ¨nne-Loccoz Y (2005) The type
III secretion system of biocontrol Pseudomonas fluorescens KD
targets the phytopathogenic Chromista Pythium ultimum and
promotes cucumber protection. Mol Plant Microbe Interact
18:991–1001
Roger PA, Zimmerman WJ, Lumpkin TA (1993) Microbiological
management of wetland rice fields. In: Metting B (ed) Soil microbial ecology: applications in agricultural and environmental management. Marcel Dekker Inc., New York, pp 417–455
442
Y. Moe ¨nne-Loccoz et al.
of legumes by members of the β-subclass of Proteobacteria. Nature
411:948–950
Mousson L, Zouache K, Arias-Goeta C, Raquin V, Mavingui P,
Failloux AB (2012) The native Wolbachia symbionts limit transmission of dengue virus in Aedes albopictus. PLoS Negl Trop Dis 6:
e1989
Mouttaki H, Nanny MA, McInerney MJ (2007) Cyclohexane carboxylate and benzoate formation from crotonate in Syntrophus
aciditrophicus. Appl Environ Microbiol 73:930–938
Mukerji KG, Chamola BP, Singh J (2000) Mycorrhizal biology.
Kluwer Academic Publishers, New York
Murray CJL et al (2012) Global malaria mortality between 1980 and
2010: a systematic analysis. Lancet 379:413–431
Nagase N, Sasaki A, Yamashita K, Shimizu A, Wakita Y, Kitai S,
Kawano J (2002) Isolation and species distribution of staphylococci
from animal and human skin. J Vet Med Sci 63:245–250
Nardon P, Charles P (2001) Morphological aspects of symbiosis. In:
Seckbach J (ed) Symbiosis. Kluwer Academic Publishers,
Dordrecht
Nelson DC, Fisher CR (1995) Chemoautotrophic and methanotrophic
endosymbiontic bacteria at deep-sea vents and seeps. In: Karl DM
(ed) Microbiology of deep-sea hydrothermal vents. CRC Press,
Boca Raton, pp 125–167
Nguyen C (2003) Rhizodeposition of organic C by plants: mechanisms
and controls. Agronomie 23:375–396
Noble WC (1993) The skin microflora and microbial skin disease.
Cambridge University Press, Cambridge
Normand P et al (2007) Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Res 17:7–15
Novotny V, Basset Y, Miller SE, Weiblen GD, Bremer B, Ciezk L,
Drozd P (2002) Low host specificity herbivor insect in tropical
forest. Nature 416:841–844
Nyholm SV, McFall-Ngai MJ (2004) The winnowing: establishing the
squid-vibrio symbiosis. Nat Rev Microbiol 2:632–642
Ochman H, Wilson AC (1987) Evolution in bacteria: evidence for a
universal substitution rate in cellular genomes. J Mol Evol 26:74–86
Odum EP (1971) Fundamentals of ecology. Saunders, Philadelphia
Oerke EC, Dehne HW, Schohnbeck F, Weber A (1995) Crop production and crop protection: estimated losses in major food and cash
crops. Elsevier, Amsterdam/New York
Ofek I, Hasty DL, Doyle RJ (2003) Bacterial adhesion to animal cells
and tissues. ASM Press, Washington, DC, 416 p
Oldroyd GE (2007) Nodules and hormones. Science 315:52–53
Oldroyd GE, Downie JA (2006) Nuclear calcium changes at the core of
symbiosis signalling. Curr Opin Plant Biol 9:351–357
Olivain C, Humbert C, Nahalkova J, Fatehi J, L’Haridon F,
Alabouvette C (2006) Colonization of tomato root by pathogenic
and nonpathogenic Fusarium oxysporum strains inoculated together
and separately into the soil. Appl Environ Microbiol 72:1523–1531
Oliver KM, Russell JA, Moran NA, Hunter MS (2003) Facultative
bacterial symbionts in aphids confer resistance to parasitic wasps.
Proc Natl Acad Sci U S A 100:1803–1807
Osborne LE, Stein JM (2007) Epidemiology of Fusarium head blight on
small-grain cereals. Int J Food Microbiol 119:103–108
Ouwehand AC, Salminen S, Isolauri E (2002) Probiotics: an overview
of beneficial effects. Anton Leeuw Int J G 82:279–289
Pancholi V, Chhatwal GS (2003) Housekeeping enzymes as virulence
factors for pathogens. Int J Med Microbiol 293:391–401
Pannebakker B, Loppin B, Elemans CP, Humblot L, Vavre F (2007)
Parasitic inhibition of cell death facilitates symbiosis. Proc Natl
Acad Sci U S A 104:213–215
Parsot C, Sansonetti PJ (1999) The virulence plasmid of Shigellae: an
archipelago of pathogenicity island? In: Kaper JB, Hacker J (eds)
Pathogenicity islands and other mobile virulence elements. ASM
Press, Washington, DC, pp 151–165
Partida-Martinez LP, Hertweck C (2005) Pathogenic fungus harbours
endosymbiotic bacteria for toxin production. Nature 437:884–888
Patra AK et al (2006) Effects of management regime and plant species
on the enzyme activity and genetic structure of N-fixing,
denitrifying and nitrifying bacterial communities in grassland
soils. Environ Microbiol 8:1005–1016
Patra AK, Le Roux X, Abbadie L, Clays-Josserand A, Poly F, Loiseau
P, Louault F (2007) Effect of microbial activity and nitrogen mineralization on free-living nitrogen fixation in permanent grassland
soils. J Agron Crop Sci 193:153–156
Pel MJC, Pieterse CMJ (2013) Microbial recognition and evasion of
host immunity. J Exp Bot 64:1237–1248
Persson L, Larsson-Wikstrom M, Gerhardson B (1999) Assessment of
soil suppressiveness to Aphanomyces root rot of pea. Plant Dis
83:1108–1112
Picard C, Bosco M (2006) Heterozygosis drives maize hybrids to select
elite 2,4-diacetylphloroglucinol-producing Pseudomonas strains
among resident soil populations. FEMS Microbiol Ecol 58:193–204
Popa O, Dagan T (2011) Trends and barriers to lateral gene transfer in
prokaryotes. Curr Opin Microbiol 14:615–623
Prin Y, Duhoux E, Diem H, Roederer Y, Dommergues Y (1991) Aerial
nodules in Casuarina cunninghamiana. Appl Environ Microbiol
57:871–874
Raaijmakers JM, Weller DM (1998) Natural plant protection by 2,4diacetylphloroglucinol-producing Pseudomonas spp. in take-all
decline soils. Mol Plant Microbe Interact 11:144–152
Raaijmakers JM, Paulitz TC, Alabouvette C, Steinberg C, Moe ¨nneLoccoz Y (2009) The rhizosphere: a playground and battlefield for
soilborne pathogens and beneficial microorganisms. Plant Soil
321:341–361
Ramette A, Tiedje JM (2007) Biogeography: an emerging cornerstone
for understanding prokaryotic diversity, ecology, and evolution.
Microb Ecol 53:197–207
Ramey BE, Koutsoudis M, von Bodman SB, Fuqua C (2004) Biofilm
formation in plant-microbe associations. Curr Opin Microbiol
7:602–609
Rance `s E, Voronin D, Tran-Van V, Mavingui P (2008) Genetic and
functional characterization of the type IV secretion system in
Wolbachia. J Bacteriol 190:5020–5030
Reinhardt D (2007) Programming good relations – development of the
arbuscular mycorrhizal symbiosis. Curr Opin Plant Biol 10:98–105
Remans R, Spaepen S, Vanderleyden J (2006) Auxin signaling in plant
defense. Science 313:171
Rentz JA, Alvarez PJJ, Schnoor JL (2005) Benzo[a]pyrene cometabolism in the presence of plant root extracts and exudates:
implications for phytoremediation. Environ Pollut 136:477–484
Rep M, Meijer M, Houterman PM, van der Does HC, Cornelissen BJC
(2005) Fusarium oxysporum evades I-3-mediated resistance without altering the matching avirulence gene. Mol Plant Microbe
Interact 18:15–23
Rezzonico F, Binder C, De ´fago G, Moe ¨nne-Loccoz Y (2005) The type
III secretion system of biocontrol Pseudomonas fluorescens KD
targets the phytopathogenic Chromista Pythium ultimum and
promotes cucumber protection. Mol Plant Microbe Interact
18:991–1001
Roger PA, Zimmerman WJ, Lumpkin TA (1993) Microbiological
management of wetland rice fields. In: Metting B (ed) Soil microbial ecology: applications in agricultural and environmental management. Marcel Dekker Inc., New York, pp 417–455
442
Y. Moe ¨nne-Loccoz et al.