Klasson L et al (2008) Genome evolution of Wolbachia strain wPip
from Culex pipientis group. Mol Biol Evol 25:1877–1887
Klasson L, Kambris Z, Cook PE, Walker T, Sinkins SP (2009) Horizontal gene transfer between Wolbachia and the mosquito Aedes
aegypti. BMC Genomics 10:33
Krimi Z, Petit A, Mougel C, Dessaux Y, Nesme X (2002) Seasonal
fluctuations and long-term persistence of pathogenic populations of
Agrobacterium spp. in soils. Appl Environ Microbiol 68:3358–3365
Kyselkova ´ M, Kopecky ´ J, Frapolli M, De ´fago G, Sa ´gova ´-Marec ˇkova ´
M, Grundmann GL, Moe ¨nne-Loccoz Y (2009) Comparison of
rhizobacterial community composition in soil suppressive or
conducive to tobacco black root rot disease. ISME J 3:1127–1138
Leben C (1988) Relative humidity and the survival of epiphytic bacteria with buds and leaves of cucumber plants. Phytopathology
78:179–185
Leplat J, Friberg H, Abid M, Steinberg C (2013) Survival of Fusarium
graminearum, the causal agent of Fusarium head blight. A review.
Agron Sustain Dev 33:97–111
Leveau JH, Lindow SE (2001) Appetite of an epiphyte: quantitative
monitoring of bacterial sugar consumption in the phyllosphere. Proc
Natl Acad Sci U S A 98:3446–3453
Ley RE, Peterson DA, Gordon JI (2006) Ecological and evolutionary
forces shaping microbial diversity in the human intestine. Cell
124:837–848
Liesack W, Schnell S, Revsbech NP (2000) Microbiology of flooded
rice paddies. FEMS Microbiol Rev 24:625–645
Lindh JM, Terenius O, Faye I (2005) 16S rRNA gene-based identification of midgut bacteria from fieldcaught Anopheles gambiae sensu
lato and A. funestus mosquitoes reveals new species related to
known insect symbionts. Appl Environ Microbiol 71:7217–7223
Lindow SE, Brandl MT (2003) Microbiology of the phyllosphere. Appl
Environ Microbiol 69:1875–1883
Llosa M, O’Callaghan D (2004) Euroconference on the biology of type
IV secretion processes: bacterial gates into the outer world. Mol
Microbiol 53:1–8
Lo ´pez-Garcı ´a P, Moreira D (1999) Metabolic symbiosis at the origin
of eukaryotes. Trends Biochem Sci 24:88–93
Lorenz N, Wilson EV, Machado C, Schardl CL, Tudzynski P (2007)
Comparison of ergot alkaloid biosynthesis gene clusters in
Claviceps species indicates loss of late pathway steps in evolution
of C. fusiformis. Appl Environ Microbiol 73:7185–7191
Lu ¨beck PS, Hansen M, Sørensen J (2000) Simultaneous detection of the
establishment of seed-inoculated Pseudomonas fluorescens strain
DR54 and native soil bacteria on sugar beet root surfaces using
fluorescence antibody and in situ hybridization techniques. FEMS
Microbiol Ecol 33:11–19
Lucas P, Sarniguet A (1998) Biological control of soilborne pathogens
with resident versus introduced antagonists: should diverging
approaches become strategic convergence? In: Barbosa P (ed) Conservation biological control. Academic, New York, pp 351–370
Maillet F et al (2011) Fungal lipochitooligosaccharide symbiotic
signals in arbuscular mycorrhiza. Nature 469:58–63
Mainil J (2013) Escherichia coli virulence factors. Vet Immunol
Immunopathol 152:2–12
Mantelin S, Desbrosses G, Larcher M, Tranbarger TJ, Cleyet-Marel JC, Touraine B (2006) Nitrate-dependent control of root architecture
and N nutrition are altered by a plant growth-promoting
Phyllobacterium sp. Planta 223:591–603
Martin MO (2002) Predatory prokaryotes: an emerging research opportunity. J Mol Microbiol Biotechnol 4:467–477
Mateos M, Castrezana SJ, Nankivell BJ, Estes AM, Markow TA,
Moran NA (2006) Heritable endosymbionts of Drosophila. Genetics 174:363–376
Mathesius U (2003) Conservation and divergence of signalling pathways
between roots and soil microbes – the Rhizobium- legume symbiosis
compared to the development of lateral roots, mycorrhizal
interactions and nematode-induced galls. Plant Soil 255:105–119
Mavingui P, Laguerre G, Berge O, Heulin T (1992) Genetic and
phenotypic diversity of Bacillus polymyxa in soil and in the wheat
rhizosphere. Appl Environ Microbiol 58:1894–1903
McGraw EA, Merritt DJ, Droller JN, O’Neill SL (2002) Wolbachia
density and virulence attenuation after transfer into a novel host.
Proc Natl Acad Sci U S A 99:2918–2923
McInroy JA, Kloepper JW (1995) Population dynamics of endophytic
bacteria in field-grown sweet corn and cotton. Can J Microbiol
41:895–901
Medzhitov R, Preston-Hulburt P, Janeway CA Jr (1997) A human
homologue of the Drosophila Toll protein signals activation of
adaptive immunity. Nature 388:394–397
Miche ´ L, Belkin S, Rozen R, Balandreau J (2003) Rice seedling whole
exudates and extracted alkylresorcinols induce stress-response in
Escherichia coli biosensors. Environ Microbiol 5:403–411
Millette M, Luquet FM, Lacroix M (2007) In vitro growth control of
selected pathogens by Lactobacillus acidophilus- and Lactobacillus
casei-fermented milk. Lett Appl Microbiol 44:314–319
Mills SD, Boland A, Sory MP, van der Smissen P, Kerbourch C, Finlay
BB, Cornelis GR (1997) Yersinia enterocolitica induces apoptosis
in macrophages by a process requiring functional type III secretion
and translocation mechanisms and involving YopP, presumably
acting as an effector protein. Proc Natl Acad Sci U S A
94:12638–12643
Mindlin SZ, Bass IA, Bogdanova ES, Gorlenko ZM, Kaliaeva ES,
Petrova MA, Nikiforov VG (2002) Horizontal transfer of mercury
resistance genes in natural bacterial populations. Mol Biol (Mosk)
36:216–227
Miyairi I, Byrne GI (2006) Chlamydia and programmed cell death. Curr
Opin Microbiol 9:102–108
Monack DM, Mecsas J, Bouley D, Falkow S (1998) Yersinia-induced
apoptosis in vivo aids in the establishment of a systemic infection of
mice. J Exp Med 188:2127–2137
Montgomery MK, McFall-Ngai MJ (1994) Bacterial symbionts induce
host organ morphogenesis during early postembryonic development
of the squid Euprymna scolopes. Development 120:1719–1729
Moran NA (2007) Symbiosis as an adaptive process and source of
phenotypic complexity. Proc Natl Acad Sci U S A 104(Suppl
1):8627–8633
Moran NA, Mira A (2001) The process of genome shrinkage in the
obligate symbiont Buchnera aphidicola. Genome Biol 2:54.1–54.12
Moran NA, McCutcheon JP, Nakabachi A (2008) Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet
42:165–190
Moreira LA et al (2009) A Wolbachia in Aedes aegypti limits infection
with dengue, Chikungunya, and Plasmodium. Cell 139:1268–1278
Morris CE, Monier JM (2003) The ecological significance of biofilm
formation by plant-associated bacteria. Annu Rev Phytopathol
41:429–453
Morris CE, Sands DC, Vanneste JL, Montarry J, Oakley B, Guilbaud C,
Glaux C (2010) Inferring the evolutionary history of the plant
pathogen Pseudomonas syringae from its biogeography in
headwaters of rivers in North America, Europe, and New Zealand.
mBio 1:3
Moubareck C, Bourgeois N, Courvalins P, Doucet-Populaire F (2003)
Multiple antibiotic resistance gene transfer from animal to human
enterococci in the digestive tract of gnotobiotic mice. Antimicrob
Agents Chemother 47:2993–2996
Mougel C, Offre P, Ranjard L, Corberand T, Gamalero E, Robin C,
Lemanceau P (2006) Dynamic of the genetic structure of bacterial
and fungal communities at different developmental stages of
Medicago truncatula Gaertn. cv. Jemalong line J5. New Phytol
170:165–175
11 Microorganisms and Biotic Interactions
441
from Culex pipientis group. Mol Biol Evol 25:1877–1887
Klasson L, Kambris Z, Cook PE, Walker T, Sinkins SP (2009) Horizontal gene transfer between Wolbachia and the mosquito Aedes
aegypti. BMC Genomics 10:33
Krimi Z, Petit A, Mougel C, Dessaux Y, Nesme X (2002) Seasonal
fluctuations and long-term persistence of pathogenic populations of
Agrobacterium spp. in soils. Appl Environ Microbiol 68:3358–3365
Kyselkova ´ M, Kopecky ´ J, Frapolli M, De ´fago G, Sa ´gova ´-Marec ˇkova ´
M, Grundmann GL, Moe ¨nne-Loccoz Y (2009) Comparison of
rhizobacterial community composition in soil suppressive or
conducive to tobacco black root rot disease. ISME J 3:1127–1138
Leben C (1988) Relative humidity and the survival of epiphytic bacteria with buds and leaves of cucumber plants. Phytopathology
78:179–185
Leplat J, Friberg H, Abid M, Steinberg C (2013) Survival of Fusarium
graminearum, the causal agent of Fusarium head blight. A review.
Agron Sustain Dev 33:97–111
Leveau JH, Lindow SE (2001) Appetite of an epiphyte: quantitative
monitoring of bacterial sugar consumption in the phyllosphere. Proc
Natl Acad Sci U S A 98:3446–3453
Ley RE, Peterson DA, Gordon JI (2006) Ecological and evolutionary
forces shaping microbial diversity in the human intestine. Cell
124:837–848
Liesack W, Schnell S, Revsbech NP (2000) Microbiology of flooded
rice paddies. FEMS Microbiol Rev 24:625–645
Lindh JM, Terenius O, Faye I (2005) 16S rRNA gene-based identification of midgut bacteria from fieldcaught Anopheles gambiae sensu
lato and A. funestus mosquitoes reveals new species related to
known insect symbionts. Appl Environ Microbiol 71:7217–7223
Lindow SE, Brandl MT (2003) Microbiology of the phyllosphere. Appl
Environ Microbiol 69:1875–1883
Llosa M, O’Callaghan D (2004) Euroconference on the biology of type
IV secretion processes: bacterial gates into the outer world. Mol
Microbiol 53:1–8
Lo ´pez-Garcı ´a P, Moreira D (1999) Metabolic symbiosis at the origin
of eukaryotes. Trends Biochem Sci 24:88–93
Lorenz N, Wilson EV, Machado C, Schardl CL, Tudzynski P (2007)
Comparison of ergot alkaloid biosynthesis gene clusters in
Claviceps species indicates loss of late pathway steps in evolution
of C. fusiformis. Appl Environ Microbiol 73:7185–7191
Lu ¨beck PS, Hansen M, Sørensen J (2000) Simultaneous detection of the
establishment of seed-inoculated Pseudomonas fluorescens strain
DR54 and native soil bacteria on sugar beet root surfaces using
fluorescence antibody and in situ hybridization techniques. FEMS
Microbiol Ecol 33:11–19
Lucas P, Sarniguet A (1998) Biological control of soilborne pathogens
with resident versus introduced antagonists: should diverging
approaches become strategic convergence? In: Barbosa P (ed) Conservation biological control. Academic, New York, pp 351–370
Maillet F et al (2011) Fungal lipochitooligosaccharide symbiotic
signals in arbuscular mycorrhiza. Nature 469:58–63
Mainil J (2013) Escherichia coli virulence factors. Vet Immunol
Immunopathol 152:2–12
Mantelin S, Desbrosses G, Larcher M, Tranbarger TJ, Cleyet-Marel JC, Touraine B (2006) Nitrate-dependent control of root architecture
and N nutrition are altered by a plant growth-promoting
Phyllobacterium sp. Planta 223:591–603
Martin MO (2002) Predatory prokaryotes: an emerging research opportunity. J Mol Microbiol Biotechnol 4:467–477
Mateos M, Castrezana SJ, Nankivell BJ, Estes AM, Markow TA,
Moran NA (2006) Heritable endosymbionts of Drosophila. Genetics 174:363–376
Mathesius U (2003) Conservation and divergence of signalling pathways
between roots and soil microbes – the Rhizobium- legume symbiosis
compared to the development of lateral roots, mycorrhizal
interactions and nematode-induced galls. Plant Soil 255:105–119
Mavingui P, Laguerre G, Berge O, Heulin T (1992) Genetic and
phenotypic diversity of Bacillus polymyxa in soil and in the wheat
rhizosphere. Appl Environ Microbiol 58:1894–1903
McGraw EA, Merritt DJ, Droller JN, O’Neill SL (2002) Wolbachia
density and virulence attenuation after transfer into a novel host.
Proc Natl Acad Sci U S A 99:2918–2923
McInroy JA, Kloepper JW (1995) Population dynamics of endophytic
bacteria in field-grown sweet corn and cotton. Can J Microbiol
41:895–901
Medzhitov R, Preston-Hulburt P, Janeway CA Jr (1997) A human
homologue of the Drosophila Toll protein signals activation of
adaptive immunity. Nature 388:394–397
Miche ´ L, Belkin S, Rozen R, Balandreau J (2003) Rice seedling whole
exudates and extracted alkylresorcinols induce stress-response in
Escherichia coli biosensors. Environ Microbiol 5:403–411
Millette M, Luquet FM, Lacroix M (2007) In vitro growth control of
selected pathogens by Lactobacillus acidophilus- and Lactobacillus
casei-fermented milk. Lett Appl Microbiol 44:314–319
Mills SD, Boland A, Sory MP, van der Smissen P, Kerbourch C, Finlay
BB, Cornelis GR (1997) Yersinia enterocolitica induces apoptosis
in macrophages by a process requiring functional type III secretion
and translocation mechanisms and involving YopP, presumably
acting as an effector protein. Proc Natl Acad Sci U S A
94:12638–12643
Mindlin SZ, Bass IA, Bogdanova ES, Gorlenko ZM, Kaliaeva ES,
Petrova MA, Nikiforov VG (2002) Horizontal transfer of mercury
resistance genes in natural bacterial populations. Mol Biol (Mosk)
36:216–227
Miyairi I, Byrne GI (2006) Chlamydia and programmed cell death. Curr
Opin Microbiol 9:102–108
Monack DM, Mecsas J, Bouley D, Falkow S (1998) Yersinia-induced
apoptosis in vivo aids in the establishment of a systemic infection of
mice. J Exp Med 188:2127–2137
Montgomery MK, McFall-Ngai MJ (1994) Bacterial symbionts induce
host organ morphogenesis during early postembryonic development
of the squid Euprymna scolopes. Development 120:1719–1729
Moran NA (2007) Symbiosis as an adaptive process and source of
phenotypic complexity. Proc Natl Acad Sci U S A 104(Suppl
1):8627–8633
Moran NA, Mira A (2001) The process of genome shrinkage in the
obligate symbiont Buchnera aphidicola. Genome Biol 2:54.1–54.12
Moran NA, McCutcheon JP, Nakabachi A (2008) Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet
42:165–190
Moreira LA et al (2009) A Wolbachia in Aedes aegypti limits infection
with dengue, Chikungunya, and Plasmodium. Cell 139:1268–1278
Morris CE, Monier JM (2003) The ecological significance of biofilm
formation by plant-associated bacteria. Annu Rev Phytopathol
41:429–453
Morris CE, Sands DC, Vanneste JL, Montarry J, Oakley B, Guilbaud C,
Glaux C (2010) Inferring the evolutionary history of the plant
pathogen Pseudomonas syringae from its biogeography in
headwaters of rivers in North America, Europe, and New Zealand.
mBio 1:3
Moubareck C, Bourgeois N, Courvalins P, Doucet-Populaire F (2003)
Multiple antibiotic resistance gene transfer from animal to human
enterococci in the digestive tract of gnotobiotic mice. Antimicrob
Agents Chemother 47:2993–2996
Mougel C, Offre P, Ranjard L, Corberand T, Gamalero E, Robin C,
Lemanceau P (2006) Dynamic of the genetic structure of bacterial
and fungal communities at different developmental stages of
Medicago truncatula Gaertn. cv. Jemalong line J5. New Phytol
170:165–175
11 Microorganisms and Biotic Interactions
441