Altier G (2005) Genetic and environmental control of Salmonella
invasion. J Microbiol 43:82–92
Amellal N, Burtin G, Bartoli F, Heulin T (1998) Colonization of wheat
roots by an exopolysaccharide-producing Pantoea agglomerans
strain and its effect on rhizosphere soil aggregation. Appl Environ
Microbiol 64:3740–3747
Atlas RM, Bartha R (1981) Microbial ecology: fundamentals and
applications. Addison-Wesley, Reading
Auge RM (2004) Arbuscular mycorrhizae and soil/plant water
relations. Can J Soil Sci 84:373–381
Bacci M Jr, Anversa MM, Pagnocca FC (1995) Cellulose degradation
by Leucocoprinus gongylophorus, the fungus cultured by the leafcutting ant Atta sexdens rubropilosa. Anton Leeuw Int J G
67:385–386
Ba ¨ckhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A,
Semenkovich CF, Gordon JI (2004) The gut microbiota as an
environmental factor that regulates fat storage. Proc Natl Acad Sci
U S A 101:15718–15723
Ba ¨ckhed F, Ley RE, Sonnenburg JL, Petreson DA, Gordon JI (2005)
Host-bacterial mutualism in the human intestine. Science
307:1915–1920
Bailly J, Debaud JC, Verner MC, Plassard C, Chalot M, Marmeisse R,
Fraissinet-Tachet L (2007) How does a symbiotic fungus modulate
expression of its hostplant nitrite reductase? New Phytol
175:155–165
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of
root exudates in rhizosphere interactions with plants and other
organisms. Annu Rev Plant Biol 57:233–266
Balcewicz-Sablinska MK, Keane J, Kornfeld H, Remold HG (1998)
Pathogenic Mycobacterium tuberculosis evades apoptosis of host
macrophages by release of TNFR2, resulting in inactivation of
TNF-alpha. J Immunol 161:2636–2641
Bandi C, Trees AJ, Brattig NW (2001) Wolbachia in filarial nematodes:
evolutionary aspects and implications for pathogenesis and treatment of filarial diseases. Vet Parasitol 98:215–238
Bannerman DD, Goldblum SE (1997) Endotoxin induces endothelial
barrier dysfunction through protein tyrosine phosphorylation. Am J
Physiol 273:217–226
Baratin M et al (2005) Natural killer cell and macrophage cooperation
in MyD88-dependent innate responses to Plasmodium falciparum.
Proc Natl Acad Sci U S A 102:14747–14752
Barbault R (1997) Ecologie Ge ´ne ´rale. Structure et fonctionnement de la
biosphe `re, 4th edn. Masson, Paris, 281 p
Barre ´-Sinoussi F et al (1983) Isolation of a T-lymphotropic retrovirus
from a patient at risk for Acquired Immune Deficiency Syndrome
(AIDS). Science 4599:868–871
Bauer WD, Robinson JB (2002) Disruption of bacterial quorum sensing
by other organisms. Curr Opin Biotechnol 13:234–237
Baumann P, Moran NA, Beaumann L (2000) Bacteriocyte- associated
endosymbionts of insects. In: Dworkin M (ed) The prokaryotes.
Springer, NewYork, pp 1–67
Beattie GA, Lindow SE (1999) Bacterial colonization of leaves: a
spectrum of strategies. Phytopathology 89:353–359
Belimov AA, Hontzeas N, Safronova VI, Demchinskaya SV, Piluzza
G, Bullitta S, Glick BR (2005) Cadmium-tolerant plant growthpromoting bacteria associated with the roots of Indian mustard
(Brassica juncea L. Czern.). Soil Biol Biochem 37:241–250
Bennett AE, Bever JD (2007) Mycorrhizal species differentially alter
plant growth and response to herbivory. Ecology 88:210–218
Bentley SD et al (2002) Complete genome sequence of the model
actinomycete Streptomyces coelicolor A3(2). Nature 417:141–147
Bertaux J, Schmid M, Prevost-Boure NC, Churin JL, Hartmann A,
Garbaye J, Frey-Klett P (2003) In situ identification of intracellular
bacteria related to Paenibacillus spp. in the mycelium of the
ectomycorrhizal fungus Laccaria bicolor S238N. Appl Environ
Microbiol 69:4243–4248
Berthiller F et al (2013) Masked mycotoxins: a review. Mol Nutr Food
Res 57:165–186
Birge EA, Kurland CG (1969) Altered ribosomal protein in
streptomycin-dependent Escherichia coli. Science 166:1282–1284
Bjorklof K, Nurmiaho-Lassila EL, Klinger N, Haahtela K,
Romantschuk M (2000) Colonization strategies and conjugal gene
transfer of inoculated Pseudomonas syringae on the leaf surface. J
Appl Microbiol 89:423–432
Blanc C, Sy M, Djigal D, Brauman A, Normand P, Villenave C (2006)
Nutrition on bacteria by bacterial-feeding nematodes and
consequences on the structure of soul bacterial community. Eur J
Soil Biol 42:S70–S78
Bohrerova Z, Stralkova R, Podesvova J, Bohrer G, Pokorny E (2004)
The relationship between redox potential and nitrification under
different sequences of crop rotations. Soil Till Res 77:25–33
Bonkowski M (2004) Protozoa and plant growth: the microbial loop in
soil revisited. New Phytol 162:617–631
Bouchez M, Blanchet D, Bardin V, Haeseler F, Vandecasteele JP
(1999) Efficiency of defined strains and of soil consortia in the
biodegradation of polycyclic aromatic hydrocarbon (PAH)
mixtures. Biodegradation 10:429–435
Brady J, Costantini C, Sagnon N, Gibson G, Coluzzi M (1997) The role
of body odours in relative attractiveness of different men to malarial
vectors in Burkina Faso. Ann Trop Med Parasitol 91:S121–S122
Brundrett MC (2009) Mycorrhizal associations and other means of
nutrition of vascular plants: understanding the global diversity of
host plants by resolving conflicting information and developing
reliable means of diagnosis. Plant Soil 320:37–77
Brune A (2003) Symbionts aiding digestion. In: Carde ´ RT, Resh VH
(eds) Encyclopedia of insects. Academic, New York, pp 1102–1107
Buchner P (1965) Endosymbiosis of animals with plant
microorganisms. Wiley Interscience, New York
Cardon ZG, Whitbeck JL (2007) The rhizosphere: an ecological perspective. Elsevier, Burlington
Cascales E, Christie PJ (2003) The versatile bacterial type IV secretion
systems. Nat Rev Microbiol 1:137–150
Cavagnaro TR, Smith FA, Smith SE, Jakobsen I (2005) Functional
diversity in arbuscular mycorrhizas: exploitation of soil patches
with different phosphate enrichment differs among fungal species.
Plant Cell Environ 28:642–650
Cavanaugh CM, Gardiner SL, Jones ML, Jannasch HW, Waterbury JB
(1981) Prokaryotic cells in the hydrothermal vent tube worm Riftia
pachyptilia Jones: possible chemoautotrophic symbionts. Science
213:340–342
Chapon A, Guillerm A-Y, Delalande L, Lebreton L, Sarniguet A (2002)
Dominant colonisation of wheat roots by Pseudomonas fluorescens
Pf29A and selection of the indigenous microflora in the presence of
the take-all fungus. Eur J Plant Pathol 108:449–459
Chevrot R, Rosen R, Haudecoeur E, Cirou A, Shelp BJ, Ron E, Faure D
(2006) GABA controls the level of quorum-sensing signal in
Agrobacterium tumefaciens. Proc Natl Acad Sci U S A
103:7460–7464
Clarke TE, Clem RJ (2003) Insect defenses against virus infection: the
role of apoptosis. Int Rev Immunol 22:401–424
Clifton DR, Goss RA, Sahni SK, van Antwerp D, Baggs RB, Marder
VJ, Silverman DJ, Sporn LA (1998) NF-kappaB-dependent
inhibition of apoptosis is essential for host cell survival during
Rickettsia rickettsii infection. Proc Natl Acad Sci U S A
95:4646–4651
Cossart P, Sansonetti PJ (2004) Bacterial invasion: the paradigms of
enteroinvasive pathogens. Science 304:242–248
Crutzen PJ, Mosier AR, Smith KA, Winiwarter W (2007) N 2 O release
from agro-biofuel production negates global warming reduction by
replacing fossil fuels. Atmos Chem Phys Discuss 7:11191–11205
Dabire ´ KR, Ndiaye S, Chotte J-L, Fould S, Diop MT, Mateille T (2005)
Influence of irrigation on the distribution and control of the
438
Y. Moe ¨nne-Loccoz et al.
invasion. J Microbiol 43:82–92
Amellal N, Burtin G, Bartoli F, Heulin T (1998) Colonization of wheat
roots by an exopolysaccharide-producing Pantoea agglomerans
strain and its effect on rhizosphere soil aggregation. Appl Environ
Microbiol 64:3740–3747
Atlas RM, Bartha R (1981) Microbial ecology: fundamentals and
applications. Addison-Wesley, Reading
Auge RM (2004) Arbuscular mycorrhizae and soil/plant water
relations. Can J Soil Sci 84:373–381
Bacci M Jr, Anversa MM, Pagnocca FC (1995) Cellulose degradation
by Leucocoprinus gongylophorus, the fungus cultured by the leafcutting ant Atta sexdens rubropilosa. Anton Leeuw Int J G
67:385–386
Ba ¨ckhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A,
Semenkovich CF, Gordon JI (2004) The gut microbiota as an
environmental factor that regulates fat storage. Proc Natl Acad Sci
U S A 101:15718–15723
Ba ¨ckhed F, Ley RE, Sonnenburg JL, Petreson DA, Gordon JI (2005)
Host-bacterial mutualism in the human intestine. Science
307:1915–1920
Bailly J, Debaud JC, Verner MC, Plassard C, Chalot M, Marmeisse R,
Fraissinet-Tachet L (2007) How does a symbiotic fungus modulate
expression of its hostplant nitrite reductase? New Phytol
175:155–165
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of
root exudates in rhizosphere interactions with plants and other
organisms. Annu Rev Plant Biol 57:233–266
Balcewicz-Sablinska MK, Keane J, Kornfeld H, Remold HG (1998)
Pathogenic Mycobacterium tuberculosis evades apoptosis of host
macrophages by release of TNFR2, resulting in inactivation of
TNF-alpha. J Immunol 161:2636–2641
Bandi C, Trees AJ, Brattig NW (2001) Wolbachia in filarial nematodes:
evolutionary aspects and implications for pathogenesis and treatment of filarial diseases. Vet Parasitol 98:215–238
Bannerman DD, Goldblum SE (1997) Endotoxin induces endothelial
barrier dysfunction through protein tyrosine phosphorylation. Am J
Physiol 273:217–226
Baratin M et al (2005) Natural killer cell and macrophage cooperation
in MyD88-dependent innate responses to Plasmodium falciparum.
Proc Natl Acad Sci U S A 102:14747–14752
Barbault R (1997) Ecologie Ge ´ne ´rale. Structure et fonctionnement de la
biosphe `re, 4th edn. Masson, Paris, 281 p
Barre ´-Sinoussi F et al (1983) Isolation of a T-lymphotropic retrovirus
from a patient at risk for Acquired Immune Deficiency Syndrome
(AIDS). Science 4599:868–871
Bauer WD, Robinson JB (2002) Disruption of bacterial quorum sensing
by other organisms. Curr Opin Biotechnol 13:234–237
Baumann P, Moran NA, Beaumann L (2000) Bacteriocyte- associated
endosymbionts of insects. In: Dworkin M (ed) The prokaryotes.
Springer, NewYork, pp 1–67
Beattie GA, Lindow SE (1999) Bacterial colonization of leaves: a
spectrum of strategies. Phytopathology 89:353–359
Belimov AA, Hontzeas N, Safronova VI, Demchinskaya SV, Piluzza
G, Bullitta S, Glick BR (2005) Cadmium-tolerant plant growthpromoting bacteria associated with the roots of Indian mustard
(Brassica juncea L. Czern.). Soil Biol Biochem 37:241–250
Bennett AE, Bever JD (2007) Mycorrhizal species differentially alter
plant growth and response to herbivory. Ecology 88:210–218
Bentley SD et al (2002) Complete genome sequence of the model
actinomycete Streptomyces coelicolor A3(2). Nature 417:141–147
Bertaux J, Schmid M, Prevost-Boure NC, Churin JL, Hartmann A,
Garbaye J, Frey-Klett P (2003) In situ identification of intracellular
bacteria related to Paenibacillus spp. in the mycelium of the
ectomycorrhizal fungus Laccaria bicolor S238N. Appl Environ
Microbiol 69:4243–4248
Berthiller F et al (2013) Masked mycotoxins: a review. Mol Nutr Food
Res 57:165–186
Birge EA, Kurland CG (1969) Altered ribosomal protein in
streptomycin-dependent Escherichia coli. Science 166:1282–1284
Bjorklof K, Nurmiaho-Lassila EL, Klinger N, Haahtela K,
Romantschuk M (2000) Colonization strategies and conjugal gene
transfer of inoculated Pseudomonas syringae on the leaf surface. J
Appl Microbiol 89:423–432
Blanc C, Sy M, Djigal D, Brauman A, Normand P, Villenave C (2006)
Nutrition on bacteria by bacterial-feeding nematodes and
consequences on the structure of soul bacterial community. Eur J
Soil Biol 42:S70–S78
Bohrerova Z, Stralkova R, Podesvova J, Bohrer G, Pokorny E (2004)
The relationship between redox potential and nitrification under
different sequences of crop rotations. Soil Till Res 77:25–33
Bonkowski M (2004) Protozoa and plant growth: the microbial loop in
soil revisited. New Phytol 162:617–631
Bouchez M, Blanchet D, Bardin V, Haeseler F, Vandecasteele JP
(1999) Efficiency of defined strains and of soil consortia in the
biodegradation of polycyclic aromatic hydrocarbon (PAH)
mixtures. Biodegradation 10:429–435
Brady J, Costantini C, Sagnon N, Gibson G, Coluzzi M (1997) The role
of body odours in relative attractiveness of different men to malarial
vectors in Burkina Faso. Ann Trop Med Parasitol 91:S121–S122
Brundrett MC (2009) Mycorrhizal associations and other means of
nutrition of vascular plants: understanding the global diversity of
host plants by resolving conflicting information and developing
reliable means of diagnosis. Plant Soil 320:37–77
Brune A (2003) Symbionts aiding digestion. In: Carde ´ RT, Resh VH
(eds) Encyclopedia of insects. Academic, New York, pp 1102–1107
Buchner P (1965) Endosymbiosis of animals with plant
microorganisms. Wiley Interscience, New York
Cardon ZG, Whitbeck JL (2007) The rhizosphere: an ecological perspective. Elsevier, Burlington
Cascales E, Christie PJ (2003) The versatile bacterial type IV secretion
systems. Nat Rev Microbiol 1:137–150
Cavagnaro TR, Smith FA, Smith SE, Jakobsen I (2005) Functional
diversity in arbuscular mycorrhizas: exploitation of soil patches
with different phosphate enrichment differs among fungal species.
Plant Cell Environ 28:642–650
Cavanaugh CM, Gardiner SL, Jones ML, Jannasch HW, Waterbury JB
(1981) Prokaryotic cells in the hydrothermal vent tube worm Riftia
pachyptilia Jones: possible chemoautotrophic symbionts. Science
213:340–342
Chapon A, Guillerm A-Y, Delalande L, Lebreton L, Sarniguet A (2002)
Dominant colonisation of wheat roots by Pseudomonas fluorescens
Pf29A and selection of the indigenous microflora in the presence of
the take-all fungus. Eur J Plant Pathol 108:449–459
Chevrot R, Rosen R, Haudecoeur E, Cirou A, Shelp BJ, Ron E, Faure D
(2006) GABA controls the level of quorum-sensing signal in
Agrobacterium tumefaciens. Proc Natl Acad Sci U S A
103:7460–7464
Clarke TE, Clem RJ (2003) Insect defenses against virus infection: the
role of apoptosis. Int Rev Immunol 22:401–424
Clifton DR, Goss RA, Sahni SK, van Antwerp D, Baggs RB, Marder
VJ, Silverman DJ, Sporn LA (1998) NF-kappaB-dependent
inhibition of apoptosis is essential for host cell survival during
Rickettsia rickettsii infection. Proc Natl Acad Sci U S A
95:4646–4651
Cossart P, Sansonetti PJ (2004) Bacterial invasion: the paradigms of
enteroinvasive pathogens. Science 304:242–248
Crutzen PJ, Mosier AR, Smith KA, Winiwarter W (2007) N 2 O release
from agro-biofuel production negates global warming reduction by
replacing fossil fuels. Atmos Chem Phys Discuss 7:11191–11205
Dabire ´ KR, Ndiaye S, Chotte J-L, Fould S, Diop MT, Mateille T (2005)
Influence of irrigation on the distribution and control of the
438
Y. Moe ¨nne-Loccoz et al.