nematode Meloidogyne javanica by the biocontrol bacterium
Pasteuria penetrans in the field. Biol Fertil Soils 41:205–211
Daborn PJ, Waterfield N, Silva CP, Au CP, Sharma S, FfrenchConstant RH (2002) A single Photorhabdus gene, makes
caterpillars floppy (mcf), allows Escherichia coli to persist within
and kill insects. Proc Natl Acad Sci U S A 99:10742–10747
Dale C, Plague GR, Wang B, Ochman H, Moran NA (2002) Type III
secretion system and the evolution of mutualistic endosymbiosis.
Proc Natl Acad Sci U S A 99:12397–12402
Dams RI, Paton GI, Killham K (2007) Rhizoremediation of pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723.
Chemosphere 68:864–870
Darwin C (1859) On the origin of species by means of natural selection,
or the preservation of favoured races in the struggle for life. John
Murray, London
Daubin V, Ochman H (2004) Bacterial genomes as new gene homes:
the genealogy of ORFans in E. coli. Genome Res 14:1036–1042
Davelos AL, Kinkel LL, Samac DA (2004) Spatial variation in frequency and intensity of antibiotic interactions among
Streptomycetes from prairie soil. Appl Environ Microbiol
70:1051–1058
de Bary HA (1879) Die Erscheinung der Symbiose. KJ Tru ¨bner,
Strasbourg
de-Bashan L, Hernandez J-P, Morey T, Bashan Y (2004) Microalgae
growth-promoting bacteria as “helpers” for microalgae: a novel
approach for removing ammonium and phosphorus from municipal
wastewater. Water Res 38:466–474
Dedeine F, Vavre F, Fleury F, Loppin B, Hochberg ME, Boule ´treau M
(2001) Removing symbiotic Wolbachia bacteria specifically
inhibits oogenesis in parasitic wasps. Proc Natl Acad Sci U S A
98:6247–6252
Delong EF, Pace NR (2001) Environmental diversity of bacteria and
archae. Syst Biol 50:470–478
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and
evolutionary perspective on human-microbe mutualism and disease.
Nature 449:811–818
Devers M, Henry S, Hartmann A, Martin-Laurent F (2005) Horizontal
gene transfer of atrazine-degrading genes (atz) from Agrobacterium
tumefaciens St96-4 pADP1::Tn5 to bacteria of maize-cultivated
soil. Pest Manag Sci 61:870–880
Distel DL, Lane DJ, Olsen GJ, Giovannoni SJ, Pace B, Pace NR, Stahl
DA, Felbeck H (1988) Sulfur-oxidizing bacterial endosymbionts:
analysis of phylogeny and specificity by 16S rRNA sequences.
J Bacteriol 170:2506–2510
Dobbelaere S et al (2001) Responses of agronomically important crops
to inoculation with Azospirillum. Aust J Plant Physiol 28:871–879
Dobbelaere S, Vanderleyden J, Okon Y (2003) Plant growth-promoting
effects of diazotrophs in the rhizosphere. Crit Rev Plant Sci
22:107–149
Dodds PN, Rathjen JP (2010) Plant immunity: towards an integrated
view of plant-pathogen interactions. Nat Rev Genet 11:539–548
Douglas AE (1998) Nutritional interactions in insect-microbial
symbioses: aphids and their symbiotic bacteria Buchnera. Annu
Rev Entomol 43:17–37
Dunbar HE, Wilson AC, Ferguson NR, Moran NA (2007) Aphid
thermal tolerance is governed by a point mutation in bacterial
symbionts. PLoS Biol 5:e96
Ebbole DJ (2007) Magnaporthe as a model for understanding hostpathogen interactions. Annu Rev Phytopathol 45:437–456
Edel V, Steinberg C, Gautheron N, Recorbet G, Alabouvette C (2001)
Genetic diversity of Fusarium oxysporum populations isolated from
different soils in France. FEMS Microbiol Ecol 36:61–71
Edwald PW (1987) Transmission modes and evolution of the
parasitism-mutualism continuum. Ann N Y Acad Sci 503:295–306
Fall S, Hamelin J, Ndiaye F, Assigbetse K, Aragno M, Chotte JL,
Brauman A (2007) Differences between bacterial communities in
the gut of a soil-feeding termite (Cubitermes niokoloensis) and its
mounds. Appl Environ Microbiol 73:5199–5208
Fan T, Lu H, Hu H, Shi L, McClarty GA, Nance DM, Greenberg AH,
Zhong G (1998) Inhibition of apoptosis in Chlamydia-infected
cells: blockade of mitochondrial cytochrome c release and caspase
activation. J Exp Med 187:487–496
Favia G et al (2007) Bacteria of the genus Asaia stably associate with
Anopheles stephensi, an Asian malarial mosquito vector. Proc Natl
Acad Sci U S A 104:9047–9051
Faherty CS, Maurelli AT (2008) Staying alive: bacterial inhibition of
apoptosis during infection. Trends Microbiol 16:173–180
Fedi S, Tola E, Moe ¨nne-Loccoz Y, Dowling DN, Smith LM, O’Gara F
(1997) Evidence for signaling between the phytopathogenic fungus
Pythium ultimum and Pseudomonas fluorescens F113: P. ultimum
represses the expression of genes in P. fluorescens F113, resulting in
altered ecological fitness. Appl Environ Microbiol 63:4261–4266
Ferrandon D, Imler JL, Hetru C, Hoffmann JA (2007) The Drosophila
systemic immune response: sensing and signaling during bacterial
and fungal infections. Nat Rev Immunol 7:862–874
Filloux A, Hachani A, Bleves S (2008) The bacterial type VI secretion
machine: yet another player for protein transport across membranes.
Microbiology 154:1570–1583
Fisher K, Beatty WL, Jiang D, Weil GJ, Fisher PU (2011) Tissue and
stage-specific distribution of Wolbachia in Brugia malayi. PLoS
Negl Trop Dis 5:e1174
Fleming A (1922) On a remarkable bacteriolytic element found in
tissues and secretions. Proc R Soc Ser B 93:306–317
Flor JM (1956) The complementary genetic systems in flax and flax
rust. Adv Genet 8:29–54
Forst S, Dowds B, Boemare N, Stackebrandt E (1997) Xenorhabdus
and Photorhabdus spp.: bugs that kill bugs. Annu Rev Microbiol
51:47–72
Foster PL (2007) Stress-induced mutagenesis in bacteria. Crit Rev
Biochem Mol Biol 42:373–397
Foster J et al (2005) The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. PLoS
Biol 3:599–614
Fourcans A, Sole A, Diestra E, Ranchou-Peyruse A, Esteve I, Caumette
P, Duran R (2006) Vertical migration of phototrophic bacterial
populations in a hypersaline microbial mat from Salins-de-Giraud
(Camargue, France). FEMS Microbiol Ecol 57:367–377
Frank AB (1885) Uber die auf Wurzelsymbiose beruhende Ernahrung
gewisser Baume durch unteriridische Pilze. Ber Deut Bot Ges
3:128–145
Frank AB (1889) Uber die Pilzsymbiose der Leguminosen. Ber Deut
Bot Ges 7:332–346
Futayama D (1986) The evolution of interactions among species. In:
Davis A, Vesely J (eds) Evolutionary biology. Sinauer Associates,
Inc., Sunderland, pp 482–504
Gamboa MA, Laureano S, Bayman P (2003) Measuring diversity of
endophytic fungi in leaf fragments: does size matter?
Mycopathologia 156:41–45
Gao LY, Abu Kwaid Y (2000) The modulation of host cell apoptosis by
intracellular bacterial pathogens. Trends Microbiol 87:306–313
Garbeva P, van Veen JA, van Elsas JD (2004) Microbial diversity in
soil: selection of microbial populations by plant and soil type and
implications for disease suppressiveness. Annu Rev Phytopathol
42:243–270
Gautier-Clerc M, Lebarbenchon C, Thomas F (2007) Recent expansion
of highly pathogenic avian influenza H5N1: a critical review. Ibis
149:202–214
Ge Y, Yoshiie K, Kuribayashi F, Lin M, Rikihisa Y (2005) Anaplasma
phagocytophilum inhibits human neutrophil apoptosis via
upregulation of bfl-1, maintenance of mitochondrial membrane
potential and prevention of caspase 3 activation. Cell Microbiol
7:29–38
11 Microorganisms and Biotic Interactions
439
Pasteuria penetrans in the field. Biol Fertil Soils 41:205–211
Daborn PJ, Waterfield N, Silva CP, Au CP, Sharma S, FfrenchConstant RH (2002) A single Photorhabdus gene, makes
caterpillars floppy (mcf), allows Escherichia coli to persist within
and kill insects. Proc Natl Acad Sci U S A 99:10742–10747
Dale C, Plague GR, Wang B, Ochman H, Moran NA (2002) Type III
secretion system and the evolution of mutualistic endosymbiosis.
Proc Natl Acad Sci U S A 99:12397–12402
Dams RI, Paton GI, Killham K (2007) Rhizoremediation of pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723.
Chemosphere 68:864–870
Darwin C (1859) On the origin of species by means of natural selection,
or the preservation of favoured races in the struggle for life. John
Murray, London
Daubin V, Ochman H (2004) Bacterial genomes as new gene homes:
the genealogy of ORFans in E. coli. Genome Res 14:1036–1042
Davelos AL, Kinkel LL, Samac DA (2004) Spatial variation in frequency and intensity of antibiotic interactions among
Streptomycetes from prairie soil. Appl Environ Microbiol
70:1051–1058
de Bary HA (1879) Die Erscheinung der Symbiose. KJ Tru ¨bner,
Strasbourg
de-Bashan L, Hernandez J-P, Morey T, Bashan Y (2004) Microalgae
growth-promoting bacteria as “helpers” for microalgae: a novel
approach for removing ammonium and phosphorus from municipal
wastewater. Water Res 38:466–474
Dedeine F, Vavre F, Fleury F, Loppin B, Hochberg ME, Boule ´treau M
(2001) Removing symbiotic Wolbachia bacteria specifically
inhibits oogenesis in parasitic wasps. Proc Natl Acad Sci U S A
98:6247–6252
Delong EF, Pace NR (2001) Environmental diversity of bacteria and
archae. Syst Biol 50:470–478
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and
evolutionary perspective on human-microbe mutualism and disease.
Nature 449:811–818
Devers M, Henry S, Hartmann A, Martin-Laurent F (2005) Horizontal
gene transfer of atrazine-degrading genes (atz) from Agrobacterium
tumefaciens St96-4 pADP1::Tn5 to bacteria of maize-cultivated
soil. Pest Manag Sci 61:870–880
Distel DL, Lane DJ, Olsen GJ, Giovannoni SJ, Pace B, Pace NR, Stahl
DA, Felbeck H (1988) Sulfur-oxidizing bacterial endosymbionts:
analysis of phylogeny and specificity by 16S rRNA sequences.
J Bacteriol 170:2506–2510
Dobbelaere S et al (2001) Responses of agronomically important crops
to inoculation with Azospirillum. Aust J Plant Physiol 28:871–879
Dobbelaere S, Vanderleyden J, Okon Y (2003) Plant growth-promoting
effects of diazotrophs in the rhizosphere. Crit Rev Plant Sci
22:107–149
Dodds PN, Rathjen JP (2010) Plant immunity: towards an integrated
view of plant-pathogen interactions. Nat Rev Genet 11:539–548
Douglas AE (1998) Nutritional interactions in insect-microbial
symbioses: aphids and their symbiotic bacteria Buchnera. Annu
Rev Entomol 43:17–37
Dunbar HE, Wilson AC, Ferguson NR, Moran NA (2007) Aphid
thermal tolerance is governed by a point mutation in bacterial
symbionts. PLoS Biol 5:e96
Ebbole DJ (2007) Magnaporthe as a model for understanding hostpathogen interactions. Annu Rev Phytopathol 45:437–456
Edel V, Steinberg C, Gautheron N, Recorbet G, Alabouvette C (2001)
Genetic diversity of Fusarium oxysporum populations isolated from
different soils in France. FEMS Microbiol Ecol 36:61–71
Edwald PW (1987) Transmission modes and evolution of the
parasitism-mutualism continuum. Ann N Y Acad Sci 503:295–306
Fall S, Hamelin J, Ndiaye F, Assigbetse K, Aragno M, Chotte JL,
Brauman A (2007) Differences between bacterial communities in
the gut of a soil-feeding termite (Cubitermes niokoloensis) and its
mounds. Appl Environ Microbiol 73:5199–5208
Fan T, Lu H, Hu H, Shi L, McClarty GA, Nance DM, Greenberg AH,
Zhong G (1998) Inhibition of apoptosis in Chlamydia-infected
cells: blockade of mitochondrial cytochrome c release and caspase
activation. J Exp Med 187:487–496
Favia G et al (2007) Bacteria of the genus Asaia stably associate with
Anopheles stephensi, an Asian malarial mosquito vector. Proc Natl
Acad Sci U S A 104:9047–9051
Faherty CS, Maurelli AT (2008) Staying alive: bacterial inhibition of
apoptosis during infection. Trends Microbiol 16:173–180
Fedi S, Tola E, Moe ¨nne-Loccoz Y, Dowling DN, Smith LM, O’Gara F
(1997) Evidence for signaling between the phytopathogenic fungus
Pythium ultimum and Pseudomonas fluorescens F113: P. ultimum
represses the expression of genes in P. fluorescens F113, resulting in
altered ecological fitness. Appl Environ Microbiol 63:4261–4266
Ferrandon D, Imler JL, Hetru C, Hoffmann JA (2007) The Drosophila
systemic immune response: sensing and signaling during bacterial
and fungal infections. Nat Rev Immunol 7:862–874
Filloux A, Hachani A, Bleves S (2008) The bacterial type VI secretion
machine: yet another player for protein transport across membranes.
Microbiology 154:1570–1583
Fisher K, Beatty WL, Jiang D, Weil GJ, Fisher PU (2011) Tissue and
stage-specific distribution of Wolbachia in Brugia malayi. PLoS
Negl Trop Dis 5:e1174
Fleming A (1922) On a remarkable bacteriolytic element found in
tissues and secretions. Proc R Soc Ser B 93:306–317
Flor JM (1956) The complementary genetic systems in flax and flax
rust. Adv Genet 8:29–54
Forst S, Dowds B, Boemare N, Stackebrandt E (1997) Xenorhabdus
and Photorhabdus spp.: bugs that kill bugs. Annu Rev Microbiol
51:47–72
Foster PL (2007) Stress-induced mutagenesis in bacteria. Crit Rev
Biochem Mol Biol 42:373–397
Foster J et al (2005) The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. PLoS
Biol 3:599–614
Fourcans A, Sole A, Diestra E, Ranchou-Peyruse A, Esteve I, Caumette
P, Duran R (2006) Vertical migration of phototrophic bacterial
populations in a hypersaline microbial mat from Salins-de-Giraud
(Camargue, France). FEMS Microbiol Ecol 57:367–377
Frank AB (1885) Uber die auf Wurzelsymbiose beruhende Ernahrung
gewisser Baume durch unteriridische Pilze. Ber Deut Bot Ges
3:128–145
Frank AB (1889) Uber die Pilzsymbiose der Leguminosen. Ber Deut
Bot Ges 7:332–346
Futayama D (1986) The evolution of interactions among species. In:
Davis A, Vesely J (eds) Evolutionary biology. Sinauer Associates,
Inc., Sunderland, pp 482–504
Gamboa MA, Laureano S, Bayman P (2003) Measuring diversity of
endophytic fungi in leaf fragments: does size matter?
Mycopathologia 156:41–45
Gao LY, Abu Kwaid Y (2000) The modulation of host cell apoptosis by
intracellular bacterial pathogens. Trends Microbiol 87:306–313
Garbeva P, van Veen JA, van Elsas JD (2004) Microbial diversity in
soil: selection of microbial populations by plant and soil type and
implications for disease suppressiveness. Annu Rev Phytopathol
42:243–270
Gautier-Clerc M, Lebarbenchon C, Thomas F (2007) Recent expansion
of highly pathogenic avian influenza H5N1: a critical review. Ibis
149:202–214
Ge Y, Yoshiie K, Kuribayashi F, Lin M, Rikihisa Y (2005) Anaplasma
phagocytophilum inhibits human neutrophil apoptosis via
upregulation of bfl-1, maintenance of mitochondrial membrane
potential and prevention of caspase 3 activation. Cell Microbiol
7:29–38
11 Microorganisms and Biotic Interactions
439