Index
391
Chordate, 120, 144, 167–168
Chromalveolates, 181–182, 301
Ciliates, 182
Ciona intestinalis, 168, 307
Cladism/cladistic approach, 122–124
Clavibacter michiganensis, 318
Climate change, 2, 23, 93, 97–98, 100,
103–105, 204
Clone, 10, 36, 47–48, 51, 75, 317
Clustering, 53–54, 132, 326–330, 340, 365,
367–368
Clusters of euKaryotic Orthologous Groups
or Clusters of Orthologous Groups
(COG/KOG), 329–330
Clytia hemisphaerica, 155
Cnidarian, 128–131, 149, 154–161, 164
Coccolithophores, 182, 187, 197
Coccolithovirus EhV-86, 190, 300
Codfish, 20, 76, 223, 260
Coelom, 121–123, 129–132, 134, 136
Coelomata, 129–131, 136
Cohort, 250
Colony blot, 49
Colony formation, 146, 149–150
Common garden experiments, 5
Common mussel, 98, 248
Communication technology, 7
Community Cyberinfrastructure for Advanced
Marine Microbial Ecology Research
and Analysis (CAMERA), 50, 55,
61, 296
Community genomics, 35
Community Sequencing Program, 55
Comparative genomics, 55, 90, 213, 218, 291,
326, 342–355
Comparative metagenomics, 51, 58–60
Complex adaptive systems (CAS) approach, 22
Complexity, 6, 52, 97–98, 121–122,
136, 143–171, 188, 204, 229,
235, 305
Composite taxon, 131–132
Computational genomics, data, 370
Computing technology, 7
Congregibacter litoralis, 11
Consortium for the Barcoding of Life
(CBOL), 16
Contig, 36
Convergent evolution, 80
Coregonus clupeaformis, 88, 260–262
Cosmetic, 199
Cosmid, 11, 37, 46, 48
Crassostrea gigas, 11, 18, 20, 87, 94, 214, 225,
245, 248–249
Crassostrea virginica, 11, 79
Critica, 56, 333–334
Crustacean, 2, 119, 161–162, 166
Cryoprotectant, 49
Cryptic, 2–3, 8, 12, 153–154, 160–161,
196, 250
Cryptomonads, 198
Cryptophyceae, 12, 186
Cryptophytes, 182, 198
Ctenophores, 122–123, 126, 136–137
Cubozoan, 160
Cyanidioschyzon merolae, 185, 192, 304–306
Cyanophora paradoxa, 185, 197
Cyprinus carpio, 228
Cytochrome c oxidase subunit, 1 (CO1),
9, 16
Cytotoxins, 191
D
ddNTP, 316
Debaryomyces hansenii, 306
(2E, 4E/Z)-decadienal (DD), 194
Degenerate PCR, 81
Dehalobium chlorocoercia, 295
Delta, 147, 225
Denaturing gradient gel electrophoresis
(DGGE), 10, 19, 44
Density gradient centrifugation, 38–41
Deoxy-nucleotide (Dntp), 50, 319–320
Desulfotalea psychrophila, 295
Deuterostomes, 120, 122–123, 125, 132–135,
158, 166–167
Diatoms, 7, 12, 176, 186, 192, 194–198,
304, 306
Dicentrarchus labrax, 85, 87–88, 214
Dinoflagellates, 182–183, 187, 190, 198–199
Dinokaryon, 198
Directional selection, 88, 257
Diversity, 2, 4, 6–8, 10–11, 13–17, 21–23,
34–37, 51–52, 57–60, 78–80, 120, 132,
146, 150, 155, 161–162, 170–171, 224,
251, 288–290, 301
DNA amplification, 35, 38–39, 42, 44,
238, 320
DNA barcoding, 2, 5, 9, 15–17, 20
DNA isolation, 38, 41, 48
Domoic acid, 191
Dreissena polymorpha, 248
Dreissena rostriformis bugensis, 248
Drosophila melanogaster, 7, 161–162
Drug development, 288
Dunaliella salina, 184, 305–306
Dye, 82, 321, 363
391
Chordate, 120, 144, 167–168
Chromalveolates, 181–182, 301
Ciliates, 182
Ciona intestinalis, 168, 307
Cladism/cladistic approach, 122–124
Clavibacter michiganensis, 318
Climate change, 2, 23, 93, 97–98, 100,
103–105, 204
Clone, 10, 36, 47–48, 51, 75, 317
Clustering, 53–54, 132, 326–330, 340, 365,
367–368
Clusters of euKaryotic Orthologous Groups
or Clusters of Orthologous Groups
(COG/KOG), 329–330
Clytia hemisphaerica, 155
Cnidarian, 128–131, 149, 154–161, 164
Coccolithophores, 182, 187, 197
Coccolithovirus EhV-86, 190, 300
Codfish, 20, 76, 223, 260
Coelom, 121–123, 129–132, 134, 136
Coelomata, 129–131, 136
Cohort, 250
Colony blot, 49
Colony formation, 146, 149–150
Common garden experiments, 5
Common mussel, 98, 248
Communication technology, 7
Community Cyberinfrastructure for Advanced
Marine Microbial Ecology Research
and Analysis (CAMERA), 50, 55,
61, 296
Community genomics, 35
Community Sequencing Program, 55
Comparative genomics, 55, 90, 213, 218, 291,
326, 342–355
Comparative metagenomics, 51, 58–60
Complex adaptive systems (CAS) approach, 22
Complexity, 6, 52, 97–98, 121–122,
136, 143–171, 188, 204, 229,
235, 305
Composite taxon, 131–132
Computational genomics, data, 370
Computing technology, 7
Congregibacter litoralis, 11
Consortium for the Barcoding of Life
(CBOL), 16
Contig, 36
Convergent evolution, 80
Coregonus clupeaformis, 88, 260–262
Cosmetic, 199
Cosmid, 11, 37, 46, 48
Crassostrea gigas, 11, 18, 20, 87, 94, 214, 225,
245, 248–249
Crassostrea virginica, 11, 79
Critica, 56, 333–334
Crustacean, 2, 119, 161–162, 166
Cryoprotectant, 49
Cryptic, 2–3, 8, 12, 153–154, 160–161,
196, 250
Cryptomonads, 198
Cryptophyceae, 12, 186
Cryptophytes, 182, 198
Ctenophores, 122–123, 126, 136–137
Cubozoan, 160
Cyanidioschyzon merolae, 185, 192, 304–306
Cyanophora paradoxa, 185, 197
Cyprinus carpio, 228
Cytochrome c oxidase subunit, 1 (CO1),
9, 16
Cytotoxins, 191
D
ddNTP, 316
Debaryomyces hansenii, 306
(2E, 4E/Z)-decadienal (DD), 194
Degenerate PCR, 81
Dehalobium chlorocoercia, 295
Delta, 147, 225
Denaturing gradient gel electrophoresis
(DGGE), 10, 19, 44
Density gradient centrifugation, 38–41
Deoxy-nucleotide (Dntp), 50, 319–320
Desulfotalea psychrophila, 295
Deuterostomes, 120, 122–123, 125, 132–135,
158, 166–167
Diatoms, 7, 12, 176, 186, 192, 194–198,
304, 306
Dicentrarchus labrax, 85, 87–88, 214
Dinoflagellates, 182–183, 187, 190, 198–199
Dinokaryon, 198
Directional selection, 88, 257
Diversity, 2, 4, 6–8, 10–11, 13–17, 21–23,
34–37, 51–52, 57–60, 78–80, 120, 132,
146, 150, 155, 161–162, 170–171, 224,
251, 288–290, 301
DNA amplification, 35, 38–39, 42, 44,
238, 320
DNA barcoding, 2, 5, 9, 15–17, 20
DNA isolation, 38, 41, 48
Domoic acid, 191
Dreissena polymorpha, 248
Dreissena rostriformis bugensis, 248
Drosophila melanogaster, 7, 161–162
Drug development, 288
Dunaliella salina, 184, 305–306
Dye, 82, 321, 363