392
Index
E
Ecdysozoa, 125–126, 129–131, 133–134, 136,
161–163
Echinidae, 19
Echinocardium cordatum, 19
Ecogenomics, 22, 35
Ecosystem diversity, 6
Ecosystem functioning, 1–2, 4, 8, 10, 14,
23, 60
Ecosystem resilience, 8, 104
Ecosystem services, 1–2, 4, 14, 22, 24
Ecotoxicology, 99, 104–105, 238
Ectocarpales, 200
Ectocarpus siliculosus, 186, 192, 195, 200
Ectoderm, 137, 154, 157–158, 160
Ectotherm, 97
Eelgrass, sea-grass, 23, 77, 92, 185, 203
Eleutheria dichotoma, 157
Embryogenesis, 166, 168, 200
Emiliania huxleyi, 190, 192, 331
Emulsion PCR, 50, 318–319
Endoderm, 154, 158–160
Endosymbiont, 182–183, 198
Endosymbiosis, 183, 197–198
Engraulis encrasicolus, 20
Enrichment, 33–40, 48, 321
Ensis sp, 18
Environmental gene tag, 58
Environmental Gene Tags (EGT), 58
Environmental genomics, 11, 35, 96–105
Environmental sequencing, 189, 204
Enzyme Linked Immuno Sorbent Assay
(ELISA), 239, 244
Epitope, 238
Escherichia coli, 317, 321–322
EsV-1, 200
Eucheuma, 202
Euglena gracilis, 198
Euglenids, 183
Euglenophytes, 183
Eukaryote phylogeny, 146, 183, 189, 203, 293
Eumetazoan, 149, 151–152
European flat oyster, 87, 224–225
European flounder, 260
European sea bass, 85, 87–88, 214, 217–218,
240–241, 257, 260
Evolution, 21–22, 80, 84, 88, 90–91, 93, 102,
121–122, 124–128, 148, 150–153, 159,
162–165, 180–183, 187, 203, 249–251,
256–258, 263
Evolutionary innovation, 155, 158
Expressed Sequence Tags (EST), 7, 74–78,
81–82, 84–86, 132, 134–135, 155,
162–164, 197–198, 214–217, 220, 222,
241, 247–249, 326–331, 348–350,
356–357
Expressed sequence, 75, 162, 214, 326, 350
Expression Quantitative Trait Loci (eQTL),
262
Extended Markup Language (XML), 324, 369
Extracellular matrix, 147, 150, 153–154
Extremophile, 202, 304
F
Fertiliser, 199
Filtration, 38–39
Fish Barcode of Life (FISH-BOL), 16
Fish stock structure, 249–264
Fisheries, 15–17, 84, 90, 213–264
Florideophyte, 202–203
Fluorescence in situ hybridization (FISH), 13,
16, 40, 44, 188
Fosmid, 11, 35–38, 44, 46–48, 52, 317–318
Founder effect, 84, 224
Fragilariopsis cylindrus, 186, 192, 195
Freshwater mussels, 248
Fucales, 199–200
Fucoid seaweeds, 200–201
Fucus serratus, 331
Fucus vesiculosus, 331
Fuluvia mutica, 19
Functional analysis, 5, 35, 150, 152, 160, 214,
326, 328–329
Functional annotation, 54–55, 333, 343–345
Functional diversity, 6, 15, 23, 33, 51, 58–61
Fundulus heteroclitus, 260
Fungi, 130, 147, 193, 291–292, 299, 301, 306
Fusarium sp, 306
G
Gadus morhua, 20, 76–77, 221, 260
Galdieria sulphuraria, 185, 202
Gametophyte, 200–201
Gasterosteus aculeatus, 88, 214, 257
Gastropoda, 19
Gastrulation, 152, 158
GenDB, 56–57, 338, 355
Gene chip, 7, 76, 81–82, 98–100
Gene expression, 1, 5–7, 45, 61, 82, 84, 87,
94–102, 168, 201, 227–228, 241–242,
258, 356–358, 361–370
Gene expression profiling, 104, 239, 242
Gene knockdown, 146, 201
Gene library, 48–49
Gene prediction, 33, 54–56, 58, 315, 325,
331–337, 352
Index
E
Ecdysozoa, 125–126, 129–131, 133–134, 136,
161–163
Echinidae, 19
Echinocardium cordatum, 19
Ecogenomics, 22, 35
Ecosystem diversity, 6
Ecosystem functioning, 1–2, 4, 8, 10, 14,
23, 60
Ecosystem resilience, 8, 104
Ecosystem services, 1–2, 4, 14, 22, 24
Ecotoxicology, 99, 104–105, 238
Ectocarpales, 200
Ectocarpus siliculosus, 186, 192, 195, 200
Ectoderm, 137, 154, 157–158, 160
Ectotherm, 97
Eelgrass, sea-grass, 23, 77, 92, 185, 203
Eleutheria dichotoma, 157
Embryogenesis, 166, 168, 200
Emiliania huxleyi, 190, 192, 331
Emulsion PCR, 50, 318–319
Endoderm, 154, 158–160
Endosymbiont, 182–183, 198
Endosymbiosis, 183, 197–198
Engraulis encrasicolus, 20
Enrichment, 33–40, 48, 321
Ensis sp, 18
Environmental gene tag, 58
Environmental Gene Tags (EGT), 58
Environmental genomics, 11, 35, 96–105
Environmental sequencing, 189, 204
Enzyme Linked Immuno Sorbent Assay
(ELISA), 239, 244
Epitope, 238
Escherichia coli, 317, 321–322
EsV-1, 200
Eucheuma, 202
Euglena gracilis, 198
Euglenids, 183
Euglenophytes, 183
Eukaryote phylogeny, 146, 183, 189, 203, 293
Eumetazoan, 149, 151–152
European flat oyster, 87, 224–225
European flounder, 260
European sea bass, 85, 87–88, 214, 217–218,
240–241, 257, 260
Evolution, 21–22, 80, 84, 88, 90–91, 93, 102,
121–122, 124–128, 148, 150–153, 159,
162–165, 180–183, 187, 203, 249–251,
256–258, 263
Evolutionary innovation, 155, 158
Expressed Sequence Tags (EST), 7, 74–78,
81–82, 84–86, 132, 134–135, 155,
162–164, 197–198, 214–217, 220, 222,
241, 247–249, 326–331, 348–350,
356–357
Expressed sequence, 75, 162, 214, 326, 350
Expression Quantitative Trait Loci (eQTL),
262
Extended Markup Language (XML), 324, 369
Extracellular matrix, 147, 150, 153–154
Extremophile, 202, 304
F
Fertiliser, 199
Filtration, 38–39
Fish Barcode of Life (FISH-BOL), 16
Fish stock structure, 249–264
Fisheries, 15–17, 84, 90, 213–264
Florideophyte, 202–203
Fluorescence in situ hybridization (FISH), 13,
16, 40, 44, 188
Fosmid, 11, 35–38, 44, 46–48, 52, 317–318
Founder effect, 84, 224
Fragilariopsis cylindrus, 186, 192, 195
Freshwater mussels, 248
Fucales, 199–200
Fucoid seaweeds, 200–201
Fucus serratus, 331
Fucus vesiculosus, 331
Fuluvia mutica, 19
Functional analysis, 5, 35, 150, 152, 160, 214,
326, 328–329
Functional annotation, 54–55, 333, 343–345
Functional diversity, 6, 15, 23, 33, 51, 58–61
Fundulus heteroclitus, 260
Fungi, 130, 147, 193, 291–292, 299, 301, 306
Fusarium sp, 306
G
Gadus morhua, 20, 76–77, 221, 260
Galdieria sulphuraria, 185, 202
Gametophyte, 200–201
Gasterosteus aculeatus, 88, 214, 257
Gastropoda, 19
Gastrulation, 152, 158
GenDB, 56–57, 338, 355
Gene chip, 7, 76, 81–82, 98–100
Gene expression, 1, 5–7, 45, 61, 82, 84, 87,
94–102, 168, 201, 227–228, 241–242,
258, 356–358, 361–370
Gene expression profiling, 104, 239, 242
Gene knockdown, 146, 201
Gene library, 48–49
Gene prediction, 33, 54–56, 58, 315, 325,
331–337, 352