390
Index
Aureococcus anophagefferens, 186, 191, 195
Automatic annotation systems, 57
Autotroph, 188, 304
Axenic cultures, 191
Azoarcus, 318
B
Bacillus halodurans, 295
Bacillus subtilis, 42
Bacteria, 9, 12, 34, 41, 44, 80, 101, 146, 150,
189, 194, 198, 238, 241, 246–248, 252,
288, 292, 295, 299, 305, 316, 318, 331,
341, 344, 349–350, 355
Bacterial artificial chromosome (BAC), 11,
36–38, 41, 46–48, 89, 162, 164, 215,
219–220, 243, 248, 317–318
Bacteriophage φ, 29, 36, 42
Bacteriophage λ, 35, 45–46
Balaenoptera acutorostrata, 259
Balanus amphitrite, 331
Balanus glandula, 19
Balanus sp, 19
Bangiophyte, 202
Barbatia (Abarbatia) virescens, 19
Barcode of Life Database (BOLD), 16, 216
Barcoding, 2–3, 5, 9, 15–17, 20, 81–82, 239,
250, 259
Basic local alignment search tool (BLAST), 53,
58, 81, 318, 327, 328–330, 333–334,
338, 344
BASys, 55
Bathymodiolus azoricus, 18, 76, 102, 248
Bayesian classifier, 53
Bayesian inference, 53, 128
Beggiatoa, 34, 39, 51, 60
Bigelowiella natans, 186, 198
Bilaterians, 122–123, 125–126, 129–130,
134–136, 147, 149, 151, 153–158, 160
Binning, 33, 37, 51–54, 58
Biodiversity, 1–25, 73, 80, 83–84, 93, 104,
188–189, 204, 252
Biofuel, 292, 301–304
Bioinformatics, 34, 81, 83, 184, 262, 317–318,
322–326, 337, 369
BioJava, BioPerl, 326
Biomolecules, 179, 199, 306
Biotechnology, 16, 48, 287–307, 318, 326,
347, 357
Bipartite target peptides, 183
Blastopore, 154, 156, 158–159
Blue mussel, 18–19, 76, 87, 92, 214, 221, 248
Blue-biotechnology, 287
Body axis, 150–154, 156
Body plan, 120–122, 125–126, 134, 150,
152–154, 156, 166, 171
Bone morphogenetic proteins, 156
Boops boops, 20
Botryllus schlosseri, 11
Bottleneck, 79, 84, 263, 323, 358
Breeding, 88, 195, 222–225, 233, 250–251,
254, 263
Brown algae, 7, 93, 182, 199–202
5-bromo-2’-deoxyuridine, 40
Brown trout, 233, 260
Bryozoan, 2–3
C
Caenorhabditis elegans, 7, 161–163, 354
Calcium carbonate, 103, 197
Candidate genes, 4, 83, 87, 91–92, 95–96, 99,
105, 222, 225, 243, 248, 257, 262, 361
Candidatus Carsonella ruddii, 48
Carcinus maenas, 19
Cariids, 18
Carp, 99, 228, 241
Carrageenans, 199
Celera Assembler, 52
Cell adhesion, 147, 149–151, 161
Cell death, 194
Cell differentiation, 146, 150
Cell type, 75, 104, 149–150, 152, 163, 165,
169–170, 326–327
Celleporella augusta, 2
Celleporella carolhensis, 2
Celleporella hyalina, 2
Celleporella, 2
Centric, 59, 192, 194–195, 290
Cephalochordates, 132–133, 167, 169
Cephalopod, 119–120, 163
Cerastoderma edule, 20
Cercozoa, 198
Chaetognatha, 123, 133
Channel catfish, 216, 240, 242–243, 260
Character orientation, 122, 137
Chinook salmon, 78, 86, 254, 259
Chlamydomonas reinhardtii, 185, 192,
303–305
Chlamys (Azumapecten) farreri nipponensis,
19
Chlamys farreri, 20, 220
Chlorarachniophytes, 182–183, 198
Chlorella sp, 184, 305
Chloroplast, 180, 195, 202, 341–342
Choanocyte, 146, 150
Choanoflagellates, 129, 146–151
Chondrus crispus, 185, 192, 202, 301
Index
Aureococcus anophagefferens, 186, 191, 195
Automatic annotation systems, 57
Autotroph, 188, 304
Axenic cultures, 191
Azoarcus, 318
B
Bacillus halodurans, 295
Bacillus subtilis, 42
Bacteria, 9, 12, 34, 41, 44, 80, 101, 146, 150,
189, 194, 198, 238, 241, 246–248, 252,
288, 292, 295, 299, 305, 316, 318, 331,
341, 344, 349–350, 355
Bacterial artificial chromosome (BAC), 11,
36–38, 41, 46–48, 89, 162, 164, 215,
219–220, 243, 248, 317–318
Bacteriophage φ, 29, 36, 42
Bacteriophage λ, 35, 45–46
Balaenoptera acutorostrata, 259
Balanus amphitrite, 331
Balanus glandula, 19
Balanus sp, 19
Bangiophyte, 202
Barbatia (Abarbatia) virescens, 19
Barcode of Life Database (BOLD), 16, 216
Barcoding, 2–3, 5, 9, 15–17, 20, 81–82, 239,
250, 259
Basic local alignment search tool (BLAST), 53,
58, 81, 318, 327, 328–330, 333–334,
338, 344
BASys, 55
Bathymodiolus azoricus, 18, 76, 102, 248
Bayesian classifier, 53
Bayesian inference, 53, 128
Beggiatoa, 34, 39, 51, 60
Bigelowiella natans, 186, 198
Bilaterians, 122–123, 125–126, 129–130,
134–136, 147, 149, 151, 153–158, 160
Binning, 33, 37, 51–54, 58
Biodiversity, 1–25, 73, 80, 83–84, 93, 104,
188–189, 204, 252
Biofuel, 292, 301–304
Bioinformatics, 34, 81, 83, 184, 262, 317–318,
322–326, 337, 369
BioJava, BioPerl, 326
Biomolecules, 179, 199, 306
Biotechnology, 16, 48, 287–307, 318, 326,
347, 357
Bipartite target peptides, 183
Blastopore, 154, 156, 158–159
Blue mussel, 18–19, 76, 87, 92, 214, 221, 248
Blue-biotechnology, 287
Body axis, 150–154, 156
Body plan, 120–122, 125–126, 134, 150,
152–154, 156, 166, 171
Bone morphogenetic proteins, 156
Boops boops, 20
Botryllus schlosseri, 11
Bottleneck, 79, 84, 263, 323, 358
Breeding, 88, 195, 222–225, 233, 250–251,
254, 263
Brown algae, 7, 93, 182, 199–202
5-bromo-2’-deoxyuridine, 40
Brown trout, 233, 260
Bryozoan, 2–3
C
Caenorhabditis elegans, 7, 161–163, 354
Calcium carbonate, 103, 197
Candidate genes, 4, 83, 87, 91–92, 95–96, 99,
105, 222, 225, 243, 248, 257, 262, 361
Candidatus Carsonella ruddii, 48
Carcinus maenas, 19
Cariids, 18
Carp, 99, 228, 241
Carrageenans, 199
Celera Assembler, 52
Cell adhesion, 147, 149–151, 161
Cell death, 194
Cell differentiation, 146, 150
Cell type, 75, 104, 149–150, 152, 163, 165,
169–170, 326–327
Celleporella augusta, 2
Celleporella carolhensis, 2
Celleporella hyalina, 2
Celleporella, 2
Centric, 59, 192, 194–195, 290
Cephalochordates, 132–133, 167, 169
Cephalopod, 119–120, 163
Cerastoderma edule, 20
Cercozoa, 198
Chaetognatha, 123, 133
Channel catfish, 216, 240, 242–243, 260
Character orientation, 122, 137
Chinook salmon, 78, 86, 254, 259
Chlamydomonas reinhardtii, 185, 192,
303–305
Chlamys (Azumapecten) farreri nipponensis,
19
Chlamys farreri, 20, 220
Chlorarachniophytes, 182–183, 198
Chlorella sp, 184, 305
Chloroplast, 180, 195, 202, 341–342
Choanocyte, 146, 150
Choanoflagellates, 129, 146–151
Chondrus crispus, 185, 192, 202, 301