Index
A
Abra spp, 18
Accession number, 216, 340, 348–349, 352
Acid Mine Drainage (AMD), 36, 58
Aciduliprofundum boonei, 294
Acoel flatworms, 121, 126, 133–136
Acropora millipora, 155
Adamussium colbecki, 19
Adaptive divergence, 89, 151, 261
Aequorea victoria, 306
Aeropyrum pernix, 294
Agaricia agaricites, 18
Agars, 199
Alcanivorax borkumensis, 295, 318
Aldehydes, 194
Alexandrium, 190–191, 198–199
Algae, 2, 7, 34, 93, 179–204, 246, 288, 299,
301–306
Algal bloom, 180, 190–191, 195
Alginates, 199
Alignment, 58, 127–128, 254, 329, 335,
337–338, 344
All Birds Barcoding Initiative (ABBI), 16
Allozyme, 215, 254
Alternative splicing, 161, 164–166, 241,
249, 336
Alteromonas macleodii, 295
Alveolates, 181–182, 188
Amnesic shellfish poisoning (ASP), 191
Amphimedon queenslandica, 151–152
Amphipod, 162
Amphiura filiformis, 19
Amplified fragment length polymorphism
(AFLP), 14, 20, 74, 78–80, 85–87, 89,
93, 215–218, 223
Ancestral complexity (loss of), 169
Ancestrality, 164
Animal phylogeny, 121–122, 124–126,
128–130, 134, 136–137, 143
Annelid, 128, 135, 163–164
Annotation system, 56, 328, 338, 345–346
Anomia chinensis, 19
Anthozoan, 122, 155–157, 159
Anthropomorphic, 100
Antibiotics, 237, 306
Antifreeze, 102
Antitumor activity, 191
Apical organ, 155
Apicomplexans, 182
Apiospora montagnei, 306
Aplysia californica, 163
Application Programming Interface (API),
57, 324
Aquaculture, 73, 87–88, 93–95, 99, 105,
213–264, 288
Aquifex aeolicus, 295
Arabidopsis thaliana, 7, 260, 336
Arachne, 52
ARB software suite, 58
Archaea, 9–11, 21, 48, 54, 290–294, 296, 299,
301, 316, 331, 349
Archaecoelomate theory, 123
Aristotle, 119
ARTEMIS, 56, 338
Arthropod, 121–125, 161–163
Articulata, 123–124
Ascertainment bias, 78, 255
Ascidian, 120, 164, 168–169
Ascochyta salicorniae, 306
Asian sea bass, 219
Assembly, 33, 37, 44–45, 51–54, 58, 61, 121,
135, 185–186, 189, 219–220, 317–318,
323, 326, 327–330
Asterias amurensis, 19
Atlantic oyster, 11, 79
Atlantic salmon, 77–79, 84, 214, 217, 223,
225, 229, 233, 240, 242, 254, 257,
259–260
389
A
Abra spp, 18
Accession number, 216, 340, 348–349, 352
Acid Mine Drainage (AMD), 36, 58
Aciduliprofundum boonei, 294
Acoel flatworms, 121, 126, 133–136
Acropora millipora, 155
Adamussium colbecki, 19
Adaptive divergence, 89, 151, 261
Aequorea victoria, 306
Aeropyrum pernix, 294
Agaricia agaricites, 18
Agars, 199
Alcanivorax borkumensis, 295, 318
Aldehydes, 194
Alexandrium, 190–191, 198–199
Algae, 2, 7, 34, 93, 179–204, 246, 288, 299,
301–306
Algal bloom, 180, 190–191, 195
Alginates, 199
Alignment, 58, 127–128, 254, 329, 335,
337–338, 344
All Birds Barcoding Initiative (ABBI), 16
Allozyme, 215, 254
Alternative splicing, 161, 164–166, 241,
249, 336
Alteromonas macleodii, 295
Alveolates, 181–182, 188
Amnesic shellfish poisoning (ASP), 191
Amphimedon queenslandica, 151–152
Amphipod, 162
Amphiura filiformis, 19
Amplified fragment length polymorphism
(AFLP), 14, 20, 74, 78–80, 85–87, 89,
93, 215–218, 223
Ancestral complexity (loss of), 169
Ancestrality, 164
Animal phylogeny, 121–122, 124–126,
128–130, 134, 136–137, 143
Annelid, 128, 135, 163–164
Annotation system, 56, 328, 338, 345–346
Anomia chinensis, 19
Anthozoan, 122, 155–157, 159
Anthropomorphic, 100
Antibiotics, 237, 306
Antifreeze, 102
Antitumor activity, 191
Apical organ, 155
Apicomplexans, 182
Apiospora montagnei, 306
Aplysia californica, 163
Application Programming Interface (API),
57, 324
Aquaculture, 73, 87–88, 93–95, 99, 105,
213–264, 288
Aquifex aeolicus, 295
Arabidopsis thaliana, 7, 260, 336
Arachne, 52
ARB software suite, 58
Archaea, 9–11, 21, 48, 54, 290–294, 296, 299,
301, 316, 331, 349
Archaecoelomate theory, 123
Aristotle, 119
ARTEMIS, 56, 338
Arthropod, 121–125, 161–163
Articulata, 123–124
Ascertainment bias, 78, 255
Ascidian, 120, 164, 168–169
Ascochyta salicorniae, 306
Asian sea bass, 219
Assembly, 33, 37, 44–45, 51–54, 58, 61, 121,
135, 185–186, 189, 219–220, 317–318,
323, 326, 327–330
Asterias amurensis, 19
Atlantic oyster, 11, 79
Atlantic salmon, 77–79, 84, 214, 217, 223,
225, 229, 233, 240, 242, 254, 257,
259–260
389