210
S.M. Coelho et al.
Piganeau G, Desdevises Y, Derelle E, Moreau H (2008) Picoeukaryotic sequences in the Sargasso
Sea metagenome. Genome Biol 9:R5
Piganeau G, Moreau H (2007) Screening the Sargasso Sea metagenome for data to investigate
genome evolution in Ostreococcus (Prasinophyceae, Chlorophyta). Gene 406:184–190
Reddy CRK, Iima M, Fujita Y (1992) Induction of fastgrowing and morphologically different strains through intergeneric protoplast fusions of Ulva and Enteromorpha (Ulvales,
Chlorophyta). J Appl Phycol 4:57–65
Reyes-Prieto A, Moustafa A, Bhattacharya D (2008) Multiple genes of apparent algal origin
suggest ciliates may once have been photosynthetic. Curr Biol 18:956–962
Reyes-Prieto A, Weber AP, Bhattacharya D (2007) The origin and establishment of the plastid in
algae and plants. Annu Rev Genet 41:147–168
Rodriguez F, Derelle E, Guillou L, Le Gall F, Vaulot D, Moreau H (2005) Ecotype diversity in
the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae). Environ Microbiol 7:
853–859
Roeder V, Collen J, Rousvoal S, Corre E, Leblanc C, Boyen C (2005) Identification of stress gene
transcripts in Laminaria digitata (Phaeophyceae) protoplast cultures by expressed sequence tag
analysis. J Phycol 41:1227–1235
Romari K, Vaulot D (2004) Composition and temporal variability of picoeukaryote communities at
a coastal site of the English Channel from 18S rDNA sequences. Limnol Oceanogr 49:784–798
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA,
Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, Thorpe
J, Freeman J, Andrews-Pfannkoch C, Venter JE, Li K, Kravitz S, Heidelberg JF, Utterback T,
Rogers YH, Falcón LI, Souza V, Bonilla-Rosso G, Eguiarte LE, Karl DM, Sathyendranath S,
Platt T, Bermingham E, Gallardo V, Tamayo-Castillo G, Ferrari MR, Strausberg RL, Nealson
K, Friedman R, Frazier M, Venter JC (2007) The Sorcerer II global ocean sampling expedition:
northwest Atlantic through eastern tropical Pacific. PLoS Biol 5:398–430
Serrao EA, Pearson G, Kautsky L, Brawley SH (1996) Successful external fertilization in turbulent
environments. Proc Natl Acad Sci U S A 93:5286–5290
Shimizu Y, Kitade Y, Saga N (2004) A nonradioactive whole-mount in situ hybridization protocol
for Porphyra (Rhodophyta) gametophytic germlings. J Appl Phycol 16:329–333
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, Manfredonia A, Falciatore
A, Bowler C (2007) Molecular toolbox for studying diatom biology in Phaeodactylum
tricornutum. Gene 406:23–35
Siegel BZ, Siegel SM (1973) The chemical composition of algal cell walls. CRC Crit Rev
Microbiol 3:1–26
Slapeta J, López-García P, Moreira D (2006) Global dispersal and ancient cryptic species in the
smallest marine eukaryotes. Mol Biol Evol 23:23–29
Spector DL (1984) Dinoflagellate nuclei. In: Spector DL (ed) Dinoflagellates, Academic Press Inc,
New York, pp 107–147
Suttle CA (2005) Viruses in the sea. Nature 437:356–361
Tanikawa N, Akimoto H, Ogoh K, Chun W, Ohmiya Y (2004) Expressed sequence tag analysis of
the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 80:31–35
Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RH, Aerts A, Arredondo FD, Baxter L, Bensasson
D, Beynon JL, Chapman J, Damasceno CM, Dorrance AE, Dou D, Dickerman AW, Dubchak
IL, Garbelotto M, Gijzen M, Gordon SG, Govers F, Grunwald NJ, Huang W, Ivors KL,
Jones RW, Kamoun S, Krampis K, Lamour KH, Lee MK, McDonald WH, Medina M, Meijer
HJ, Nordberg EK, Maclean DJ, Ospina-Giraldo MD, Morris PF, Phuntumart V, Putnam NH,
Rash S, Rose JK, Sakihama Y, Salamov AA, Savidor A, Scheuring CF, Smith BM, Sobral
BW, Terry A, Torto-Alalibo TA, Win J, Xu Z, Zhang H, Grigoriev IV, Rokhsar DS, Boore
JL (2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of
pathogenesis. Science 313:1261–1266
Vaulot D, Eikrem W, Viprey M, Moreau H (2008) The diversity of small eukaryotic phytoplankton
(≤3 mum) in marine ecosystems. FEMS Microbiol Rev 32:795–820
S.M. Coelho et al.
Piganeau G, Desdevises Y, Derelle E, Moreau H (2008) Picoeukaryotic sequences in the Sargasso
Sea metagenome. Genome Biol 9:R5
Piganeau G, Moreau H (2007) Screening the Sargasso Sea metagenome for data to investigate
genome evolution in Ostreococcus (Prasinophyceae, Chlorophyta). Gene 406:184–190
Reddy CRK, Iima M, Fujita Y (1992) Induction of fastgrowing and morphologically different strains through intergeneric protoplast fusions of Ulva and Enteromorpha (Ulvales,
Chlorophyta). J Appl Phycol 4:57–65
Reyes-Prieto A, Moustafa A, Bhattacharya D (2008) Multiple genes of apparent algal origin
suggest ciliates may once have been photosynthetic. Curr Biol 18:956–962
Reyes-Prieto A, Weber AP, Bhattacharya D (2007) The origin and establishment of the plastid in
algae and plants. Annu Rev Genet 41:147–168
Rodriguez F, Derelle E, Guillou L, Le Gall F, Vaulot D, Moreau H (2005) Ecotype diversity in
the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae). Environ Microbiol 7:
853–859
Roeder V, Collen J, Rousvoal S, Corre E, Leblanc C, Boyen C (2005) Identification of stress gene
transcripts in Laminaria digitata (Phaeophyceae) protoplast cultures by expressed sequence tag
analysis. J Phycol 41:1227–1235
Romari K, Vaulot D (2004) Composition and temporal variability of picoeukaryote communities at
a coastal site of the English Channel from 18S rDNA sequences. Limnol Oceanogr 49:784–798
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA,
Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, Thorpe
J, Freeman J, Andrews-Pfannkoch C, Venter JE, Li K, Kravitz S, Heidelberg JF, Utterback T,
Rogers YH, Falcón LI, Souza V, Bonilla-Rosso G, Eguiarte LE, Karl DM, Sathyendranath S,
Platt T, Bermingham E, Gallardo V, Tamayo-Castillo G, Ferrari MR, Strausberg RL, Nealson
K, Friedman R, Frazier M, Venter JC (2007) The Sorcerer II global ocean sampling expedition:
northwest Atlantic through eastern tropical Pacific. PLoS Biol 5:398–430
Serrao EA, Pearson G, Kautsky L, Brawley SH (1996) Successful external fertilization in turbulent
environments. Proc Natl Acad Sci U S A 93:5286–5290
Shimizu Y, Kitade Y, Saga N (2004) A nonradioactive whole-mount in situ hybridization protocol
for Porphyra (Rhodophyta) gametophytic germlings. J Appl Phycol 16:329–333
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, Manfredonia A, Falciatore
A, Bowler C (2007) Molecular toolbox for studying diatom biology in Phaeodactylum
tricornutum. Gene 406:23–35
Siegel BZ, Siegel SM (1973) The chemical composition of algal cell walls. CRC Crit Rev
Microbiol 3:1–26
Slapeta J, López-García P, Moreira D (2006) Global dispersal and ancient cryptic species in the
smallest marine eukaryotes. Mol Biol Evol 23:23–29
Spector DL (1984) Dinoflagellate nuclei. In: Spector DL (ed) Dinoflagellates, Academic Press Inc,
New York, pp 107–147
Suttle CA (2005) Viruses in the sea. Nature 437:356–361
Tanikawa N, Akimoto H, Ogoh K, Chun W, Ohmiya Y (2004) Expressed sequence tag analysis of
the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 80:31–35
Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RH, Aerts A, Arredondo FD, Baxter L, Bensasson
D, Beynon JL, Chapman J, Damasceno CM, Dorrance AE, Dou D, Dickerman AW, Dubchak
IL, Garbelotto M, Gijzen M, Gordon SG, Govers F, Grunwald NJ, Huang W, Ivors KL,
Jones RW, Kamoun S, Krampis K, Lamour KH, Lee MK, McDonald WH, Medina M, Meijer
HJ, Nordberg EK, Maclean DJ, Ospina-Giraldo MD, Morris PF, Phuntumart V, Putnam NH,
Rash S, Rose JK, Sakihama Y, Salamov AA, Savidor A, Scheuring CF, Smith BM, Sobral
BW, Terry A, Torto-Alalibo TA, Win J, Xu Z, Zhang H, Grigoriev IV, Rokhsar DS, Boore
JL (2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of
pathogenesis. Science 313:1261–1266
Vaulot D, Eikrem W, Viprey M, Moreau H (2008) The diversity of small eukaryotic phytoplankton
(≤3 mum) in marine ecosystems. FEMS Microbiol Rev 32:795–820