6 Genomics of Marine Algae
211
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I,
Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O,
Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO
(2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66–74
Waaland JR, Dickson LG, Watson BA (1990) Protoplast isolation and regeneration in the marine
alga Porpyra nereocystis. Plantation 181:522–528
Waaland JR, Stiller JW, Cheney DP (2004) Macroalgal candidates for genomics. J Phycol 40:26–33
Wilson WH, Schroeder DC, Allen MJ, Holden MTG, Parkhill J, Barrell BG, Churcher C, Hamlin
N, Mungall K, Norbertczak H, Quail MA, Price C, Rabbinowitsch E, Walker D, Craigon M,
Roy D, Ghazal P (2005) Complete Genome Sequence and Lytic Phase Transcription Profile of
a Coccolithovirus. Science 309:1090–1092
Worden AZ, Lee J-H, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle
E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald SM,
Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E,
Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas
S, Mayer KFX, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B,
Poliakov A, Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV,
Bhattacharya D, Goodenough EW, Van de Peer Y, Grigoriev IV (2009) Green Evolution
and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes. Science
324:268–272
Yan X, Fujita Y, Aruga Y (2000) Induction and characterization of pigmentation mutants in
Porphyra yezoensis (Bangiales, Rhodophyta). J Appl Phycol 12:69–81
Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM Jr, Patterson DJ,
Bhattacharya D, Katz LA (2008) Broadly sampled multigene trees of eukaryotes. BMC Evol
Biol 8:14
Yoon HS, Hackett JD, Bhattacharya D (2006) A genomic and phylogenetic perspective on
endosymbiosis and algal origin. J Appl Phycol 18:475–481
Yoon HS, Hackett JD, Ciniglia C, Pinto D, Bhattacharya D (2004) A molecular timeline for the
origin of photosynthetic eukaryotes. Mol Biol Evol 21:809–818
Zaslavskaia LA, Lippmeier JC, Kroth PG, Grossman AR, Apt KE (2000) Transformation of the
diatom Phaeodactylum tricornutum (Bacillariophyceae) with a variety of selectable marker and
reporter genes. J Phycol 36:379–386
Zaslavskaia LA, Lippmeier JC, Shih C, Ehrhardt D, Grossman AR, Apt KE (2001) Trophic
conversion of an obligate photoautotrophic organism through metabolic engineering. Science
292:2073–2075
Zhang Z, Green BR, Cavalier-Smith T (1999) Single gene circles in dinoflagellate chloroplast
genomes. Nature 400:155–159
211
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I,
Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O,
Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO
(2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66–74
Waaland JR, Dickson LG, Watson BA (1990) Protoplast isolation and regeneration in the marine
alga Porpyra nereocystis. Plantation 181:522–528
Waaland JR, Stiller JW, Cheney DP (2004) Macroalgal candidates for genomics. J Phycol 40:26–33
Wilson WH, Schroeder DC, Allen MJ, Holden MTG, Parkhill J, Barrell BG, Churcher C, Hamlin
N, Mungall K, Norbertczak H, Quail MA, Price C, Rabbinowitsch E, Walker D, Craigon M,
Roy D, Ghazal P (2005) Complete Genome Sequence and Lytic Phase Transcription Profile of
a Coccolithovirus. Science 309:1090–1092
Worden AZ, Lee J-H, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle
E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald SM,
Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E,
Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas
S, Mayer KFX, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B,
Poliakov A, Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV,
Bhattacharya D, Goodenough EW, Van de Peer Y, Grigoriev IV (2009) Green Evolution
and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes. Science
324:268–272
Yan X, Fujita Y, Aruga Y (2000) Induction and characterization of pigmentation mutants in
Porphyra yezoensis (Bangiales, Rhodophyta). J Appl Phycol 12:69–81
Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM Jr, Patterson DJ,
Bhattacharya D, Katz LA (2008) Broadly sampled multigene trees of eukaryotes. BMC Evol
Biol 8:14
Yoon HS, Hackett JD, Bhattacharya D (2006) A genomic and phylogenetic perspective on
endosymbiosis and algal origin. J Appl Phycol 18:475–481
Yoon HS, Hackett JD, Ciniglia C, Pinto D, Bhattacharya D (2004) A molecular timeline for the
origin of photosynthetic eukaryotes. Mol Biol Evol 21:809–818
Zaslavskaia LA, Lippmeier JC, Kroth PG, Grossman AR, Apt KE (2000) Transformation of the
diatom Phaeodactylum tricornutum (Bacillariophyceae) with a variety of selectable marker and
reporter genes. J Phycol 36:379–386
Zaslavskaia LA, Lippmeier JC, Shih C, Ehrhardt D, Grossman AR, Apt KE (2001) Trophic
conversion of an obligate photoautotrophic organism through metabolic engineering. Science
292:2073–2075
Zhang Z, Green BR, Cavalier-Smith T (1999) Single gene circles in dinoflagellate chloroplast
genomes. Nature 400:155–159