116
M.S. Clark et al.
Shank TM, Halanych KM (2007) Toward a mechanistic understanding of larval dispersal: insights
from genomic fingerprinting of the deep-sea hydrothermal vent tubeworm Riftia pachyptila.
Mar Ecol 28:25–35
Shapiro MD, Marks ME, Peichel CL, Blackman BK, Nereng BJ, Schluter D et al. (2004) Genetic
and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature
428:717–723
Sheader DL, Williams TD, Lyons BP, Chipman JK (2006) Oxidative stress response of European
flounder (Platichthys flesus) to cadmium determined by a custom cDNA microarray. Mar
Environ Res 62:33–44
Sicot FX, Mesnage M, Masselot M, Exposito JY, Garrone R, Deutsch J, Gaill F (2000) Molecular
adaptation to an extreme environment: origin of the thermal stability of the Pompeii worm
collagen. J Mol Biol 302:811–820
Slate J, David P, Dodds KG, Veenvliet BA, Glass BC, Broad TE et al. (2004) Understanding
the relationship between the inbreeding coefficient and multilocus heterozygosity: theoretical
expectations and empirical data. Heredity 93:255–265
Smith CT, Antonovich A, Templin WD, Elfstrom CM, Narum SR, Seeb LW (2007) Impacts of
marker class bias relative to locus-specific variability on population inferences in chinook
salmon: A comparison of single-nucleotide polymorphisms with short tandem repeats and
allozymes. Trans Am Fish Soc 136:1674–1687
Smith CT, Elfstrom CM, Seeb LW, Seeb JE (2005) Use of sequence data from rainbow trout and
Atlantic salmon for SNP detection in Pacific salmon. Mol Ecol 14:4193–4203
Somero GN (2002) Thermal physiology and vertical zonation of intertidal animals: optima, limits
and costs of living. Am J Physiol Integ Comp Biol 42:780–789
Stachowicz JJ, Terwin JR, Whitlatch RB, Osman RW (2002) Linking climate change and biological invasions: Ocean warming facilitates nonindigenous species invasions. Proc Natl Acad Sci
USA 99:15497–15500
Stern S, Dror T, Stolovicki E, Brenner N, Braun E (2007) Genome-wide transcriptional plasticity
underlies cellular adaptation to novel challenge. Mol Sys Biol Doi:10.1038/msb4100147
Stewart FJ, Cavanaugh CM (2006) Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)—
model systems for studies of symbiont–host adaptation. Antonie Leeuwenhoek 90:343–360
Stinchcombe JR, Hoekstra HE (2008) Combining population genomics and quantitative genetics:
finding the genes underlying ecologically important traits. Heredity 100:158–170
Stolovitzky GA, Kundaje A, Held GA, Duggar KH, Haudenschild CD, Zhou D, Vasicek TJ, Smith
KD, Aderem A, Roach JC (2005) Proc Natl Acad Sci USA 102:1402–1407
Storz JF (2005) Using genome scans of DNA polymorphism to infer adaptive population
divergence. Mol Ecol 14:671–688
Streelman JT, Kocher TD (2002) Microsatellite variation associated with prolactin expression and
growth of salt-challenged tilapia. Physiol Genom 9:1–4
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (1997) Construction
and characterization of a full length-enriched and a 5 -end-enriched cDNA library. Gene 1–2:
149–156
Swanson-Wagner RA, Jia Y, De Cook R, Borsuk LA, Nettleton D, Schnable PS (2006) All possible
modes of gene action are observed in a global comparison of gene expression in a maize F-1
hybrid and its inbred parents. Proc Natl Acad Sci USA 103:6805–6810
Tabor HK, Risch NJ, Myers RM (2002) Candidate gene approaches for studying complex genetic
traits: practical considerations. Nat Rev Genet 3:391–397
Tanguy A, Bierne N, Saavedra C, Pina B, Bachère E, Kube M, Bazin E, Bonhomme F, Boudry
P, Boulo V, Boutet I, Cancela L, Dossat C, Favrel P, Huvet A, Jarque S, Jollivet D, Klages S,
Lapegue S, Leite R, Moal J, Moraga D, Reinhardt R, Samain J-F, Zouros E, Canario A (2008)
Increasing genomic information in bivalves through new EST collections in four species:
Development of new genetic markers for environmental studies and genome evolution. Gene
408:27–36
Tao WJ, Boulding EG (2003) Associations between single nucleotide polymorphisms in candidate
genes and growth rate in Arctic charr (Salvelinus alpinus L. Heredity 91:60–69
M.S. Clark et al.
Shank TM, Halanych KM (2007) Toward a mechanistic understanding of larval dispersal: insights
from genomic fingerprinting of the deep-sea hydrothermal vent tubeworm Riftia pachyptila.
Mar Ecol 28:25–35
Shapiro MD, Marks ME, Peichel CL, Blackman BK, Nereng BJ, Schluter D et al. (2004) Genetic
and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature
428:717–723
Sheader DL, Williams TD, Lyons BP, Chipman JK (2006) Oxidative stress response of European
flounder (Platichthys flesus) to cadmium determined by a custom cDNA microarray. Mar
Environ Res 62:33–44
Sicot FX, Mesnage M, Masselot M, Exposito JY, Garrone R, Deutsch J, Gaill F (2000) Molecular
adaptation to an extreme environment: origin of the thermal stability of the Pompeii worm
collagen. J Mol Biol 302:811–820
Slate J, David P, Dodds KG, Veenvliet BA, Glass BC, Broad TE et al. (2004) Understanding
the relationship between the inbreeding coefficient and multilocus heterozygosity: theoretical
expectations and empirical data. Heredity 93:255–265
Smith CT, Antonovich A, Templin WD, Elfstrom CM, Narum SR, Seeb LW (2007) Impacts of
marker class bias relative to locus-specific variability on population inferences in chinook
salmon: A comparison of single-nucleotide polymorphisms with short tandem repeats and
allozymes. Trans Am Fish Soc 136:1674–1687
Smith CT, Elfstrom CM, Seeb LW, Seeb JE (2005) Use of sequence data from rainbow trout and
Atlantic salmon for SNP detection in Pacific salmon. Mol Ecol 14:4193–4203
Somero GN (2002) Thermal physiology and vertical zonation of intertidal animals: optima, limits
and costs of living. Am J Physiol Integ Comp Biol 42:780–789
Stachowicz JJ, Terwin JR, Whitlatch RB, Osman RW (2002) Linking climate change and biological invasions: Ocean warming facilitates nonindigenous species invasions. Proc Natl Acad Sci
USA 99:15497–15500
Stern S, Dror T, Stolovicki E, Brenner N, Braun E (2007) Genome-wide transcriptional plasticity
underlies cellular adaptation to novel challenge. Mol Sys Biol Doi:10.1038/msb4100147
Stewart FJ, Cavanaugh CM (2006) Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)—
model systems for studies of symbiont–host adaptation. Antonie Leeuwenhoek 90:343–360
Stinchcombe JR, Hoekstra HE (2008) Combining population genomics and quantitative genetics:
finding the genes underlying ecologically important traits. Heredity 100:158–170
Stolovitzky GA, Kundaje A, Held GA, Duggar KH, Haudenschild CD, Zhou D, Vasicek TJ, Smith
KD, Aderem A, Roach JC (2005) Proc Natl Acad Sci USA 102:1402–1407
Storz JF (2005) Using genome scans of DNA polymorphism to infer adaptive population
divergence. Mol Ecol 14:671–688
Streelman JT, Kocher TD (2002) Microsatellite variation associated with prolactin expression and
growth of salt-challenged tilapia. Physiol Genom 9:1–4
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (1997) Construction
and characterization of a full length-enriched and a 5 -end-enriched cDNA library. Gene 1–2:
149–156
Swanson-Wagner RA, Jia Y, De Cook R, Borsuk LA, Nettleton D, Schnable PS (2006) All possible
modes of gene action are observed in a global comparison of gene expression in a maize F-1
hybrid and its inbred parents. Proc Natl Acad Sci USA 103:6805–6810
Tabor HK, Risch NJ, Myers RM (2002) Candidate gene approaches for studying complex genetic
traits: practical considerations. Nat Rev Genet 3:391–397
Tanguy A, Bierne N, Saavedra C, Pina B, Bachère E, Kube M, Bazin E, Bonhomme F, Boudry
P, Boulo V, Boutet I, Cancela L, Dossat C, Favrel P, Huvet A, Jarque S, Jollivet D, Klages S,
Lapegue S, Leite R, Moal J, Moraga D, Reinhardt R, Samain J-F, Zouros E, Canario A (2008)
Increasing genomic information in bivalves through new EST collections in four species:
Development of new genetic markers for environmental studies and genome evolution. Gene
408:27–36
Tao WJ, Boulding EG (2003) Associations between single nucleotide polymorphisms in candidate
genes and growth rate in Arctic charr (Salvelinus alpinus L. Heredity 91:60–69