Marine Metagenome and Supporting Technology References 507
Part C | 19
of heavy metals, Trends Biotechnol. 19(2), 67–73
(2001)
19.36 S. Sauge-Merle, C. Lecomte-Pradines, P. Carrier,
S. Cuine, M. Dubow: Heavy metal accumulation by
recombinant mammalian metallothionein within
Escherichia coli protects against elevated metal exposure, Chemosphere 88(8), 918–924 (2012)
19.37 L. Fieseler, M. Horn, M. Wagner, U. Hentschel: Discovery of the novel candidate phylum Poribacteria
in marine sponges, Appl. Environ. Microbiol. 70(6),
3724–3732 (2004)
19.38 P. Das, S. Mukherjee, R. Sen: Antimicrobial potential of a lipopeptide biosurfactant derived from a
marine Bacillus circulans, J. Appl. Microbiol. 104(6),
1675–1684 (2008)
19.39 R. Waditee-Sirisattha, D. Sittipol, Y. Tanaka, T. Takabe: Overexpression of serine hydroxymethyltransferase from halotolerant cyanobacterium in Escherichia coli results in increased accumulation of
choline precursors and enhanced salinity tolerance, FEMS Microbiol. Lett. 333(1), 46–53 (2012)
19.40 Z. Mai, J. Yang, X. Tian, J. Li, S. Zhang: Gene cloning
and characterization of a novel salt-tolerant and
glucose-enhanced beta-glucosidase from a marine streptomycete, Appl. Biochem. Biotechnol.
169(5), 1512–1522 (2013)
19.41 R.K. Kapardar, R. Ranjan, A. Grover, M. Puri,
R. Sharma: Identification and characterization of
genes conferring salt tolerance to Escherichia coli
from pond water metagenome, Bioresour. Technol.
101(11), 3917–3924 (2010)
19.42 J.H. Jeon, H.S. Lee, J.T. Kim, S.J. Kim, S.H. Choi,
S.G. Kang, J.H. Lee: Identification of a new subfamily of salt-tolerant esterases from a metagenomic library of tidal flat sediment, Appl. Microbiol. Biotechnol. 93(2), 623–631 (2012)
19.43 K. Westphal, S. Langklotz, N. Thomanek, F. Narberhaus: A trapping approach reveals novel substrates
and physiological functions of the essential protease FtsH in Escherichia coli, J. Biol. Chem. 287(51),
42962–42971 (2012)
19.44 T. Tomoyasu, J. Gamer, B. Bukau, M. Kanemori,
H. Mori, A.J. Rutman, A.B. Oppenheim, T. Yura,
K. Yamanaka, H. Niki, S. Hiraga, T. Ogura: Escherichia Coli FtsH is a membrane-bound, ATPDependent protease which degrades the heatshock transcription Factor Sigma(32), Embo. J.
14(11), 2551–2560 (1995)
19.45 K. Gao, K.R. Mckinley: Use of macroalgae for marine
biomass production and CO 2 remediation – a review, J. Appl. Phycol. 6(1), 45–60 (1994)
19.46 J. Vera, J. Castro, A. Gonzalez, A. Moenne: Seaweed polysaccharides and derived oligosaccharides stimulate defense responses and protection
against pathogens in plants, Mar. Drugs 9(12), 2514–
2525 (2011)
19.47 D. Choi, H.S. Sim, Y.L. Piao, W. Ying, H. Cho: Sugar
production from raw seaweed using the enzyme
method, J. Ind. Eng. Chem. 15(1), 12–15 (2009)
19.48 J.H. Hehemann, G. Correc, T. Barbeyron, W. Helbert,
M. Czjzek, G. Michel: Transfer of carbohydrateactive enzymes from marine bacteria to Japanese
gut microbiota, Nature 464(7290), 908–912
(2010)
19.49 P. Nyvall Collen, J.F. Sassi, H. Rogniaux, H. Marfaing, W. Helbert: Ulvan lyases isolated from the
Flavobacteria Persicivirga ulvanivorans are the first
members of a new polysaccharide lyase family,
J. Biolo. Chem. 286(49), 42063–42071 (2011)
19.50 S. Gomare, H.A. Kim, H.H. Jeong, M.W. Lee,
J.M. Park: Isolation of the polysaccharidaseproducing bacteria from the gut of sea snail, Batillus cornutus, Korean J. Chem. Eng. 28(5), 1252–1259
(2011)
19.51 Y.J. Eun, A.S. Utada, M.F. Copeland, S. Takeuchi,
D.B. Weibel: Encapsulating bacteria in agarose
microparticles using microfluidics for highthroughput cell analysis and isolation, ACS Chem.
Biol. 6(3), 260–266 (2011)
19.52 G.M. Whitesides: The origins and the future of microfluidics, Nature 442(7101), 368–373 (2006)
19.53 D.J. Beebe, G.A. Mensing, G.M. Walker: Physics and
applications of microfluidics in biology, Annu. Rev.
Biomed. Eng. 4, 261–286 (2002)
19.54 D. Figeys, D. Pinto: Lab-on-a-chip: a revolution in
biological and medical sciences, Anal. Chem. 72(9),
330A–335A (2000)
19.55 S.Y. Teh, R. Lin, L.H. Hung, A.P. Lee: Droplet microfluidics, Lab Chip 8(2), 198–220 (2008)
19.56 J. West, M. Becker, S. Tombrink, A. Manz: Micro total
analysis systems: latest achievements, Anal. Chem.
80(12), 4403–4419 (2008)
19.57 R. Seemann, M. Brinkmann, T. Pfohl, S. Herminghaus: Droplet based microfluidics, Rep. Prog. Phys.
75(1), 016601 (2012)
19.58 E. Brouzes, M. Medkova, N. Savenelli, D. Marran, M. Twardowski, J.B. Hutchison, J.M. Rothberg, D.R. Link, N. Perrimon, M.L. Samuels:
Droplet microfluidic technology for single-cell
high-throughput screening, Proc. Natl. Acad. Sci.
USA 106(34), 14195–14200 (2009)
19.59 K. Zengler, G. Toledo, M. Rappe, J. Elkins,
E.J. Mathur, J.M. Short, M. Keller: Cultivating the
uncultured, Proc. Natl. Acad. Sci. USA 99(24), 15681–
15686 (2002)
19.60 A. Aharoni, G. Amitai, K. Bernath, S. Magdassi, D.S. Tawfik: High-throughput screening
of enzyme libraries: thiolactonases evolved by
fluorescence-activated sorting of single cells in
emulsion compartments, Chem. Biol. 12(12), 1281–
1289 (2005)
19.61 K. Leung, H. Zahn, T. Leaver, K.M. Konwar,
N.W. Hanson, A.P. Page, C.C. Lo, P.S. Chain, S.J. Hallam, C.L. Hansen: A programmable droplet-based
microfluidic device applied to multiparameter
analysis of single microbes and microbial communities, Proc. Natl. Acad. Sci. USA 109(20), 7665–7670
(2012)
Part C | 19
of heavy metals, Trends Biotechnol. 19(2), 67–73
(2001)
19.36 S. Sauge-Merle, C. Lecomte-Pradines, P. Carrier,
S. Cuine, M. Dubow: Heavy metal accumulation by
recombinant mammalian metallothionein within
Escherichia coli protects against elevated metal exposure, Chemosphere 88(8), 918–924 (2012)
19.37 L. Fieseler, M. Horn, M. Wagner, U. Hentschel: Discovery of the novel candidate phylum Poribacteria
in marine sponges, Appl. Environ. Microbiol. 70(6),
3724–3732 (2004)
19.38 P. Das, S. Mukherjee, R. Sen: Antimicrobial potential of a lipopeptide biosurfactant derived from a
marine Bacillus circulans, J. Appl. Microbiol. 104(6),
1675–1684 (2008)
19.39 R. Waditee-Sirisattha, D. Sittipol, Y. Tanaka, T. Takabe: Overexpression of serine hydroxymethyltransferase from halotolerant cyanobacterium in Escherichia coli results in increased accumulation of
choline precursors and enhanced salinity tolerance, FEMS Microbiol. Lett. 333(1), 46–53 (2012)
19.40 Z. Mai, J. Yang, X. Tian, J. Li, S. Zhang: Gene cloning
and characterization of a novel salt-tolerant and
glucose-enhanced beta-glucosidase from a marine streptomycete, Appl. Biochem. Biotechnol.
169(5), 1512–1522 (2013)
19.41 R.K. Kapardar, R. Ranjan, A. Grover, M. Puri,
R. Sharma: Identification and characterization of
genes conferring salt tolerance to Escherichia coli
from pond water metagenome, Bioresour. Technol.
101(11), 3917–3924 (2010)
19.42 J.H. Jeon, H.S. Lee, J.T. Kim, S.J. Kim, S.H. Choi,
S.G. Kang, J.H. Lee: Identification of a new subfamily of salt-tolerant esterases from a metagenomic library of tidal flat sediment, Appl. Microbiol. Biotechnol. 93(2), 623–631 (2012)
19.43 K. Westphal, S. Langklotz, N. Thomanek, F. Narberhaus: A trapping approach reveals novel substrates
and physiological functions of the essential protease FtsH in Escherichia coli, J. Biol. Chem. 287(51),
42962–42971 (2012)
19.44 T. Tomoyasu, J. Gamer, B. Bukau, M. Kanemori,
H. Mori, A.J. Rutman, A.B. Oppenheim, T. Yura,
K. Yamanaka, H. Niki, S. Hiraga, T. Ogura: Escherichia Coli FtsH is a membrane-bound, ATPDependent protease which degrades the heatshock transcription Factor Sigma(32), Embo. J.
14(11), 2551–2560 (1995)
19.45 K. Gao, K.R. Mckinley: Use of macroalgae for marine
biomass production and CO 2 remediation – a review, J. Appl. Phycol. 6(1), 45–60 (1994)
19.46 J. Vera, J. Castro, A. Gonzalez, A. Moenne: Seaweed polysaccharides and derived oligosaccharides stimulate defense responses and protection
against pathogens in plants, Mar. Drugs 9(12), 2514–
2525 (2011)
19.47 D. Choi, H.S. Sim, Y.L. Piao, W. Ying, H. Cho: Sugar
production from raw seaweed using the enzyme
method, J. Ind. Eng. Chem. 15(1), 12–15 (2009)
19.48 J.H. Hehemann, G. Correc, T. Barbeyron, W. Helbert,
M. Czjzek, G. Michel: Transfer of carbohydrateactive enzymes from marine bacteria to Japanese
gut microbiota, Nature 464(7290), 908–912
(2010)
19.49 P. Nyvall Collen, J.F. Sassi, H. Rogniaux, H. Marfaing, W. Helbert: Ulvan lyases isolated from the
Flavobacteria Persicivirga ulvanivorans are the first
members of a new polysaccharide lyase family,
J. Biolo. Chem. 286(49), 42063–42071 (2011)
19.50 S. Gomare, H.A. Kim, H.H. Jeong, M.W. Lee,
J.M. Park: Isolation of the polysaccharidaseproducing bacteria from the gut of sea snail, Batillus cornutus, Korean J. Chem. Eng. 28(5), 1252–1259
(2011)
19.51 Y.J. Eun, A.S. Utada, M.F. Copeland, S. Takeuchi,
D.B. Weibel: Encapsulating bacteria in agarose
microparticles using microfluidics for highthroughput cell analysis and isolation, ACS Chem.
Biol. 6(3), 260–266 (2011)
19.52 G.M. Whitesides: The origins and the future of microfluidics, Nature 442(7101), 368–373 (2006)
19.53 D.J. Beebe, G.A. Mensing, G.M. Walker: Physics and
applications of microfluidics in biology, Annu. Rev.
Biomed. Eng. 4, 261–286 (2002)
19.54 D. Figeys, D. Pinto: Lab-on-a-chip: a revolution in
biological and medical sciences, Anal. Chem. 72(9),
330A–335A (2000)
19.55 S.Y. Teh, R. Lin, L.H. Hung, A.P. Lee: Droplet microfluidics, Lab Chip 8(2), 198–220 (2008)
19.56 J. West, M. Becker, S. Tombrink, A. Manz: Micro total
analysis systems: latest achievements, Anal. Chem.
80(12), 4403–4419 (2008)
19.57 R. Seemann, M. Brinkmann, T. Pfohl, S. Herminghaus: Droplet based microfluidics, Rep. Prog. Phys.
75(1), 016601 (2012)
19.58 E. Brouzes, M. Medkova, N. Savenelli, D. Marran, M. Twardowski, J.B. Hutchison, J.M. Rothberg, D.R. Link, N. Perrimon, M.L. Samuels:
Droplet microfluidic technology for single-cell
high-throughput screening, Proc. Natl. Acad. Sci.
USA 106(34), 14195–14200 (2009)
19.59 K. Zengler, G. Toledo, M. Rappe, J. Elkins,
E.J. Mathur, J.M. Short, M. Keller: Cultivating the
uncultured, Proc. Natl. Acad. Sci. USA 99(24), 15681–
15686 (2002)
19.60 A. Aharoni, G. Amitai, K. Bernath, S. Magdassi, D.S. Tawfik: High-throughput screening
of enzyme libraries: thiolactonases evolved by
fluorescence-activated sorting of single cells in
emulsion compartments, Chem. Biol. 12(12), 1281–
1289 (2005)
19.61 K. Leung, H. Zahn, T. Leaver, K.M. Konwar,
N.W. Hanson, A.P. Page, C.C. Lo, P.S. Chain, S.J. Hallam, C.L. Hansen: A programmable droplet-based
microfluidic device applied to multiparameter
analysis of single microbes and microbial communities, Proc. Natl. Acad. Sci. USA 109(20), 7665–7670
(2012)