Part C | 19
508 Part C Marine Genomics
19.62 M.B. Elowitz, A.J. Levine, E.D. Siggia, P.S. Swain:
Stochastic gene expression in a single cell, Science
297(5584), 1183–1186 (2002)
19.63 F.S. Fritzsch, C. Dusny, O. Frick, A. Schmid: Singlecell analysis in biotechnology, systems biology, and
biocatalysis, Annu. Rev. Chem, Biomol. Eng. 3, 129–
155 (2012)
19.64 D. Wang, S. Bodovitz: Single cell analysis: the new
frontier in omics, Trends Biotechnol. 28(6), 281–290
(2010)
19.65 R.H. Templer, O. Ces: New frontiers in single-cell
analysis, J. R. Soc. Interface 5(Suppl2), S111–112
(2008)
19.66 M. Hosokawa, A. Arakaki, M. Takahashi, T. Mori,
H. Takeyama, T. Matsunaga: High-density microcavity array for cell detection: single-cell analysis
of hematopoietic stem cells in peripheral blood
mononuclear cells, Anal. Chem. 81(13), 5308–5313
(2009)
19.67 T. Matsunaga, M. Hosokawa, A. Arakaki,
T. Taguchi, T. Mori, T. Tanaka, H. Takeyama:
High-efficiency single-cell entrapment and fluorescence in situ hybridization analysis using
a poly(dimethylsiloxane) microfluidic device integrated with a black poly(ethylene terephthalate)
micromesh, Anal. Chem. 80(13), 5139–5145 (2008)
19.68 K.C. Schuster, E. Urlaub, J.R. Gapes: Singlecell analysis of bacteria by Raman microscopy:
spectral information on the chemical composition of cells and on the heterogeneity in
a culture, J. Microbiol. Methods 42(1), 29–38
(2000)
19.69 G. Nebe-von-Caron, P.J. Stephens, C.J. Hewitt,
J.R. Powell, R.A. Badley: Analysis of bacterial function by multi-colour fluorescence flow cytometry
and single cell sorting, J. Microbiol. Methods 42(1),
97–114 (2000)
19.70 E.A. Ottesen, J.W. Hong, S.R. Quake, J.R. Leadbetter:
Microfluidic digital PCR enables multigene analysis of individual environmental bacteria, Science
314(5804), 1464–1467 (2006)
19.71 T.R. Thomas, D.P. Kavlekar, P.A. LokaBharathi: Marine drugs from sponge-microbe association –
a review, Mar. Drugs 8(4), 1417–1468 (2010)
19.72 J.W. Blunt, B.R. Copp, W.P. Hu, M.H. Munro,
P.T. Northcote, M.R. Prinsep: Marine natural products, Nat. Prod. Rep. 26(2), 170–244 (2009)
19.73 J. Piel, D. Hui, G. Wen, D. Butzke, M. Platzer,
N. Fusetani, S. Matsunaga: Antitumor polyketide
biosynthesis by an uncultivated bacterial symbiont
of the marine sponge Theonella swinhoei, Proc.
Natl. Acad. Sci. USA 101(46), 16222–16227 (2004)
19.74 E.R. Mardis: Next-generation DNA sequencing
methods, Annu. Rev. Genomics, Hum. Genet. 9,
387–402 (2008)
19.75 T.C. Glenn: Field guide to next-generation DNA sequencers, Mol. Ecol. Resour. 11(5), 759–769 (2011)
19.76 S. Bao, R. Jiang, W. Kwan, B. Wang, X. Ma, Y.Q. Song:
Evaluation of next-generation sequencing software in mapping and assembly, J. Hum. Genet.
56(6), 406–414 (2011)
19.77 D.H. Huson, A.F. Auch, J. Qi, S.C. Schuster: MEGAN
analysis of metagenomic data, Genome Res. 17(3),
377–386 (2007)
19.78 E. M. Glass, J. Wilkening, A. Wilke, D. Antonopoulos,
F. Meyer: Using the metagenomics RAST server (MGRAST) for analyzing shotgun metagenomes, Cold
Spring Harb. Protoc. 2010(1), pdb prot5368 (2010)
19.79 I. Pagani, K. Liolios, J. Jansson, I.M. Chen,
T. Smirnova, B. Nosrat, V.M. Markowitz, N.C. Kyrpides: The Genomes OnLine Database (GOLD) v.4:
status of genomic and metagenomic projects and
their associated metadata, Nucleic Acids Res.
40(Database issue), D571–579 (2012)
508 Part C Marine Genomics
19.62 M.B. Elowitz, A.J. Levine, E.D. Siggia, P.S. Swain:
Stochastic gene expression in a single cell, Science
297(5584), 1183–1186 (2002)
19.63 F.S. Fritzsch, C. Dusny, O. Frick, A. Schmid: Singlecell analysis in biotechnology, systems biology, and
biocatalysis, Annu. Rev. Chem, Biomol. Eng. 3, 129–
155 (2012)
19.64 D. Wang, S. Bodovitz: Single cell analysis: the new
frontier in omics, Trends Biotechnol. 28(6), 281–290
(2010)
19.65 R.H. Templer, O. Ces: New frontiers in single-cell
analysis, J. R. Soc. Interface 5(Suppl2), S111–112
(2008)
19.66 M. Hosokawa, A. Arakaki, M. Takahashi, T. Mori,
H. Takeyama, T. Matsunaga: High-density microcavity array for cell detection: single-cell analysis
of hematopoietic stem cells in peripheral blood
mononuclear cells, Anal. Chem. 81(13), 5308–5313
(2009)
19.67 T. Matsunaga, M. Hosokawa, A. Arakaki,
T. Taguchi, T. Mori, T. Tanaka, H. Takeyama:
High-efficiency single-cell entrapment and fluorescence in situ hybridization analysis using
a poly(dimethylsiloxane) microfluidic device integrated with a black poly(ethylene terephthalate)
micromesh, Anal. Chem. 80(13), 5139–5145 (2008)
19.68 K.C. Schuster, E. Urlaub, J.R. Gapes: Singlecell analysis of bacteria by Raman microscopy:
spectral information on the chemical composition of cells and on the heterogeneity in
a culture, J. Microbiol. Methods 42(1), 29–38
(2000)
19.69 G. Nebe-von-Caron, P.J. Stephens, C.J. Hewitt,
J.R. Powell, R.A. Badley: Analysis of bacterial function by multi-colour fluorescence flow cytometry
and single cell sorting, J. Microbiol. Methods 42(1),
97–114 (2000)
19.70 E.A. Ottesen, J.W. Hong, S.R. Quake, J.R. Leadbetter:
Microfluidic digital PCR enables multigene analysis of individual environmental bacteria, Science
314(5804), 1464–1467 (2006)
19.71 T.R. Thomas, D.P. Kavlekar, P.A. LokaBharathi: Marine drugs from sponge-microbe association –
a review, Mar. Drugs 8(4), 1417–1468 (2010)
19.72 J.W. Blunt, B.R. Copp, W.P. Hu, M.H. Munro,
P.T. Northcote, M.R. Prinsep: Marine natural products, Nat. Prod. Rep. 26(2), 170–244 (2009)
19.73 J. Piel, D. Hui, G. Wen, D. Butzke, M. Platzer,
N. Fusetani, S. Matsunaga: Antitumor polyketide
biosynthesis by an uncultivated bacterial symbiont
of the marine sponge Theonella swinhoei, Proc.
Natl. Acad. Sci. USA 101(46), 16222–16227 (2004)
19.74 E.R. Mardis: Next-generation DNA sequencing
methods, Annu. Rev. Genomics, Hum. Genet. 9,
387–402 (2008)
19.75 T.C. Glenn: Field guide to next-generation DNA sequencers, Mol. Ecol. Resour. 11(5), 759–769 (2011)
19.76 S. Bao, R. Jiang, W. Kwan, B. Wang, X. Ma, Y.Q. Song:
Evaluation of next-generation sequencing software in mapping and assembly, J. Hum. Genet.
56(6), 406–414 (2011)
19.77 D.H. Huson, A.F. Auch, J. Qi, S.C. Schuster: MEGAN
analysis of metagenomic data, Genome Res. 17(3),
377–386 (2007)
19.78 E. M. Glass, J. Wilkening, A. Wilke, D. Antonopoulos,
F. Meyer: Using the metagenomics RAST server (MGRAST) for analyzing shotgun metagenomes, Cold
Spring Harb. Protoc. 2010(1), pdb prot5368 (2010)
19.79 I. Pagani, K. Liolios, J. Jansson, I.M. Chen,
T. Smirnova, B. Nosrat, V.M. Markowitz, N.C. Kyrpides: The Genomes OnLine Database (GOLD) v.4:
status of genomic and metagenomic projects and
their associated metadata, Nucleic Acids Res.
40(Database issue), D571–579 (2012)