Part C | 19
506 Part C Marine Genomics
19.9
P.G. Williams: Panning for chemical gold: marine
bacteria as a source of new therapeutics, Trends
Biotechnol. 27(1), 45–52 (2009)
19.10 J. Handelsman: Metagenomics: application of genomics to uncultured microorganisms, Microbiol.
Mol. Biol. Rev. 68(4), 669–685 (2004)
19.11 C.S. Riesenfeld, P.D. Schloss, J. Handelsman:
Metagenomics: genomic analysis of microbial communities, Annu. Rev. Genet. 38, 525–552 (2004)
19.12 W.R. Streit, R.A. Schmitz: Metagenomics – the key
to the uncultured microbes, Curr. Opin. Microbiol.
7(5), 492–498 (2004)
19.13 T.M. Schmidt, E.F. DeLong, N.R. Pace: Analysis of a
marine picoplankton community by 16S rRNA gene
cloning and sequencing, J. Bacteriol. 173(14), 4371–
4378 (1991)
19.14 J.L. Stein, T.L. Marsh, K.Y. Wu, H. Shizuya, E.F. DeLong: Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair
genome fragment from a planktonic marine archaeon, J. Bacteriol. 178(3), 591–599 (1996)
19.15 J.C. Venter, K. Remington, J.F. Heidelberg,
A.L. Halpern, D. Rusch, J.A. Eisen, D. Wu,
I. Paulsen, K.E. Nelson, W. Nelson, D.E. Fouts,
S. Levy, A.H. Knap, M.W. Lomas, K. Nealson,
O. White, J. Peterson, J. Hoffman, R. Parsons,
H. Baden-Tillson, C. Pfannkoch, Y.H. Rogers,
H.O. Smith: Environmental genome shotgun sequencing of the Sargasso Sea, Science 304(5667),
66–74 (2004)
19.16 A.I. Culley, A.S. Lang, C.A. Suttle: Metagenomic
analysis of coastal RNA virus communities, Science
312(5781), 1795–1798 (2006)
19.17 A.B. Martin-Cuadrado, F. Rodriguez-Valera, D. Moreira, J.C. Alba, E. Ivars-Martinez, M.R. Henn,
E. Talla, P. Lopez-Garcia: Hindsight in the relative
abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic
plankton of different oceanic regions, ISME J. 2(8),
865–886 (2008)
19.18 B. Li, D. Sher, L. Kelly, Y. Shi, K. Huang, P.J. Knerr, I. Joewono, D. Rusch, S.W. Chisholm, W.A. van
der Donk: Catalytic promiscuity in the biosynthesis
of cyclic peptide secondary metabolites in planktonic marine cyanobacteria, Proc. Natl. Acad. Sci.
USA 107(23), 10430–10435 (2010)
19.19 T. Panda, B.S. Gowrishankar: Production and applications of esterases, Appl. Microbiol. Biotechnol.
67(2), 160–169 (2005)
19.20 Y. Okamura, T. Kimura, H. Yokouchi, M. MenesesOsorio, M. Katoh, T. Matsunaga, H. Takeyama: Isolation and characterization of a GDSL esterase from
the metagenome of a marine sponge-associated
bacteria, Mar. Biotechnol. (NY) 12(4), 395–402 (2010)
19.21 A. Copeland, S. Lucas, A. Lapidus, K. Barry, J.C. Detter, T. Glavina del Rio, N. Hammon, S. Israni, E.
Dalin, H. Tice, S. Pitluck, H. Kiss, T. Brettin, D. Bruce,
C. Han, R. Tapia, P. Gilna, J. Schmutz, F. Larimer, M.
Land, L. Hauser, N. Kyrpides, E. Kim, K. Edwards,
P. Richardson: Complete sequence of chromosome
1 of Marinobacter aquaeolei VT8, Submitted (DEC2006) to the EMBL/GenBank/DDBJ databases.
19.22 C.C. Akoh, G.C. Lee, Y.C. Liaw, T.H. Huang, J.F. Shaw:
GDSL family of serine esterases/lipases, Prog. Lipid
Res. 43(6), 534–552 (2004)
19.23 C. Upton, J.T. Buckley: A new family of lipolytic enzymes?, Trends Biochem. Sci. 20(5), 178–179
(1995)
19.24 B.P. Dalrymple, D.H. Cybinski, I. Layton, C.S. McSweeney, G.P. Xue, Y.J. Swadling, J.B. Lowry: Three
Neocallimastix patriciarum esterases associated
with the degradation of complex polysaccharides
are members of a new family of hydrolases, Microbiology 143(Pt8), 2605–2614 (1997)
19.25 J. Li, U. Derewenda, Z. Dauter, S. Smith,
Z.S. Derewenda: Crystal structure of the Escherichia coli thioesterase ˜ II, a homolog of the
human Nef binding enzyme, Nat. Struct. Biol. 7(7),
555–559 (2000)
19.26 A. Molgaard, S. Kauppinen, S. Larsen: Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases,
Structure 8(4), 373–383 (2000)
19.27 Y.C. Lo, S.C. Lin, J.F. Shaw, Y.C. Liaw: Crystal structure of Escherichia coli thioesterase I/protease I/
lysophospholipase L1: consensus sequence blocks
constitute the catalytic center of SGNH-hydrolases
through a conserved hydrogen bond network,
J. Mol. Biol. 330(3), 539–551 (2003)
19.28 H. Cho, J.E. Cronan Jr.: Escherichia coli thioesterase
I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme, J. Biol. Chem. 268(13), 9238–9245 (1993)
19.29 K. Morimoto, E. Furuta, H. Hashimoto, K. Inouye:
Effects of high concentration of salts on the esterase activity and structure of a kiwifruit peptidase, actinidain, J. Biochem. 139(6), 1065–1071
(2006)
19.30 R. Singh, N. Gautam, A. Mishra, R. Gupta: Heavy
metals and living systems: An overview, Indian
J. Pharmacol. 43(3), 246–253 (2011)
19.31 J. Wang, C. Chen: Biosorption of heavy metals
by Saccharomyces cerevisiae: a review, Biotechnol.
Adv. 24(5), 427–451 (2006)
19.32 E.V. Soares, H.M. Soares: Bioremediation of industrial effluents containing heavy metals using brewing cells of Saccharomyces cerevisiae as a green
technology: a review, Environ. Sci. Pollut. Res. Int.
19(4), 1066–1083 (2012)
19.33 B. Volesky: Detoxification of metal-bearing effluents: biosorption for the next century, Hydrometallurgy 59(2), 203–216 (2001)
19.34 J. Wang, C. Chen: Biosorbents for heavy metals
removal and their future, Biotechnol. Adv. 27(2),
195–226 (2009)
19.35 M. Mejare, L. Bulow: Metal-binding proteins and
peptides in bioremediation and phytoremediation
506 Part C Marine Genomics
19.9
P.G. Williams: Panning for chemical gold: marine
bacteria as a source of new therapeutics, Trends
Biotechnol. 27(1), 45–52 (2009)
19.10 J. Handelsman: Metagenomics: application of genomics to uncultured microorganisms, Microbiol.
Mol. Biol. Rev. 68(4), 669–685 (2004)
19.11 C.S. Riesenfeld, P.D. Schloss, J. Handelsman:
Metagenomics: genomic analysis of microbial communities, Annu. Rev. Genet. 38, 525–552 (2004)
19.12 W.R. Streit, R.A. Schmitz: Metagenomics – the key
to the uncultured microbes, Curr. Opin. Microbiol.
7(5), 492–498 (2004)
19.13 T.M. Schmidt, E.F. DeLong, N.R. Pace: Analysis of a
marine picoplankton community by 16S rRNA gene
cloning and sequencing, J. Bacteriol. 173(14), 4371–
4378 (1991)
19.14 J.L. Stein, T.L. Marsh, K.Y. Wu, H. Shizuya, E.F. DeLong: Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair
genome fragment from a planktonic marine archaeon, J. Bacteriol. 178(3), 591–599 (1996)
19.15 J.C. Venter, K. Remington, J.F. Heidelberg,
A.L. Halpern, D. Rusch, J.A. Eisen, D. Wu,
I. Paulsen, K.E. Nelson, W. Nelson, D.E. Fouts,
S. Levy, A.H. Knap, M.W. Lomas, K. Nealson,
O. White, J. Peterson, J. Hoffman, R. Parsons,
H. Baden-Tillson, C. Pfannkoch, Y.H. Rogers,
H.O. Smith: Environmental genome shotgun sequencing of the Sargasso Sea, Science 304(5667),
66–74 (2004)
19.16 A.I. Culley, A.S. Lang, C.A. Suttle: Metagenomic
analysis of coastal RNA virus communities, Science
312(5781), 1795–1798 (2006)
19.17 A.B. Martin-Cuadrado, F. Rodriguez-Valera, D. Moreira, J.C. Alba, E. Ivars-Martinez, M.R. Henn,
E. Talla, P. Lopez-Garcia: Hindsight in the relative
abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic
plankton of different oceanic regions, ISME J. 2(8),
865–886 (2008)
19.18 B. Li, D. Sher, L. Kelly, Y. Shi, K. Huang, P.J. Knerr, I. Joewono, D. Rusch, S.W. Chisholm, W.A. van
der Donk: Catalytic promiscuity in the biosynthesis
of cyclic peptide secondary metabolites in planktonic marine cyanobacteria, Proc. Natl. Acad. Sci.
USA 107(23), 10430–10435 (2010)
19.19 T. Panda, B.S. Gowrishankar: Production and applications of esterases, Appl. Microbiol. Biotechnol.
67(2), 160–169 (2005)
19.20 Y. Okamura, T. Kimura, H. Yokouchi, M. MenesesOsorio, M. Katoh, T. Matsunaga, H. Takeyama: Isolation and characterization of a GDSL esterase from
the metagenome of a marine sponge-associated
bacteria, Mar. Biotechnol. (NY) 12(4), 395–402 (2010)
19.21 A. Copeland, S. Lucas, A. Lapidus, K. Barry, J.C. Detter, T. Glavina del Rio, N. Hammon, S. Israni, E.
Dalin, H. Tice, S. Pitluck, H. Kiss, T. Brettin, D. Bruce,
C. Han, R. Tapia, P. Gilna, J. Schmutz, F. Larimer, M.
Land, L. Hauser, N. Kyrpides, E. Kim, K. Edwards,
P. Richardson: Complete sequence of chromosome
1 of Marinobacter aquaeolei VT8, Submitted (DEC2006) to the EMBL/GenBank/DDBJ databases.
19.22 C.C. Akoh, G.C. Lee, Y.C. Liaw, T.H. Huang, J.F. Shaw:
GDSL family of serine esterases/lipases, Prog. Lipid
Res. 43(6), 534–552 (2004)
19.23 C. Upton, J.T. Buckley: A new family of lipolytic enzymes?, Trends Biochem. Sci. 20(5), 178–179
(1995)
19.24 B.P. Dalrymple, D.H. Cybinski, I. Layton, C.S. McSweeney, G.P. Xue, Y.J. Swadling, J.B. Lowry: Three
Neocallimastix patriciarum esterases associated
with the degradation of complex polysaccharides
are members of a new family of hydrolases, Microbiology 143(Pt8), 2605–2614 (1997)
19.25 J. Li, U. Derewenda, Z. Dauter, S. Smith,
Z.S. Derewenda: Crystal structure of the Escherichia coli thioesterase ˜ II, a homolog of the
human Nef binding enzyme, Nat. Struct. Biol. 7(7),
555–559 (2000)
19.26 A. Molgaard, S. Kauppinen, S. Larsen: Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases,
Structure 8(4), 373–383 (2000)
19.27 Y.C. Lo, S.C. Lin, J.F. Shaw, Y.C. Liaw: Crystal structure of Escherichia coli thioesterase I/protease I/
lysophospholipase L1: consensus sequence blocks
constitute the catalytic center of SGNH-hydrolases
through a conserved hydrogen bond network,
J. Mol. Biol. 330(3), 539–551 (2003)
19.28 H. Cho, J.E. Cronan Jr.: Escherichia coli thioesterase
I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme, J. Biol. Chem. 268(13), 9238–9245 (1993)
19.29 K. Morimoto, E. Furuta, H. Hashimoto, K. Inouye:
Effects of high concentration of salts on the esterase activity and structure of a kiwifruit peptidase, actinidain, J. Biochem. 139(6), 1065–1071
(2006)
19.30 R. Singh, N. Gautam, A. Mishra, R. Gupta: Heavy
metals and living systems: An overview, Indian
J. Pharmacol. 43(3), 246–253 (2011)
19.31 J. Wang, C. Chen: Biosorption of heavy metals
by Saccharomyces cerevisiae: a review, Biotechnol.
Adv. 24(5), 427–451 (2006)
19.32 E.V. Soares, H.M. Soares: Bioremediation of industrial effluents containing heavy metals using brewing cells of Saccharomyces cerevisiae as a green
technology: a review, Environ. Sci. Pollut. Res. Int.
19(4), 1066–1083 (2012)
19.33 B. Volesky: Detoxification of metal-bearing effluents: biosorption for the next century, Hydrometallurgy 59(2), 203–216 (2001)
19.34 J. Wang, C. Chen: Biosorbents for heavy metals
removal and their future, Biotechnol. Adv. 27(2),
195–226 (2009)
19.35 M. Mejare, L. Bulow: Metal-binding proteins and
peptides in bioremediation and phytoremediation