237
burn, T.H., Sørensen, J. (eds.) Nitrogen Cycling in
Coastal Marine Environments. SCOPE Reports, 207249, John Wiley and Sons, Chichester.
Hensen, C., Landenberger, H., Zabel, M., Gundersen, J.K.,
Glud, R.N. and Schulz, H.D., 1997. Simulation of
early diagenetic processes in continental slope
sediments off Southwest Africa: The Computer Model
CoTAM tested. Mar. Geol., 144, 191-210.
Hensen, C., Landenberger, H., Zabel, M. and Schulz,
H.D., 1998. Quantification of diffusive benthic fluxes
of nitrate, phosphate and silicate in the Southern
Atlantic Ocean. Glob. Biogeochem. Cycles, 12, 193210.
Hensen, C., Zabel, M. and Schulz, H.D., 2000. A comparison of benthic nutrient fluxes from deep-sea sediments off Namibia and Argentina. Deep-Sea Res. II,
47, 2029-2050.
Hynes, R.K. and Knowles, R., 1978. Inhibition by acetylene of ammonia oxidation in Nitrosomonas europaea. FEMS Microbiol. Lett., 4, 319-321.
Ingall, E.D. and Van Cappellen, P., 1990. Relation
between sedimentation rate and burial of organic
phosphorus and organic carbon in marine sediments.
Geochim. Cosmochim. Acta, 54, 373-386.
Jahnke, R.A. and Christiansen, M.B., 1989. A freevehicle benthic chamber instrument for sea floor
studies.- Deep-Sea Res., 36, 625-637.
Jahnke, R.A., Heggie, D., Emerson, S. and Grundmanis,
V., 1982. Pore waters of the central Pacific Ocean:
nutrient results.- Earth Planet. Sci. Letters, 61, 233256.
Jahnke, R.A., Reimers, C.E. and Craven, D.B., 1990.
Intensification of recycling of organic matter at the
sea floor near ocean margins.- Nature, 348, 50-54.
Jahnke, R.A., Craven, D.B., McCorkle, D.C. and Reimers,
C.E., 1997. CaCO 3 dissolution in California continental margin sediments: The influence of organic
matter remineralization. Geochim. Cosmochim. Acta,
61(17), 3587-3604.
Jarvis, I., Burnett, W.C., Nathan., Y., Almbaydin, F.,
Attia, K.M., Castro, L.N., Flicoteaux, R., Hilmy,
M.E., Husain, V., Qutawna, A.A., Serjani, A. and
Zanin, Y.N., 1994. Phosphorite geochemistry: stateof-the-art and environmental concerns. In: Föllmi,
K.B. (ed) Concepts and Controversies in Phosphogenesis. Eclogae Geol. Helv., 87, 643-700.
Johnson, K.S., Berelson, W.M., Coale, K.H., Coley, T.L.,
Elrod, V.A., Fairey, W.R., Iams, H.D., Kilgore, T.E.
and Nowicki, J.L., 1992. Manganese flux from
continental margin sediments in a transect through
the oxygen minimum. Science, 257, 1242-1245.
Jørgensen, B.B., 1977. Bacterial sulfate reduction within
reduced microniches of oxidized marine sediments.
Mar. Biol., 41, 7-17.
Jørgensen, B.B. and Sørensen, J., 1985. Seasonal cycles of
O 2 , NO 3
- , and SO 4
2- reduction in estuarine sediments:
The significance of an NO 3
- reduction maximum in
spring. Mar. Ecol. Prog. Ser., 24, 65-74.
Jørgensen, K.S., Jensen, H.B. and Sørensen, J., 1984.
Nitrous oxide production from nitrification and
denitrification in marine sediment at low oxygen
concentrations. Can. J. Microbiol., 30, 1073-1078.
Jørgensen, B.B. and Nelson, D.C., 2004. Sulfide oxidation in
marine sediments: Geochemistry meets microbiology.
In: Amen, J.P, Edwards, K.J., Lyons, T.W. (eds) Sulfur
Biogeochemistry – Past and Present. Geological Society
of America Special Paper, 379,63-81.
Kaplan, W.A., 1983. Nitrification. In: Carpenter, J.E.,
Capone, D.G. (eds.) Nitrogen in the marine environment, 139-190, Academic Press, New York.
Kennett, J., 1982. Marine Geology. Prentice Hall, New
Jersey, pp. 813.
Klimant, I, Meyer, V. and Kühl., M., 1995. Fiber-optic
oxygen microsensors, a new tool in aquatic biology.
Limnol. Oceanogr., 40(6), 1159-1165.
Koike, I. and Sørensen, J., 1988. Nitrate Reduction and
Denitrification in Marine Sediments. In: Blackburn,
T.H., Sørensen, J. (eds.) Nitrogen Cycling in Coastal
Marine Environments. SCOPE Reports, 251–273,
John Wiley and Sons, Chichester.
Kolodny, Y. and Luz, B., 1992. Isotope signatures in
phosphate deposits: Formation and diagenetic
history. In: Clauer and Chaudhuri (eds) Isotopic signatures and sedimentary records, Lect. Notes in Earth
Sci. 43, Springer, Heidelberg, 69-121.
Kornberg A., 1995. Inorganic Polyphosphate - Toward
Making a Forgotten Polymer Unforgettable. J.
Bacteriol., 177, 491-496.
Krom, M.D. and Berner, R.A., 1980. Adsorption of
phosphate in anoxic sediments. Limnol. Oceanogr.,
25, 797-806.
Kuypers, M.M.M., Sliekers, A.O., Lavik, G., Schmidt, M.,
Jørgensen, B.B., Kuenen, J.G., Sinninghe Damsté, J.S.,
Strous, M. and Jetten, M.S.M., 2003. Anaerobic
ammonium oxidation by anammox bacteria in the
Black Sea. Nature, 422, 608-611.
Kuypers, M.M.M., Lavik, G., Woebken, D., Schmidt, M.,
Fuchs, B.M., Amann, R., Jørgensen, B.B. and Jetten,
M.S.M., 2005. Massive nitrogen loss from the
Benguela upwelling system through anaerobic
ammonium oxidation. Proc. Natl. Acad. Sci. USA,
102, 6478-6483.
Larsen, L.H., Revsbech, N.P. and Binnerup, S.J., 1996. A
microsensor for nitrate based on immobilized denitrifying bacteria. Appl. Environm. Microbiol., 62 (4),
1248-1251.
Luther, G.W., III., Sundby, B., Lewis, B.L., Brendel, P.J.
and Silverberg, N., 1997. Interactions of manganese
with the nitrogen cycle: Alternative pathways to
dinitrogen. Geochim. Cosmochim. Acta, 61(19),
4043-4052.
Luther, G.W., III., Brendel, P.J., Lewis, B.L., Sundby, B.,
Lefrançois, L., Silverberg, N. and Nuzzio, D.B., 1998.
Simultaneous measurement of O 2 , Mn, Fe, I
- , and S(II) in marine pore waters with a solid-state
voltammetric microelectrode. Limnol. Oceanogr.,
43(2), 325-333.
Martin, J.H., Knauer, G.A., Karl, D.M. and Broenkow,
W.W., 1987. VERTEX: Carbon cycling in the
Northeast Pacific. Deep-Sea Res., 34 (2), 267-285.
Martin, W.R. and Sayles, F.L., 1996. CaCO 3 dissolution in
sediments of the Ceara Rise, western equatorial
Atlantic. Geochim. Cosmochim. Acta, 60, 243-263.
McClellan, G.H., 1980. Mineralogy of carbonate fluorapatites. J. Geol. Soc. London, 137, 675-681.
McHatton, S.C., Barry, J.P.H., Jannasch, W. and Nelson,
D.C., 1996. High nitrate concentrations in vacuolate, autotrophic marine Beggiatoa spp. Appl.
Environ. Microbiol., 62, 954-958.
Middelburg, J.J., Vlug, T. and van der Nat, F.J.W.A., 1993.
Organic matter mineralization in marine sediments.
Glob. Planet. Change, 8, 47-58.
Middelburg, J.J., Soetaert, K., Herman, P.M.J. and Heip,
C.H.R., 1996a. Denitrification in marine sediments: A
model study. Glob. Biogeochem. Cycles, 10, 661-673.
References
burn, T.H., Sørensen, J. (eds.) Nitrogen Cycling in
Coastal Marine Environments. SCOPE Reports, 207249, John Wiley and Sons, Chichester.
Hensen, C., Landenberger, H., Zabel, M., Gundersen, J.K.,
Glud, R.N. and Schulz, H.D., 1997. Simulation of
early diagenetic processes in continental slope
sediments off Southwest Africa: The Computer Model
CoTAM tested. Mar. Geol., 144, 191-210.
Hensen, C., Landenberger, H., Zabel, M. and Schulz,
H.D., 1998. Quantification of diffusive benthic fluxes
of nitrate, phosphate and silicate in the Southern
Atlantic Ocean. Glob. Biogeochem. Cycles, 12, 193210.
Hensen, C., Zabel, M. and Schulz, H.D., 2000. A comparison of benthic nutrient fluxes from deep-sea sediments off Namibia and Argentina. Deep-Sea Res. II,
47, 2029-2050.
Hynes, R.K. and Knowles, R., 1978. Inhibition by acetylene of ammonia oxidation in Nitrosomonas europaea. FEMS Microbiol. Lett., 4, 319-321.
Ingall, E.D. and Van Cappellen, P., 1990. Relation
between sedimentation rate and burial of organic
phosphorus and organic carbon in marine sediments.
Geochim. Cosmochim. Acta, 54, 373-386.
Jahnke, R.A. and Christiansen, M.B., 1989. A freevehicle benthic chamber instrument for sea floor
studies.- Deep-Sea Res., 36, 625-637.
Jahnke, R.A., Heggie, D., Emerson, S. and Grundmanis,
V., 1982. Pore waters of the central Pacific Ocean:
nutrient results.- Earth Planet. Sci. Letters, 61, 233256.
Jahnke, R.A., Reimers, C.E. and Craven, D.B., 1990.
Intensification of recycling of organic matter at the
sea floor near ocean margins.- Nature, 348, 50-54.
Jahnke, R.A., Craven, D.B., McCorkle, D.C. and Reimers,
C.E., 1997. CaCO 3 dissolution in California continental margin sediments: The influence of organic
matter remineralization. Geochim. Cosmochim. Acta,
61(17), 3587-3604.
Jarvis, I., Burnett, W.C., Nathan., Y., Almbaydin, F.,
Attia, K.M., Castro, L.N., Flicoteaux, R., Hilmy,
M.E., Husain, V., Qutawna, A.A., Serjani, A. and
Zanin, Y.N., 1994. Phosphorite geochemistry: stateof-the-art and environmental concerns. In: Föllmi,
K.B. (ed) Concepts and Controversies in Phosphogenesis. Eclogae Geol. Helv., 87, 643-700.
Johnson, K.S., Berelson, W.M., Coale, K.H., Coley, T.L.,
Elrod, V.A., Fairey, W.R., Iams, H.D., Kilgore, T.E.
and Nowicki, J.L., 1992. Manganese flux from
continental margin sediments in a transect through
the oxygen minimum. Science, 257, 1242-1245.
Jørgensen, B.B., 1977. Bacterial sulfate reduction within
reduced microniches of oxidized marine sediments.
Mar. Biol., 41, 7-17.
Jørgensen, B.B. and Sørensen, J., 1985. Seasonal cycles of
O 2 , NO 3
- , and SO 4
2- reduction in estuarine sediments:
The significance of an NO 3
- reduction maximum in
spring. Mar. Ecol. Prog. Ser., 24, 65-74.
Jørgensen, K.S., Jensen, H.B. and Sørensen, J., 1984.
Nitrous oxide production from nitrification and
denitrification in marine sediment at low oxygen
concentrations. Can. J. Microbiol., 30, 1073-1078.
Jørgensen, B.B. and Nelson, D.C., 2004. Sulfide oxidation in
marine sediments: Geochemistry meets microbiology.
In: Amen, J.P, Edwards, K.J., Lyons, T.W. (eds) Sulfur
Biogeochemistry – Past and Present. Geological Society
of America Special Paper, 379,63-81.
Kaplan, W.A., 1983. Nitrification. In: Carpenter, J.E.,
Capone, D.G. (eds.) Nitrogen in the marine environment, 139-190, Academic Press, New York.
Kennett, J., 1982. Marine Geology. Prentice Hall, New
Jersey, pp. 813.
Klimant, I, Meyer, V. and Kühl., M., 1995. Fiber-optic
oxygen microsensors, a new tool in aquatic biology.
Limnol. Oceanogr., 40(6), 1159-1165.
Koike, I. and Sørensen, J., 1988. Nitrate Reduction and
Denitrification in Marine Sediments. In: Blackburn,
T.H., Sørensen, J. (eds.) Nitrogen Cycling in Coastal
Marine Environments. SCOPE Reports, 251–273,
John Wiley and Sons, Chichester.
Kolodny, Y. and Luz, B., 1992. Isotope signatures in
phosphate deposits: Formation and diagenetic
history. In: Clauer and Chaudhuri (eds) Isotopic signatures and sedimentary records, Lect. Notes in Earth
Sci. 43, Springer, Heidelberg, 69-121.
Kornberg A., 1995. Inorganic Polyphosphate - Toward
Making a Forgotten Polymer Unforgettable. J.
Bacteriol., 177, 491-496.
Krom, M.D. and Berner, R.A., 1980. Adsorption of
phosphate in anoxic sediments. Limnol. Oceanogr.,
25, 797-806.
Kuypers, M.M.M., Sliekers, A.O., Lavik, G., Schmidt, M.,
Jørgensen, B.B., Kuenen, J.G., Sinninghe Damsté, J.S.,
Strous, M. and Jetten, M.S.M., 2003. Anaerobic
ammonium oxidation by anammox bacteria in the
Black Sea. Nature, 422, 608-611.
Kuypers, M.M.M., Lavik, G., Woebken, D., Schmidt, M.,
Fuchs, B.M., Amann, R., Jørgensen, B.B. and Jetten,
M.S.M., 2005. Massive nitrogen loss from the
Benguela upwelling system through anaerobic
ammonium oxidation. Proc. Natl. Acad. Sci. USA,
102, 6478-6483.
Larsen, L.H., Revsbech, N.P. and Binnerup, S.J., 1996. A
microsensor for nitrate based on immobilized denitrifying bacteria. Appl. Environm. Microbiol., 62 (4),
1248-1251.
Luther, G.W., III., Sundby, B., Lewis, B.L., Brendel, P.J.
and Silverberg, N., 1997. Interactions of manganese
with the nitrogen cycle: Alternative pathways to
dinitrogen. Geochim. Cosmochim. Acta, 61(19),
4043-4052.
Luther, G.W., III., Brendel, P.J., Lewis, B.L., Sundby, B.,
Lefrançois, L., Silverberg, N. and Nuzzio, D.B., 1998.
Simultaneous measurement of O 2 , Mn, Fe, I
- , and S(II) in marine pore waters with a solid-state
voltammetric microelectrode. Limnol. Oceanogr.,
43(2), 325-333.
Martin, J.H., Knauer, G.A., Karl, D.M. and Broenkow,
W.W., 1987. VERTEX: Carbon cycling in the
Northeast Pacific. Deep-Sea Res., 34 (2), 267-285.
Martin, W.R. and Sayles, F.L., 1996. CaCO 3 dissolution in
sediments of the Ceara Rise, western equatorial
Atlantic. Geochim. Cosmochim. Acta, 60, 243-263.
McClellan, G.H., 1980. Mineralogy of carbonate fluorapatites. J. Geol. Soc. London, 137, 675-681.
McHatton, S.C., Barry, J.P.H., Jannasch, W. and Nelson,
D.C., 1996. High nitrate concentrations in vacuolate, autotrophic marine Beggiatoa spp. Appl.
Environ. Microbiol., 62, 954-958.
Middelburg, J.J., Vlug, T. and van der Nat, F.J.W.A., 1993.
Organic matter mineralization in marine sediments.
Glob. Planet. Change, 8, 47-58.
Middelburg, J.J., Soetaert, K., Herman, P.M.J. and Heip,
C.H.R., 1996a. Denitrification in marine sediments: A
model study. Glob. Biogeochem. Cycles, 10, 661-673.
References