Cutin, 154
Cyanobacteria, 130
Cytosine methylation, 10
D
Darkness, 312
Daurichromenic acid, 254
Deep-sea, 406
Degradation, 79, 84
Delignification, 373, 383, 389, 390
Demethoxylation, 375
Depolymerization, 370, 372, 374, 376, 380, 391
Depolymerize, 370–372, 374, 376, 377, 391
Derivative, 339–361
Deterioration of wood, 369
Deubiquitinases (DUBs), 192, 193
Development, 112–114
fungal, 49
Dicer-independent, 107, 108, 112, 115
Dikaryotic, 145
2,5-Dimethoxyquinone (2,5-DMHQ), 377
Dispensable chromosomes, 25
Distribution, 401
DNA damage, 107, 110
DppV, 249
Drug resistance
antifungal, 55
Dry rot, 379
Dye-decolorizing peroxidases (DyP), 381, 383
E
Early-divergent fungi, 115
Ecological interactions, 268, 280–281
Ecological role, 401–402
Effector genes, 214
Effector proteins, 55
Effectors, 148
Electron donors, 379
Electron microscopy, 144
Elongase, 349
Endo-1,4-b-glucanase, 380, 385
Endobacteria, 147
Endoglucanases, 378, 380
Endophytic lifestyle, 402
Endoplasmic reticulum (ER), 244
Enzymes, 405–406
Epigenetics, 184–188, 196
Epimutant, 115, 116
ER associated degradation (ERAD), 53
ER chaperone, 50
Erosion, 373, 382, 384
ER-phagy, 64
Ethanol, 319, 320, 322, 323, 325, 330, 333
E3 ubiquitin ligases, 189
Euchromatin, 3
Evolution, 375
Exaptation, 136–137
Exoglucanases, 380
Expression sites, 231
Extinct pathway, 271, 274
Extracellular enzymes, 371
Extracellular fungal matrix (ECM), 371
F
Facultative heterochromatin, 9
Fatty acid synthase (FAS), 341, 343–350, 358
Fatty acids, 146, 148, 156, 157, 160, 326, 332
Fbox proteins, 191, 192
Fed batch, 330
Fenton, 373, 374, 376, 377, 390
Fenton reagent, 376
Fermentation, 389, 408
Fermentation temperature, 359
Fiber saturation point (FSP), 371, 379, 388
Fluorescence-activated cell sorting (FACS),
355, 356
Foldase, 53
Folding, 246–247
Fossil fuels, 391
Frequency (FRQ), 79, 86
Frequency-interacting RNA helicase (FRH), 79,
87
Functional annotation, 211
Functional genomics, 215
Fungal genomes, 127
Fungal genotype, 160
Fungi
biotrophic, 59
“FUN-LOV”, 308
G
GCN5, 7
GenBank, 207, 211
Gene-expression cassette, 228
Gene of interest, 233–234
Gene Ontology (GO), 211
Gene prediction, 210–211
Genetic engineering, 273
Subject Index
447
Cyanobacteria, 130
Cytosine methylation, 10
D
Darkness, 312
Daurichromenic acid, 254
Deep-sea, 406
Degradation, 79, 84
Delignification, 373, 383, 389, 390
Demethoxylation, 375
Depolymerization, 370, 372, 374, 376, 380, 391
Depolymerize, 370–372, 374, 376, 377, 391
Derivative, 339–361
Deterioration of wood, 369
Deubiquitinases (DUBs), 192, 193
Development, 112–114
fungal, 49
Dicer-independent, 107, 108, 112, 115
Dikaryotic, 145
2,5-Dimethoxyquinone (2,5-DMHQ), 377
Dispensable chromosomes, 25
Distribution, 401
DNA damage, 107, 110
DppV, 249
Drug resistance
antifungal, 55
Dry rot, 379
Dye-decolorizing peroxidases (DyP), 381, 383
E
Early-divergent fungi, 115
Ecological interactions, 268, 280–281
Ecological role, 401–402
Effector genes, 214
Effector proteins, 55
Effectors, 148
Electron donors, 379
Electron microscopy, 144
Elongase, 349
Endo-1,4-b-glucanase, 380, 385
Endobacteria, 147
Endoglucanases, 378, 380
Endophytic lifestyle, 402
Endoplasmic reticulum (ER), 244
Enzymes, 405–406
Epigenetics, 184–188, 196
Epimutant, 115, 116
ER associated degradation (ERAD), 53
ER chaperone, 50
Erosion, 373, 382, 384
ER-phagy, 64
Ethanol, 319, 320, 322, 323, 325, 330, 333
E3 ubiquitin ligases, 189
Euchromatin, 3
Evolution, 375
Exaptation, 136–137
Exoglucanases, 380
Expression sites, 231
Extinct pathway, 271, 274
Extracellular enzymes, 371
Extracellular fungal matrix (ECM), 371
F
Facultative heterochromatin, 9
Fatty acid synthase (FAS), 341, 343–350, 358
Fatty acids, 146, 148, 156, 157, 160, 326, 332
Fbox proteins, 191, 192
Fed batch, 330
Fenton, 373, 374, 376, 377, 390
Fenton reagent, 376
Fermentation, 389, 408
Fermentation temperature, 359
Fiber saturation point (FSP), 371, 379, 388
Fluorescence-activated cell sorting (FACS),
355, 356
Foldase, 53
Folding, 246–247
Fossil fuels, 391
Frequency (FRQ), 79, 86
Frequency-interacting RNA helicase (FRH), 79,
87
Functional annotation, 211
Functional genomics, 215
Fungal genomes, 127
Fungal genotype, 160
Fungi
biotrophic, 59
“FUN-LOV”, 308
G
GCN5, 7
GenBank, 207, 211
Gene-expression cassette, 228
Gene of interest, 233–234
Gene Ontology (GO), 211
Gene prediction, 210–211
Genetic engineering, 273
Subject Index
447