Maldonado-Mendoza IE, Villalobos-Lo ´pez MA,
Valdez-Ortı ´z A, Lo ´pez-Meyer M (2016) Arbuscular
mycorrhizal
symbiosis-induced
expression
changes in Solanum lycopersicum leaves revealed
by RNA-seq analysis. Plant Mol Biol Rep 34:89–
102
Chabaud M, Genre A, Sieberer BJ, Faccio A, Fournier J,
Novero M, Barker DG, Bonfante P (2011) Arbuscular mycorrhizal hyphopodia and germinated
spore exudates trigger Ca
2+ spiking in the legume
and nonlegume root epidermis. New Phytol
189:347–355
Chang Y, Desiro ` A, Na H, Sandor L, Lipzen A, Clum A,
Barry K, Grigoriev IV, Martin FM, Stajich JE,
Smith ME, Bonito G, Spatafora JW (2018) Phylogenomics of Endogonaceae and evolution of
mycorrhizae within Mucoromycota. New Phytol
222(1):511–525. https://doi.org/10.1111/nph.15613
Charpentier M, Bredemeier R, Wanner G, Takeda N,
Schleiff E, Parniske M (2008) Lotus japonicus CASTOR and POLLUX are ion channels essential for
perinuclear calcium spiking in legume root endosymbiosis. Plant Cell 20:3467–3479
Charpentier M, Sun J, Vaz Martins T, Radhakrishnan
GV, Findlay K, Soumpourou E, Thouin J, Ve ´ry AA,
Sanders D, Morris RJ, Oldroyd GED (2016)
Nuclear-localized cyclic nucleotide-gated channels
mediate symbiotic calcium oscillations. Science
352:1102–1105
Chekanova JA (2015) Long non-coding RNAs and their
functions in plants. Curr Opin Plant Biol 27:207–
216
Chen C, Zou J, Zhang S, Zaitlin D, Zhu L (2009) Strigolactones are a new-defined class of plant hormones
which inhibit shoot branching and mediate the
interaction of plant-AM fungi and plant-parasitic
weeds. Sci Chin C Life Sci/Chin Acad Sci 52
(8):693–700
Chen EC, Mathieu S, Hoffrichter A, Sedzielewska-Toro
K, Peart M, Pelin A, Ndikumana S, Ropars J, Dreissig S, Fuchs J, Brachmann A, Corradi N (2018)
Single nucleus sequencing reveals evidence of
inter-nucleus recombination in arbuscular mycorrhizal fungi. elife 7:pii:e39813. https://doi.org/
10.7554/eLife.39813
Chen ECH, Morin E, Beaudet D, Noel J, Yildirir G,
Ndikumana S, Charron P, St-Onge C, Giorgi J,
Kru ¨ger M, Marton T, Ropars J, Grigoriev IV, Hainaut M, Henrissat B, Roux C, Martin F, Corradi N
(2018b) High intraspecific genome diversity in the
model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol 220:1161–1171
Chialva M, Salvioli A, Daghino S, Ghignone S, Bagnaresi P, Chiapello M, Novero M, Spadaro D, Perotto
S, Bonfante P (2018) Native soils with their microbiotas elicit a state of alert in tomato plants. New
Phytol 220:1296–1308
Chu Q, Wang XX, Yang Y, Chen FJ, Zhang FS, Feng G
(2013) Mycorrhizal responsiveness of maize (Zea
mays L.) genotypes as related to releasing date and
available P content in soil. Mycorrhiza 23:497–505
Corradi C, Brachmann A (2017) Fungal mating in the
most widespread plant symbionts? Trends Plant
Sci 22:175–183
Czaja LF, Hogekamp C, Lamm P, Maillet F, Andres
Martinez E, Samain E, De ´narie ´ J, Kuster H, Hohnjec N (2012) Transcriptional responses towards
diffusible signals from symbiotic microbes reveal
MtNFP-and MtDMI3-dependent reprogramming
of host gene expression by arbuscular mycorrhizal
fungal lipochitooligosaccharides. Plant Physiol
159:1671–1685
Daviere JM, Achard P (2013) Gibberellin signaling in
plants. Development 140:1147–1151
Davison J, Moora M, O ¨ pik M, Adholeya A, Ainsaar L,
Ba ˆ A, Burla S, Diedhiou AG, Hiiesalu I, Jairus T,
Johnson NC, Kane A, Koorem K, Kochar M,
Ndiaye C, Pa ¨rtel M, Reier U, Saks U, Singh R,
Vasar M, Zobel M (2015) Global assessment of
arbuscular mycorrhizal fungus diversity reveals
very low endemism. Science 349:970–973
Davison J, Moora M, O ¨ pik M, Ainsaar L, Ducousso M,
Hiiesalu I, Jairus T, Johnson N, Jourand P, Kalamees R, Koorem K, Meyer JY, Pu ¨ssa K, Reier U,
Pa ¨rtel M, Semchenko M, Traveset A, Vasar M,
Zobel M (2018) Microbial island biogeography:
isolation shapes the life history characteristics
but not diversity of root symbiotic fungal communities. ISME J12:2211–2224
Delaux PM, Se ´jalon-Delmas N, Be ´card G, Ane ´ M (2013)
Evolution of the plant-microbe symbiotic
“toolkit.”. Trends Plant Sci 18(6):298–304
Delaux PM, Radhakrishnan GV, Jayaraman D, Cheema
J, Malbreil M, Volkening JD, Sekimoto H,
Nishiyama T, Melkonian M, Pokorny L, Rothfels
CJ, Sederoff HW, Stevenson DW, Surek B, Zhang
Y, Sussman MR, Dunand C, Morris RJ, Roux C,
Wong GK-S, Oldroyd GED, Ane ´ J-M (2015) Algal
ancestor of land plants was preadapted for symbiosis. Proc Natl Acad Sci U S A 112:13390–13395
De ´narie ´ J, Cullimore J (1993) Lipo-oligosaccharide
nodulation factors: a minireview new class of signaling molecules mediating recognition and morphogenesis. Cell 74:951–954
De ´narie ´ J, Debelle ´ F, Prome ´ JC (1996) Rhizobium lipochitooligosaccharide nodulation factors: signaling
molecules mediating recognition and morphogenesis. Annu Rev Biochem 65:503–535
Desiro ` A, Duckett JG, Pressel S, Villarreal JC, Bidartondo MI (2013) Fungal symbioses in hornworts: a
chequered history. Proc Biol Sci 280
(1759):20130207
De Vita P, Avio L, Sbrana C, Laido ` G, Marone D, Mastrangelo AM, Cattivelli L, Giovannetti M (2018)
Genetic markers associated to arbuscular mycorrhizal colonization in durum wheat. Sci Rep
8:10612
162
L. Lanfranco et al.
Valdez-Ortı ´z A, Lo ´pez-Meyer M (2016) Arbuscular
mycorrhizal
symbiosis-induced
expression
changes in Solanum lycopersicum leaves revealed
by RNA-seq analysis. Plant Mol Biol Rep 34:89–
102
Chabaud M, Genre A, Sieberer BJ, Faccio A, Fournier J,
Novero M, Barker DG, Bonfante P (2011) Arbuscular mycorrhizal hyphopodia and germinated
spore exudates trigger Ca
2+ spiking in the legume
and nonlegume root epidermis. New Phytol
189:347–355
Chang Y, Desiro ` A, Na H, Sandor L, Lipzen A, Clum A,
Barry K, Grigoriev IV, Martin FM, Stajich JE,
Smith ME, Bonito G, Spatafora JW (2018) Phylogenomics of Endogonaceae and evolution of
mycorrhizae within Mucoromycota. New Phytol
222(1):511–525. https://doi.org/10.1111/nph.15613
Charpentier M, Bredemeier R, Wanner G, Takeda N,
Schleiff E, Parniske M (2008) Lotus japonicus CASTOR and POLLUX are ion channels essential for
perinuclear calcium spiking in legume root endosymbiosis. Plant Cell 20:3467–3479
Charpentier M, Sun J, Vaz Martins T, Radhakrishnan
GV, Findlay K, Soumpourou E, Thouin J, Ve ´ry AA,
Sanders D, Morris RJ, Oldroyd GED (2016)
Nuclear-localized cyclic nucleotide-gated channels
mediate symbiotic calcium oscillations. Science
352:1102–1105
Chekanova JA (2015) Long non-coding RNAs and their
functions in plants. Curr Opin Plant Biol 27:207–
216
Chen C, Zou J, Zhang S, Zaitlin D, Zhu L (2009) Strigolactones are a new-defined class of plant hormones
which inhibit shoot branching and mediate the
interaction of plant-AM fungi and plant-parasitic
weeds. Sci Chin C Life Sci/Chin Acad Sci 52
(8):693–700
Chen EC, Mathieu S, Hoffrichter A, Sedzielewska-Toro
K, Peart M, Pelin A, Ndikumana S, Ropars J, Dreissig S, Fuchs J, Brachmann A, Corradi N (2018)
Single nucleus sequencing reveals evidence of
inter-nucleus recombination in arbuscular mycorrhizal fungi. elife 7:pii:e39813. https://doi.org/
10.7554/eLife.39813
Chen ECH, Morin E, Beaudet D, Noel J, Yildirir G,
Ndikumana S, Charron P, St-Onge C, Giorgi J,
Kru ¨ger M, Marton T, Ropars J, Grigoriev IV, Hainaut M, Henrissat B, Roux C, Martin F, Corradi N
(2018b) High intraspecific genome diversity in the
model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol 220:1161–1171
Chialva M, Salvioli A, Daghino S, Ghignone S, Bagnaresi P, Chiapello M, Novero M, Spadaro D, Perotto
S, Bonfante P (2018) Native soils with their microbiotas elicit a state of alert in tomato plants. New
Phytol 220:1296–1308
Chu Q, Wang XX, Yang Y, Chen FJ, Zhang FS, Feng G
(2013) Mycorrhizal responsiveness of maize (Zea
mays L.) genotypes as related to releasing date and
available P content in soil. Mycorrhiza 23:497–505
Corradi C, Brachmann A (2017) Fungal mating in the
most widespread plant symbionts? Trends Plant
Sci 22:175–183
Czaja LF, Hogekamp C, Lamm P, Maillet F, Andres
Martinez E, Samain E, De ´narie ´ J, Kuster H, Hohnjec N (2012) Transcriptional responses towards
diffusible signals from symbiotic microbes reveal
MtNFP-and MtDMI3-dependent reprogramming
of host gene expression by arbuscular mycorrhizal
fungal lipochitooligosaccharides. Plant Physiol
159:1671–1685
Daviere JM, Achard P (2013) Gibberellin signaling in
plants. Development 140:1147–1151
Davison J, Moora M, O ¨ pik M, Adholeya A, Ainsaar L,
Ba ˆ A, Burla S, Diedhiou AG, Hiiesalu I, Jairus T,
Johnson NC, Kane A, Koorem K, Kochar M,
Ndiaye C, Pa ¨rtel M, Reier U, Saks U, Singh R,
Vasar M, Zobel M (2015) Global assessment of
arbuscular mycorrhizal fungus diversity reveals
very low endemism. Science 349:970–973
Davison J, Moora M, O ¨ pik M, Ainsaar L, Ducousso M,
Hiiesalu I, Jairus T, Johnson N, Jourand P, Kalamees R, Koorem K, Meyer JY, Pu ¨ssa K, Reier U,
Pa ¨rtel M, Semchenko M, Traveset A, Vasar M,
Zobel M (2018) Microbial island biogeography:
isolation shapes the life history characteristics
but not diversity of root symbiotic fungal communities. ISME J12:2211–2224
Delaux PM, Se ´jalon-Delmas N, Be ´card G, Ane ´ M (2013)
Evolution of the plant-microbe symbiotic
“toolkit.”. Trends Plant Sci 18(6):298–304
Delaux PM, Radhakrishnan GV, Jayaraman D, Cheema
J, Malbreil M, Volkening JD, Sekimoto H,
Nishiyama T, Melkonian M, Pokorny L, Rothfels
CJ, Sederoff HW, Stevenson DW, Surek B, Zhang
Y, Sussman MR, Dunand C, Morris RJ, Roux C,
Wong GK-S, Oldroyd GED, Ane ´ J-M (2015) Algal
ancestor of land plants was preadapted for symbiosis. Proc Natl Acad Sci U S A 112:13390–13395
De ´narie ´ J, Cullimore J (1993) Lipo-oligosaccharide
nodulation factors: a minireview new class of signaling molecules mediating recognition and morphogenesis. Cell 74:951–954
De ´narie ´ J, Debelle ´ F, Prome ´ JC (1996) Rhizobium lipochitooligosaccharide nodulation factors: signaling
molecules mediating recognition and morphogenesis. Annu Rev Biochem 65:503–535
Desiro ` A, Duckett JG, Pressel S, Villarreal JC, Bidartondo MI (2013) Fungal symbioses in hornworts: a
chequered history. Proc Biol Sci 280
(1759):20130207
De Vita P, Avio L, Sbrana C, Laido ` G, Marone D, Mastrangelo AM, Cattivelli L, Giovannetti M (2018)
Genetic markers associated to arbuscular mycorrhizal colonization in durum wheat. Sci Rep
8:10612
162
L. Lanfranco et al.