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Stratification of diversity and activity of methanogenic and methanotrophic microorganisms
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(1993). https://doi.org/10.1007/bf00337207
99. Verhamme, D.T., Prosser, J.I., Nicol, G.W.: Ammonia concentration determines differential
growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J. 5, 1067
(2011). https://doi.org/10.1038/ismej.2010.191
100. Wang, N., Chang, Z.Z., Xue, X.M., Yu, J.G., Shi, X.X., Ma, L.Q., Li, H.B.: Biochar decreases
nitrogen oxide and enhances methane emissions via altering microbial community composition of anaerobic paddy soil. Sci. Total Environ. 581, 689–696 (2017). https://doi.org/10.
1016/j.scitotenv.2016.12.181
101. Wang, W., Lai, D.Y.F., Abid, A.A., Neogi, S., Xu, X., Wang, C.: Effects of steel slag and
biochar incorporation on active soil organic carbon pools in a subtropical paddy. Field Agron.
8, 135 (2018). https://doi.org/10.3390/agronomy8080135
S. Ambreetha et al.
84. Shu, W., Pablo, G.P., Jun, Y., Danfeng, H.: Abundance and diversity of nitrogen-fixing bacteria
in rhizosphere and bulk paddy soil under different duration of organic management. World J.
Microbiol. Biotechnol. 28, 493–503 (2012). https://doi.org/10.1007/s11274-011-0840-1
85. Shuai, W., Jaffé, P.R.: Anaerobic ammonium oxidation coupled to iron reduction in
constructed wetland mesocosms. Sci. Total Environ. 648, 984–992 (2019). https://doi.org/
10.1016/j.scitotenv.2018.08.189
86. Singh, Y., Ahmad, J., Musarrat, J., Ehtesham, N.Z., Hasnain, S.E.: Emerging importance of
holobionts in evolution and in probiotics. Gut. Pathogens 5, 12 (2013). https://doi.org/10.
1186/1757-4749-5-12
87. Sullivan, T.S., Gadd, G.M.: Metal bioavailability and the soil microbiome. In: Sparks, D.L.
(ed.), Advances in Agronomy, vol 155, pp. 79–120. Academic Press (2019). https://doi.org/
10.1016/bs.agron.2019.01.004
88. Sun, L., Lu, Y., Yu, F., Kronzucker, H.J., Shi, W.: Biological nitrification inhibition by rice
root exudates and its relationship with nitrogen-use efficiency. New Phytol. 212, 646–656
(2016). https://doi.org/10.1111/nph.14057
89. Szekeres, S., Kiss, I., Kalman, M., Soares, M.I.M.: Microbial population in a hydrogendependent denitrification reactor. Water Res. 36, 4088–4094 (2002)
90. Takakai, F., et al.: Fate of fertilizer-derived N applied to enhance rice straw decomposition in
a paddy field during the fallow season under cool temperature conditions. Agriculture 8, 50
(2018). https://doi.org/10.3390/agriculture8040050
91. Tan, Z., Hurek, T., Reinhold-Hurek, B.: Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice. Environ. Microbiol. 5, 1009–1015
(2003). https://doi.org/10.1046/j.1462-2920.2003.00491.x
92. Tian, G., et al.: Improving rice population productivity by reducing nitrogen rate and increasing
plant density. PLoS ONE 12, e0182310–e0182310 (2017). https://doi.org/10.1371/journal.
pone.0182310
93. Tian, W., et al.: Responses of microbial activity, abundance, and community in wheat soil
after three years of heavy fertilization with manure-based compost and inorganic nitrogen.
Agric. Ecosyst. Environ. 213, 219–227 (2015). https://doi.org/10.1016/j.agee.2015.08.009
94. Toju, H., et al.: Core microbiomes for sustainable agroecosystems. Nat. Plants 4, 247–257
(2018). https://doi.org/10.1038/s41477-018-0139-4
95. Tyagi, L., Verma, A., Singh, S.N.: Investigation on temporal variation in methane emission
from different rice cultivars under the influence of weeds. Environ. Monitor Assess 93, 91–101
(2004). https://doi.org/10.1023/B:EMAS.0000016793.13260.6e
96. Vaksmaa, A., van Alen, T.A., Ettwig, K.F., Lupotto, E., Valè, G., Jetten, M.S.M., Lüke, C.:
Stratification of diversity and activity of methanogenic and methanotrophic microorganisms
in a nitrogen-fertilized italian paddy soil. Front. Microbiol. 8 (2017). https://doi.org/10.3389/
fmicb.2017.02127
97. van Kessel, M.A.H.J., et al.: Complete nitrification by a single microorganism. Nature 528,
555 (2015). https://doi.org/10.1038/nature16459
98. Ventura, W., Watanabe, I.: Green manure production of Azolla microphylla and Sesbania
rostrata and their long-term effects on rice yields and soil fertility. Biol Fert Soils 15, 241–248
(1993). https://doi.org/10.1007/bf00337207
99. Verhamme, D.T., Prosser, J.I., Nicol, G.W.: Ammonia concentration determines differential
growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J. 5, 1067
(2011). https://doi.org/10.1038/ismej.2010.191
100. Wang, N., Chang, Z.Z., Xue, X.M., Yu, J.G., Shi, X.X., Ma, L.Q., Li, H.B.: Biochar decreases
nitrogen oxide and enhances methane emissions via altering microbial community composition of anaerobic paddy soil. Sci. Total Environ. 581, 689–696 (2017). https://doi.org/10.
1016/j.scitotenv.2016.12.181
101. Wang, W., Lai, D.Y.F., Abid, A.A., Neogi, S., Xu, X., Wang, C.: Effects of steel slag and
biochar incorporation on active soil organic carbon pools in a subtropical paddy. Field Agron.
8, 135 (2018). https://doi.org/10.3390/agronomy8080135