N Fertilization Dependent Bacterial and Archaeal …
83
65. Mo’allim. A.A., Kamal, M.R., Muhammed, H.H., Mohd Soom, M.A., Mohamed Zawawi,
M.A.b., Wayayok, A., Che Man, H.B.: Assessment of Nutrient Leaching in Flooded Paddy
Rice Field Experiment Using Hydrus-1D Water 10, 785 (2018)
66. Moseman-Valtierra, S.M., Armaiz-Nolla, K., Levin, L.A.: Wetland response to sedimentation
and nitrogen loading: diversification and inhibition of nitrogen-fixing microbes. Ecol. Appl.
20, 1556–1568 (2010). https://doi.org/10.1890/08-1881.1
67. Nannipieri, P., Eldor, P.: The chemical and functional characterization of soil N and its biotic
components. Soil Biol. Biochem. 41, 2357–2369 (2009). https://doi.org/10.1016/j.soilbio.
2009.07.013
68. Nicolaisen, M.H., Risgaard-Petersen, N., Revsbech, N.P., Reichardt, W., Ramsing, N.B.: Nitrification–denitrification dynamics and community structure of ammonia oxidizing bacteria in
a high yield irrigated Philippine rice field FEMS. Microbiol. Ecol. 49, 359–369 (2004). https://
doi.org/10.1016/j.femsec.2004.04.015
69. Noll, M., Matthies, D., Frenzel, P., Derakshani, M., Liesack, W.: Succession of bacterial
community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 7,
382–395 (2005). https://doi.org/10.1111/j.1462-2920.2005.00700.x
70. Pandey, A., Suter, H., He, J.Z., Hu, H.W., Chen, D.: Nitrogen addition decreases dissimilatory
nitrate reduction to ammonium in rice paddies. Appl. Environ. Microbiol. 84, e00870-e1818
(2018). https://doi.org/10.1128/aem.00870-18
71. Peng, W., Zeng, Y., Shi, Q., Huang, S.: Responses of rice yield and the fate of fertilizer
nitrogen to soil organic carbon Plant. Soil Environ. 63, 416–421 (2017)
72. Ponnamperuma, F.N.: The chemistry of submerged soils. In: Brady, N.C. (ed.), Advances
in Agronomy, vol 24, pp. 29–96. Academic Press (1972). https://doi.org/10.1016/S0065-211
3(08)60633-1
73. Preethi, B., Poorniammal, R., Balachandar, D., Karthikeyan, S., Chendrayan, K., Bhattacharyya, P., Adhya, T.K.: Long-term organic nutrient managements foster the biological
properties and carbon sequestering capability of a wetland rice soil Arch. Agron. Soil Sci. 59
1607–1624 (2013). 10.1080/03650340.2012.755260
74. Prosnansky, M., Sakakibara, Y., Kuroda, M.: High-rate denitrification and SS rejection by
biofilm-electrode reactor (BER) combined with microfiltration. Water Res. 36, 4801–4810
(2002)
75. Ranatunga, T., Hiramatsu, K., Onishi, T., Ishiguro, Y.: Process of denitrification in flooded
rice soils Rev. Agric. Sci. 6, 21–33 (2018). 10.7831/ras.6.21
76. Reddy, K., Patrick, W.: Nitrogen fixation in flooded soil. Soil Sci. 128, 80–85 (1979)
77. Roth, P.J., et al.: Accumulation of nitrogen and microbial residues during 2000 years of rice
paddy and non-paddy soil development in the Yangtze River Delta. China Glob. Change Biol.
17, 3405–3417 (2011). https://doi.org/10.1111/j.1365-2486.2011.02500.x
78. Sahrawat, K.L.: Redox potential and pH as major drivers of fertility in submerged rice soils:
a conceptual framework for management. Commun. Soil Sci. Plant Anal. 46, 1597–1606
(2015). https://doi.org/10.1080/00103624.2015.1043451
79. Said-Pullicino, D., Cucu, M.A., Sodano, M., Birk, J.J., Glaser, B., Celi, L.: Nitrogen immobilization in paddy soils as affected by redox conditions and rice straw incorporation. Geoderma
228–229, 44–53 (2014). https://doi.org/10.1016/j.geoderma.2013.06.020
80. Samaddar, S., Chatterjee, P., Truu, J., Anandham, R., Kim, S., Sa, T.: Long-term phosphorus
limitation changes the bacterial community structure and functioning in paddy soils. Appl.
Soil Ecol. 134, 111–115 (2019). https://doi.org/10.1016/j.apsoil.2018.10.016
81. Sarwar, G., Schmeisky, H., Hussain, N., Muhammad, S., Tahir, M., Saleem, U.: Variations
in nutrient concentrations of wheat and paddy as affected by different levels of compost and
chemical fertilizer in normal soil. Pak. J. Bot. 41, 2403–2410 (2009)
82. Savant, N., De Datta, S.: Nitrogen transformations in wetland rice soils. In: Advances in
Agronomy, vol 35, pp. 241–302. Elsevier (1982)
83. Shade, A., Handelsman, J.: Beyond the Venn diagram: the hunt for a core microbiome. Environ.
Microbiol. 14, 4–12 (2012). https://doi.org/10.1111/j.1462-2920.2011.02585.x
83
65. Mo’allim. A.A., Kamal, M.R., Muhammed, H.H., Mohd Soom, M.A., Mohamed Zawawi,
M.A.b., Wayayok, A., Che Man, H.B.: Assessment of Nutrient Leaching in Flooded Paddy
Rice Field Experiment Using Hydrus-1D Water 10, 785 (2018)
66. Moseman-Valtierra, S.M., Armaiz-Nolla, K., Levin, L.A.: Wetland response to sedimentation
and nitrogen loading: diversification and inhibition of nitrogen-fixing microbes. Ecol. Appl.
20, 1556–1568 (2010). https://doi.org/10.1890/08-1881.1
67. Nannipieri, P., Eldor, P.: The chemical and functional characterization of soil N and its biotic
components. Soil Biol. Biochem. 41, 2357–2369 (2009). https://doi.org/10.1016/j.soilbio.
2009.07.013
68. Nicolaisen, M.H., Risgaard-Petersen, N., Revsbech, N.P., Reichardt, W., Ramsing, N.B.: Nitrification–denitrification dynamics and community structure of ammonia oxidizing bacteria in
a high yield irrigated Philippine rice field FEMS. Microbiol. Ecol. 49, 359–369 (2004). https://
doi.org/10.1016/j.femsec.2004.04.015
69. Noll, M., Matthies, D., Frenzel, P., Derakshani, M., Liesack, W.: Succession of bacterial
community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 7,
382–395 (2005). https://doi.org/10.1111/j.1462-2920.2005.00700.x
70. Pandey, A., Suter, H., He, J.Z., Hu, H.W., Chen, D.: Nitrogen addition decreases dissimilatory
nitrate reduction to ammonium in rice paddies. Appl. Environ. Microbiol. 84, e00870-e1818
(2018). https://doi.org/10.1128/aem.00870-18
71. Peng, W., Zeng, Y., Shi, Q., Huang, S.: Responses of rice yield and the fate of fertilizer
nitrogen to soil organic carbon Plant. Soil Environ. 63, 416–421 (2017)
72. Ponnamperuma, F.N.: The chemistry of submerged soils. In: Brady, N.C. (ed.), Advances
in Agronomy, vol 24, pp. 29–96. Academic Press (1972). https://doi.org/10.1016/S0065-211
3(08)60633-1
73. Preethi, B., Poorniammal, R., Balachandar, D., Karthikeyan, S., Chendrayan, K., Bhattacharyya, P., Adhya, T.K.: Long-term organic nutrient managements foster the biological
properties and carbon sequestering capability of a wetland rice soil Arch. Agron. Soil Sci. 59
1607–1624 (2013). 10.1080/03650340.2012.755260
74. Prosnansky, M., Sakakibara, Y., Kuroda, M.: High-rate denitrification and SS rejection by
biofilm-electrode reactor (BER) combined with microfiltration. Water Res. 36, 4801–4810
(2002)
75. Ranatunga, T., Hiramatsu, K., Onishi, T., Ishiguro, Y.: Process of denitrification in flooded
rice soils Rev. Agric. Sci. 6, 21–33 (2018). 10.7831/ras.6.21
76. Reddy, K., Patrick, W.: Nitrogen fixation in flooded soil. Soil Sci. 128, 80–85 (1979)
77. Roth, P.J., et al.: Accumulation of nitrogen and microbial residues during 2000 years of rice
paddy and non-paddy soil development in the Yangtze River Delta. China Glob. Change Biol.
17, 3405–3417 (2011). https://doi.org/10.1111/j.1365-2486.2011.02500.x
78. Sahrawat, K.L.: Redox potential and pH as major drivers of fertility in submerged rice soils:
a conceptual framework for management. Commun. Soil Sci. Plant Anal. 46, 1597–1606
(2015). https://doi.org/10.1080/00103624.2015.1043451
79. Said-Pullicino, D., Cucu, M.A., Sodano, M., Birk, J.J., Glaser, B., Celi, L.: Nitrogen immobilization in paddy soils as affected by redox conditions and rice straw incorporation. Geoderma
228–229, 44–53 (2014). https://doi.org/10.1016/j.geoderma.2013.06.020
80. Samaddar, S., Chatterjee, P., Truu, J., Anandham, R., Kim, S., Sa, T.: Long-term phosphorus
limitation changes the bacterial community structure and functioning in paddy soils. Appl.
Soil Ecol. 134, 111–115 (2019). https://doi.org/10.1016/j.apsoil.2018.10.016
81. Sarwar, G., Schmeisky, H., Hussain, N., Muhammad, S., Tahir, M., Saleem, U.: Variations
in nutrient concentrations of wheat and paddy as affected by different levels of compost and
chemical fertilizer in normal soil. Pak. J. Bot. 41, 2403–2410 (2009)
82. Savant, N., De Datta, S.: Nitrogen transformations in wetland rice soils. In: Advances in
Agronomy, vol 35, pp. 241–302. Elsevier (1982)
83. Shade, A., Handelsman, J.: Beyond the Venn diagram: the hunt for a core microbiome. Environ.
Microbiol. 14, 4–12 (2012). https://doi.org/10.1111/j.1462-2920.2011.02585.x