Jumpponen A (2001) Dark septate endophytes – are they mycorrhizal? Mycorrhiza 11:207–211
Jumpponen A, Trappe JM (1998) Dark septate endophytes: a review of facultative biotrophic rootcolonizing fungi. New Phytol 140:295–310
Kim J, Lee S, Ra J, Lee H, Huh N, Kim G (2010) Fungi associated with bamboo and their decay
capabilities. Holzforschung 65:271–275
Kitts CL (2001) Terminal restriction fragment patterns: a tool for comparing microbial communities
and assessing community dynamics. Curr Issues Intest Microbiol 2:17–25
Kobayashi T, Miki N, Kato K (2006) Understory removal increases carbon gain and transpiration in
the overstory of birch (Betula ermanii) stands in northern Hokkaido, Japan: trends in leaf, shoot,
and canopy. Proceedings of international workshop on H O and CO exchange in Siberia, pp 19–
22
Kowalchuk GA, De Souza FA, Van Veen JA (2002) Community analysis of arbuscular mycorrhizal
fungi associated with Ammophila arenaria in Dutch coastal sand dunes. Mol Ecol 11:571–581
Landeweert R, Leeflang P, Kuyper TW, Hoffland E, Rosling A, Wernars K, Smit E (2003)
Molecular identification of ectomycorrhizal mycelium in soil horizons. Appl Environ Microbiol
69:327–333
Landeweert R, Leeflang P, Smit E, Kuyper TW (2005) Diversity of an ectomycorrhizal fungal
community studied by a root tip and total soil DNA approach. Mycorrhiza 15:1–6
Lindahl BD, Ihrmark K, Boberg J, Trumbore SE, Högberg P, Stenlid J, Finlay RD (2006) Spatial
separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. New
Phytol 173:611–620
Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by
determining terminal restriction fragment length polymorphisms of genes encoding 16S
rRNA. Appl Environ Microbiol 63:4516–4522
LoBuglio KF (1999) In: Cairney JWG, Chambers SM (eds) Ectomycorrhizal Fungi key genera in
profile. Springer-Verlag, Berlin, pp 287–309
LoBuglio KF, Berbee ML, Taylor JW (1996) Phylogenetic origins of the asexual mycorrhizal
symbiont Cenococcum geophilum Fr. & other mycorrhizal fungi among the Ascomycetes. Mol
Phylogenet Evol 6:287–294
Lukow T, Dunfield PF, Liesack W (2000) Use of the T-RFLP technique to assess spatial and
temporal changes in the bacterial community structure within an agricultural soil planted with
transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32:241–247
Ma WK, Siciliano SD, Germida JJ (2005) A PCR–DGGE method for detecting arbuscular
mycorrhizal fungi in cultivated soils. Soil Biol Biochem 37:1589–1597
Marsh TL (1999) Terminal restriction fragment length polymorphism (T-RFLP): an emerging
method for characterizing diversity among homologous populations of amplification products.
Curr Opin Microbiol 2:323–327
Massicotte HB, Trappe JM, Peterson RL, Mel Ville LH (1992) Studies in Cenococcum geophilum.
II. Sclerotium morphology, germination, and formation in pure culture and growth pouches. Can
J Bot 70:125–132
Matsuda Y, Hayakawa N, Ito S (2009) Local and microscale distributions of Cenococcum
geophilum in soils of coastal pine forests. Fungal Ecol 2:31–35
Matsumoto N, Tajimi A (1988) Life-history strategy in Typhula incarnate and T. Ishikariensis
biotypes A, B, and C as determined by sclerotium production. Can J Bot 66:2485–2490
Mummey DL, Rillig MC, Holben WE (2005) Neighboring plant influences on arbuscular mycorrhizal fungal community composition as assessed by T-RFLP analysis. Plant Soil 271:83–90
Nakashizuka T (1988) Regeneration of beech (Fagus crenata) after the simultaneous death of
undergrowing dwarf bamboo (Sasa kurilensis). Ecol Res 3:21–35
Narisawa K, Tokumasu S, Hashiba T (1998) Suppression of clubroot formation in Chinese cabbage
by the root endophytic fungus, Heteroconium chaetospira. Plant Pathol 47:206–210
Nishizawa T, Zhaorigetu KM, Sato Y, Kaneko N, Ohta H (2010) Molecular characterization of
fungal communities in non-tilled, cover-cropped upland rice field soils. Microbes Environ
25:204–210
32
K. Narisawa et al.
Jumpponen A, Trappe JM (1998) Dark septate endophytes: a review of facultative biotrophic rootcolonizing fungi. New Phytol 140:295–310
Kim J, Lee S, Ra J, Lee H, Huh N, Kim G (2010) Fungi associated with bamboo and their decay
capabilities. Holzforschung 65:271–275
Kitts CL (2001) Terminal restriction fragment patterns: a tool for comparing microbial communities
and assessing community dynamics. Curr Issues Intest Microbiol 2:17–25
Kobayashi T, Miki N, Kato K (2006) Understory removal increases carbon gain and transpiration in
the overstory of birch (Betula ermanii) stands in northern Hokkaido, Japan: trends in leaf, shoot,
and canopy. Proceedings of international workshop on H O and CO exchange in Siberia, pp 19–
22
Kowalchuk GA, De Souza FA, Van Veen JA (2002) Community analysis of arbuscular mycorrhizal
fungi associated with Ammophila arenaria in Dutch coastal sand dunes. Mol Ecol 11:571–581
Landeweert R, Leeflang P, Kuyper TW, Hoffland E, Rosling A, Wernars K, Smit E (2003)
Molecular identification of ectomycorrhizal mycelium in soil horizons. Appl Environ Microbiol
69:327–333
Landeweert R, Leeflang P, Smit E, Kuyper TW (2005) Diversity of an ectomycorrhizal fungal
community studied by a root tip and total soil DNA approach. Mycorrhiza 15:1–6
Lindahl BD, Ihrmark K, Boberg J, Trumbore SE, Högberg P, Stenlid J, Finlay RD (2006) Spatial
separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. New
Phytol 173:611–620
Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by
determining terminal restriction fragment length polymorphisms of genes encoding 16S
rRNA. Appl Environ Microbiol 63:4516–4522
LoBuglio KF (1999) In: Cairney JWG, Chambers SM (eds) Ectomycorrhizal Fungi key genera in
profile. Springer-Verlag, Berlin, pp 287–309
LoBuglio KF, Berbee ML, Taylor JW (1996) Phylogenetic origins of the asexual mycorrhizal
symbiont Cenococcum geophilum Fr. & other mycorrhizal fungi among the Ascomycetes. Mol
Phylogenet Evol 6:287–294
Lukow T, Dunfield PF, Liesack W (2000) Use of the T-RFLP technique to assess spatial and
temporal changes in the bacterial community structure within an agricultural soil planted with
transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32:241–247
Ma WK, Siciliano SD, Germida JJ (2005) A PCR–DGGE method for detecting arbuscular
mycorrhizal fungi in cultivated soils. Soil Biol Biochem 37:1589–1597
Marsh TL (1999) Terminal restriction fragment length polymorphism (T-RFLP): an emerging
method for characterizing diversity among homologous populations of amplification products.
Curr Opin Microbiol 2:323–327
Massicotte HB, Trappe JM, Peterson RL, Mel Ville LH (1992) Studies in Cenococcum geophilum.
II. Sclerotium morphology, germination, and formation in pure culture and growth pouches. Can
J Bot 70:125–132
Matsuda Y, Hayakawa N, Ito S (2009) Local and microscale distributions of Cenococcum
geophilum in soils of coastal pine forests. Fungal Ecol 2:31–35
Matsumoto N, Tajimi A (1988) Life-history strategy in Typhula incarnate and T. Ishikariensis
biotypes A, B, and C as determined by sclerotium production. Can J Bot 66:2485–2490
Mummey DL, Rillig MC, Holben WE (2005) Neighboring plant influences on arbuscular mycorrhizal fungal community composition as assessed by T-RFLP analysis. Plant Soil 271:83–90
Nakashizuka T (1988) Regeneration of beech (Fagus crenata) after the simultaneous death of
undergrowing dwarf bamboo (Sasa kurilensis). Ecol Res 3:21–35
Narisawa K, Tokumasu S, Hashiba T (1998) Suppression of clubroot formation in Chinese cabbage
by the root endophytic fungus, Heteroconium chaetospira. Plant Pathol 47:206–210
Nishizawa T, Zhaorigetu KM, Sato Y, Kaneko N, Ohta H (2010) Molecular characterization of
fungal communities in non-tilled, cover-cropped upland rice field soils. Microbes Environ
25:204–210
32
K. Narisawa et al.