83
Ferrer M, Ruiz A, Lanza F, Haange SB, Oberbach A, Till H, Bargiela R, Campoy C, Segura MT,
Richter M, von Bergen M, Seifert J, Suarez A (2013) Microbiota from the distal guts of lean
and obese adolescents exhibit partial functional redundancy besides clear differences in community structure. Environ Microbiol 15:211–226
Ferrigo D, Raiola A, Rasera R, Causin R (2014) Trichoderma harzianum seed treatment controls
Fusarium verticillioides colonization and fumonisin contamination in maize under field conditions. Crop Prot 65:51–56
Fic E, Kedracka-Krok S, Jankowska U, Pirog A, Dziedzicka-Wasylewska M (2010) Comparison
of protein precipitation methods for various rat brain structures prior to proteomic analysis.
Electrophoresis 31:3573–3579
Fierer N, Jackson JA, Vilgalys R, Jackson RB (2005) Assessment of soil microbialcommunity structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol
71:4117–4120
Figueroa-Lopez AM, Cordero-Ramirez JD, Martinez-Alvarez JC, Lopez-Meyer M, LizarragaSanchez GJ, Felix-Gastelum R, Castro-Martinez C, Maldonado-Mendoza IE (2016)
Rhizospheric bacteria of maize with potential for biocontrol of Fusarium verticillioides.
Springerplus 5:330
Filippo CD, Ramazzotti M, Fontana P, Cavalieri D (2012) Bioinformatic approaches for functional
annotation and pathway inference in metagenomics data. Brief Bioinform 13:696–710
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K,
Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M (2014) the protein families database.
Nucleic Acids Res 42:D222–D230
Fischer SG, Lerman LS (1979) Length-independent separation of DNA restriction fragments in
two dimensional gel electrophoresis. Cell 16:191–200
Food and Agriculture Organization of the United Nations (2013) Climate smart agriculture sourcebook. FAO Rome, Italy
Franzmann PD, Patterson BM, Power TR, Nichols PD, Davis GB (1996) Microbial biomass in
a shallow, urban aquifer contaminated with aromatic hydrocarbons: analysis of phospholipid
fatty acid content and composition. J Appl Bacteriol 80:617–625
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Izard J (2014) Relating
the metatranscriptome and metagenome of the human gut. Proc Natl Acad Sci 111:E2329–
E2338. https://doi.org/10.1073/pnas.1319284111
Friedman J, Alm EJ (2012) Inferring Correlation Networks from Genomic Survey Data. PLoS
Comput Biol 8:e1002687
Gao X, Gong Y, Huo Y, Han Q, Kang Z, Huang L (2015) Endophytic Bacillus subtilis strain
E1R-J is a promising biocontrol agent for wheat powdery mildew. Biomed Res Int. https://doi.
org/10.1155/2015/462645
Gawad C, Koh W, Quake SR (2016) Single-cell genome sequencing: current state of the science.
Nat Rev Genet 3:175–188
Gebreil AS, Abraham W-R (2016) Diversity and activity of bacterial biofilm communities growing
on hexachlorocyclohexane. Water Air Soil Pollut 227:295
Gelfand I, Sahajpal R, Zhang X, Izaurralde RC, Gross KL, Robertson GP (2013) Sustainable
bioenergy production from marginal lands in the US Midwest. Nature 493:514–517
Gerlach W, Stoye J (2011) Taxonomic classification of metagenomic shotgun sequences with
CARMA3. Nucleic Acids Res 39:e91
Ghosh S, Chan CKK (2016) Analysis of RNA-Seq data using TopHat and Cufflinks. In: Plant
bioinformatics. Humana Press, New York, pp 339–361
Ghosh TS, Monzoorul Haque M, Mande SS (2010) DiScRIBinATE: a rapid method for accurate
taxonomic classification of metagenomic sequences. BMC Bioinform 7:S14
Ghosh UD, Saha C, Maiti M, Lahiri S, Ghosh S, Seal A et al (2014) Root associated iron oxidizing
bacteria increase phosphate nutrition and influence root to shoot partitioning of iron in tolerant
plant Typha angustifolia. Plant Soil. https://doi.org/10.1007/s11104-014-2085-x
References
Ferrer M, Ruiz A, Lanza F, Haange SB, Oberbach A, Till H, Bargiela R, Campoy C, Segura MT,
Richter M, von Bergen M, Seifert J, Suarez A (2013) Microbiota from the distal guts of lean
and obese adolescents exhibit partial functional redundancy besides clear differences in community structure. Environ Microbiol 15:211–226
Ferrigo D, Raiola A, Rasera R, Causin R (2014) Trichoderma harzianum seed treatment controls
Fusarium verticillioides colonization and fumonisin contamination in maize under field conditions. Crop Prot 65:51–56
Fic E, Kedracka-Krok S, Jankowska U, Pirog A, Dziedzicka-Wasylewska M (2010) Comparison
of protein precipitation methods for various rat brain structures prior to proteomic analysis.
Electrophoresis 31:3573–3579
Fierer N, Jackson JA, Vilgalys R, Jackson RB (2005) Assessment of soil microbialcommunity structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol
71:4117–4120
Figueroa-Lopez AM, Cordero-Ramirez JD, Martinez-Alvarez JC, Lopez-Meyer M, LizarragaSanchez GJ, Felix-Gastelum R, Castro-Martinez C, Maldonado-Mendoza IE (2016)
Rhizospheric bacteria of maize with potential for biocontrol of Fusarium verticillioides.
Springerplus 5:330
Filippo CD, Ramazzotti M, Fontana P, Cavalieri D (2012) Bioinformatic approaches for functional
annotation and pathway inference in metagenomics data. Brief Bioinform 13:696–710
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K,
Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M (2014) the protein families database.
Nucleic Acids Res 42:D222–D230
Fischer SG, Lerman LS (1979) Length-independent separation of DNA restriction fragments in
two dimensional gel electrophoresis. Cell 16:191–200
Food and Agriculture Organization of the United Nations (2013) Climate smart agriculture sourcebook. FAO Rome, Italy
Franzmann PD, Patterson BM, Power TR, Nichols PD, Davis GB (1996) Microbial biomass in
a shallow, urban aquifer contaminated with aromatic hydrocarbons: analysis of phospholipid
fatty acid content and composition. J Appl Bacteriol 80:617–625
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Izard J (2014) Relating
the metatranscriptome and metagenome of the human gut. Proc Natl Acad Sci 111:E2329–
E2338. https://doi.org/10.1073/pnas.1319284111
Friedman J, Alm EJ (2012) Inferring Correlation Networks from Genomic Survey Data. PLoS
Comput Biol 8:e1002687
Gao X, Gong Y, Huo Y, Han Q, Kang Z, Huang L (2015) Endophytic Bacillus subtilis strain
E1R-J is a promising biocontrol agent for wheat powdery mildew. Biomed Res Int. https://doi.
org/10.1155/2015/462645
Gawad C, Koh W, Quake SR (2016) Single-cell genome sequencing: current state of the science.
Nat Rev Genet 3:175–188
Gebreil AS, Abraham W-R (2016) Diversity and activity of bacterial biofilm communities growing
on hexachlorocyclohexane. Water Air Soil Pollut 227:295
Gelfand I, Sahajpal R, Zhang X, Izaurralde RC, Gross KL, Robertson GP (2013) Sustainable
bioenergy production from marginal lands in the US Midwest. Nature 493:514–517
Gerlach W, Stoye J (2011) Taxonomic classification of metagenomic shotgun sequences with
CARMA3. Nucleic Acids Res 39:e91
Ghosh S, Chan CKK (2016) Analysis of RNA-Seq data using TopHat and Cufflinks. In: Plant
bioinformatics. Humana Press, New York, pp 339–361
Ghosh TS, Monzoorul Haque M, Mande SS (2010) DiScRIBinATE: a rapid method for accurate
taxonomic classification of metagenomic sequences. BMC Bioinform 7:S14
Ghosh UD, Saha C, Maiti M, Lahiri S, Ghosh S, Seal A et al (2014) Root associated iron oxidizing
bacteria increase phosphate nutrition and influence root to shoot partitioning of iron in tolerant
plant Typha angustifolia. Plant Soil. https://doi.org/10.1007/s11104-014-2085-x
References