82
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P,
Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench
compatible with ARB. Appl Environ Microbiol 72:5069–5072
Dhillon V, Li X (2015) Single-cell genome sequencing for viral-host interactions. J Comput Sci
Syst Biol 8:160–165
Dhiman SS, Selvaraj C, Li J, Singh R, Zhao X, Kim D, Lee JK (2016) Phytoremediation of metalcontaminated soils by the hyperaccumulator canola (Brassica napus L.) and the use of its
biomass for ethanol production. Fuel 183:107–114
di Gregorio S, Barbafieri M, Lampis S, Sanangelantoni AM, Tassi E, Vallini G (2006) Combined
application of Triton X-100 and Sinorhizobium sp. Pb002 inoculum for the improvement of
lead phytoextraction by Brassica juncea in EDTA amended soil. Chemosphere 63:293–299
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009) TACOA: taxonomic
classification of environmental genomic fragments using a kernelized nearest neighbor
approach. BMC Bioinform 10:56
Drenovsky RE, Steenwerth KL, Jackson LE, Scow KM (2010) Land use and climatic factors
structure regional patterns in soil microbial communities. Glob Ecol Biogeogr 19:27–39
Drigo B, Van Veen JA, Kowalchuk GA (2009) Specific rhizosphere bacterial and fungal groups
respond differently to elevated atmospheric CO2. ISME J 3:1204–1217
Dröge J, McHardy AC (2012) Taxonomic binning of metagenome samples generated by nextgeneration sequencing technologies. Brief Bioinform 13:646–655
Dubey RK, Tripathi V, Singh N, Abhilash PC (2014) Phytoextraction and dissipation of lindane by
Spinacia oleracea L. Ecotoxicol Environ Saf 109:22–26
Dubey RK, Tripathi V, Abhilash PC (2015) Book Review: Principles of plant-microbe interactions: microbes for sustainable agriculture. Front Plant Sci. https://doi.org/10.3389/
fpls.2015.00986
Dubey PK, Singh GS, Abhilash PC (2016a) Agriculture in a changing climate. J Clean Prod
113:1046–1047
Dubey RK, Tripathi V, Dubey PK, Singh HB, Abhilash PC (2016b) Exploring rhizospheric interactions for agricultural sustainability: the need of integrative research on multi-trophic interactions. J Clean Prod 115:362–365
Dubey RK, Tripathi V, Edrisi SA, Bakshi M, Dubey PK, Singh A, Verma JP, Singh A, Sarma
BK, Raskhit A, Singh DP, Singh HB, Abhilash PC (2017) Role of plant growth promoting microorganisms in sustainable agriculture and environmental remediation. In: Singh
HB, Sharma B, Kesawani C (eds) Advances in PGPR research. CABI Press. https://doi.
org/10.1079/9781786390325.0000
Dumont MG, Murrell JC (2005) Stable isotope probing-linking microbial identity to function.
Nat Rev Microbiol 3:499–504
Edrisi SA, Abhilash PC (2016) Exploring marginal and degraded lands for biomass and bioenergy
production: an Indian scenario. Renew Sust Energ Rev 54:1537–1551
Edrisi SA, Dubey RK, Tripathi V, Bakshi M, Srivastava P, Jamil S, Abhilash PC (2015) Jatropha
curcas L.: a crucified plant waiting for resurgence. Renew Sust Energ Rev 41:855–862
Ekblom R, Wolf JBW (2014) A field guide to whole-genome sequencing, assembly and annotation. Evol Appl 7:1026–1042
El-Howeity MA, Asfour MM (2012) Response of some varieties of canola plant (Brassica napus
L.) cultivated in a newly reclaimed desert to plant growth promoting rhizobacteria and mineral
nitrogen fertilizer. Ann Agric Sci 57:129–136
Emmert-Buck MR et al (1996) Laser capture microdissection. Science 274:998–1001
Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J et al (2012) Microbial cooccurrence relationships in the human microbiome. PLoS Comput Biol 8:e1002606
Fernandes JP, Marisa C, Almeida R, Andreotti F, Barros L, Almeida T, Mucha P (2017) Response
of microbial communities colonizing salt marsh plants rhizosphere to copper oxide nanoparticles contamination and its implications for phytoremediation processes. Sci Total Environ
581:801–810
References
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P,
Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench
compatible with ARB. Appl Environ Microbiol 72:5069–5072
Dhillon V, Li X (2015) Single-cell genome sequencing for viral-host interactions. J Comput Sci
Syst Biol 8:160–165
Dhiman SS, Selvaraj C, Li J, Singh R, Zhao X, Kim D, Lee JK (2016) Phytoremediation of metalcontaminated soils by the hyperaccumulator canola (Brassica napus L.) and the use of its
biomass for ethanol production. Fuel 183:107–114
di Gregorio S, Barbafieri M, Lampis S, Sanangelantoni AM, Tassi E, Vallini G (2006) Combined
application of Triton X-100 and Sinorhizobium sp. Pb002 inoculum for the improvement of
lead phytoextraction by Brassica juncea in EDTA amended soil. Chemosphere 63:293–299
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009) TACOA: taxonomic
classification of environmental genomic fragments using a kernelized nearest neighbor
approach. BMC Bioinform 10:56
Drenovsky RE, Steenwerth KL, Jackson LE, Scow KM (2010) Land use and climatic factors
structure regional patterns in soil microbial communities. Glob Ecol Biogeogr 19:27–39
Drigo B, Van Veen JA, Kowalchuk GA (2009) Specific rhizosphere bacterial and fungal groups
respond differently to elevated atmospheric CO2. ISME J 3:1204–1217
Dröge J, McHardy AC (2012) Taxonomic binning of metagenome samples generated by nextgeneration sequencing technologies. Brief Bioinform 13:646–655
Dubey RK, Tripathi V, Singh N, Abhilash PC (2014) Phytoextraction and dissipation of lindane by
Spinacia oleracea L. Ecotoxicol Environ Saf 109:22–26
Dubey RK, Tripathi V, Abhilash PC (2015) Book Review: Principles of plant-microbe interactions: microbes for sustainable agriculture. Front Plant Sci. https://doi.org/10.3389/
fpls.2015.00986
Dubey PK, Singh GS, Abhilash PC (2016a) Agriculture in a changing climate. J Clean Prod
113:1046–1047
Dubey RK, Tripathi V, Dubey PK, Singh HB, Abhilash PC (2016b) Exploring rhizospheric interactions for agricultural sustainability: the need of integrative research on multi-trophic interactions. J Clean Prod 115:362–365
Dubey RK, Tripathi V, Edrisi SA, Bakshi M, Dubey PK, Singh A, Verma JP, Singh A, Sarma
BK, Raskhit A, Singh DP, Singh HB, Abhilash PC (2017) Role of plant growth promoting microorganisms in sustainable agriculture and environmental remediation. In: Singh
HB, Sharma B, Kesawani C (eds) Advances in PGPR research. CABI Press. https://doi.
org/10.1079/9781786390325.0000
Dumont MG, Murrell JC (2005) Stable isotope probing-linking microbial identity to function.
Nat Rev Microbiol 3:499–504
Edrisi SA, Abhilash PC (2016) Exploring marginal and degraded lands for biomass and bioenergy
production: an Indian scenario. Renew Sust Energ Rev 54:1537–1551
Edrisi SA, Dubey RK, Tripathi V, Bakshi M, Srivastava P, Jamil S, Abhilash PC (2015) Jatropha
curcas L.: a crucified plant waiting for resurgence. Renew Sust Energ Rev 41:855–862
Ekblom R, Wolf JBW (2014) A field guide to whole-genome sequencing, assembly and annotation. Evol Appl 7:1026–1042
El-Howeity MA, Asfour MM (2012) Response of some varieties of canola plant (Brassica napus
L.) cultivated in a newly reclaimed desert to plant growth promoting rhizobacteria and mineral
nitrogen fertilizer. Ann Agric Sci 57:129–136
Emmert-Buck MR et al (1996) Laser capture microdissection. Science 274:998–1001
Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J et al (2012) Microbial cooccurrence relationships in the human microbiome. PLoS Comput Biol 8:e1002606
Fernandes JP, Marisa C, Almeida R, Andreotti F, Barros L, Almeida T, Mucha P (2017) Response
of microbial communities colonizing salt marsh plants rhizosphere to copper oxide nanoparticles contamination and its implications for phytoremediation processes. Sci Total Environ
581:801–810
References