84
Giagnoni L, Magherini F, Landi L, Taghavi S, van der Lelie D, Puglia M, Bianchi L, Bini L,
Nannipieri P, Renella G, Modesti A (2012) Soil solid phases effects on the proteomic analysis
of Cupriavidus metallidurans CH34. Biol Fertil Soils 48:425–433
Gilbert JA, Meyer F, Bailey MJ (2011) The future of microbial metagenomics (or is ignorance
bliss?). ISME J 5:777–779
Gilbert JA, Jansson JK, Knight R (2014) The earth microbiome project: successes and aspirations.
BMC Biol 12(1):69. https://doi.org/10.1186/s12915-014-0069-1
Glass EM, Wilkening J, Wilke A, Antonopoulos D, Meyer F (2010) Using the metagenomics
RAST server (MG-RAST) for analyzing shotgun metagenomes. Cold Spring Harb Protoc.
https://doi.org/10.1101/pdb.prot5368
Glick BR (2012) Plant growth-promoting bacteria: mechanisms and applications. Scientifica
2012:963401, 15 pp. https://doi.org/10.6064/2012/963401
Glick BR (2014) Bacteria with ACC deaminase can promote plant growth and help to feed the
world. Microbiol Res 169:30–39
Gole J et al (2013) Massively parallel polymerase cloning and genome sequencing of single cells
using nanoliter microwells. Nat Biotechnol 31:1126–1132
Goll J, Rusch DB, Tanenbaum DM, Thiagarajan M, Li K, Methé BA, Yooseph S (2010)
METAREP: JCVI metagenomics reports-an open source tool for high-performance comparative metagenomics. Bioinformatics 26:2631–2632
Gori F, Folino G, Jetten MS, Marchiori E (2011) MTR: taxonomic annotation of short
metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics 27:196–203
Gosalbes MJ, Durbán A, Pignatelli M, Abellan JJ, Jiménez-Hernández N, Pérez-Cobas AE,
Moya A (2011) Metatranscriptomic approach to analyze the functional human gut microbiota.
PLoS One 6:e17447. https://doi.org/10.1371/journal.pone.0017447
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Chen Z (2011) Full-length
transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol
29:644–652
Graham-Rowe D (2011) Beyond food versus fuel. Nature 474:S6–S8
Gruber-Dorninger C, Pester M, Kitzinger K, Savio DF, Loy A, Rattei T, Daims H (2015) Functionally
relevant diversity of closely related Nitrospira in activated sludge. ISME J 9:643–655
Guangyin Z, Xueqin Lu, Takuro K, Gopalakrishnan K, Kaiqin X (2016) Promoted electromethanosynthesis in a two-chamber microbial electrolysis cells (MECs) containing a hybrid biocathode covered with graphite felt (GF). Chem Eng J 284:1146–1155
Guo J, Cole JR, Zhang Q, Brown CT, Tiedje JM (2016) Microbial community analysis with ribosomal gene fragments from shotgun metagenomes. Appl Environ Microbiol 82:157–166
Gygi SP, Corthals GL, Zhang Y, Rochon Y, Aebersol R (2000) Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc Natl Acad Sci U S A
97:9390–9395
Haft DH, Selengut JD, White O (2003) The TIGRFAMs database of protein families. Nucleic
Acids Res 1:371–373
Ham RG (1965) Clonal growth of mammalian cells in a chemically defined, synthetic medium.
Proc Natl Acad Sci U S A 53:288–293
Handelsman J (2004) The ecologist’s field guide to sequence-based identification of biodiversity.
Microbiol Mol Biol Rev 68:669–685
Hanning I, Diaz-Sanchez S (2015) The functionality of the gastrointestinal microbiome in nonhuman animals. Microbiome 3:51
Harfouche A, Meilan R, Altman A (2011) Tree genetic engineering and applications to sustainable
forestry and biomass production. Trends Biotechnol 29:9–17
Harrington ED, Arumugam M, Raes J, Bork P, Relman DA (2010) SmashCell: a software
framework for the analysis of single-cell amplified genome sequences. Bioinformatics
26:2979–2980
Hayashi K (1991) PCR-SSCP: a simple and sensitive method for detection of mutations in the
genomic DNA. PCR Methods Appl 1:34–38
References
Giagnoni L, Magherini F, Landi L, Taghavi S, van der Lelie D, Puglia M, Bianchi L, Bini L,
Nannipieri P, Renella G, Modesti A (2012) Soil solid phases effects on the proteomic analysis
of Cupriavidus metallidurans CH34. Biol Fertil Soils 48:425–433
Gilbert JA, Meyer F, Bailey MJ (2011) The future of microbial metagenomics (or is ignorance
bliss?). ISME J 5:777–779
Gilbert JA, Jansson JK, Knight R (2014) The earth microbiome project: successes and aspirations.
BMC Biol 12(1):69. https://doi.org/10.1186/s12915-014-0069-1
Glass EM, Wilkening J, Wilke A, Antonopoulos D, Meyer F (2010) Using the metagenomics
RAST server (MG-RAST) for analyzing shotgun metagenomes. Cold Spring Harb Protoc.
https://doi.org/10.1101/pdb.prot5368
Glick BR (2012) Plant growth-promoting bacteria: mechanisms and applications. Scientifica
2012:963401, 15 pp. https://doi.org/10.6064/2012/963401
Glick BR (2014) Bacteria with ACC deaminase can promote plant growth and help to feed the
world. Microbiol Res 169:30–39
Gole J et al (2013) Massively parallel polymerase cloning and genome sequencing of single cells
using nanoliter microwells. Nat Biotechnol 31:1126–1132
Goll J, Rusch DB, Tanenbaum DM, Thiagarajan M, Li K, Methé BA, Yooseph S (2010)
METAREP: JCVI metagenomics reports-an open source tool for high-performance comparative metagenomics. Bioinformatics 26:2631–2632
Gori F, Folino G, Jetten MS, Marchiori E (2011) MTR: taxonomic annotation of short
metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics 27:196–203
Gosalbes MJ, Durbán A, Pignatelli M, Abellan JJ, Jiménez-Hernández N, Pérez-Cobas AE,
Moya A (2011) Metatranscriptomic approach to analyze the functional human gut microbiota.
PLoS One 6:e17447. https://doi.org/10.1371/journal.pone.0017447
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Chen Z (2011) Full-length
transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol
29:644–652
Graham-Rowe D (2011) Beyond food versus fuel. Nature 474:S6–S8
Gruber-Dorninger C, Pester M, Kitzinger K, Savio DF, Loy A, Rattei T, Daims H (2015) Functionally
relevant diversity of closely related Nitrospira in activated sludge. ISME J 9:643–655
Guangyin Z, Xueqin Lu, Takuro K, Gopalakrishnan K, Kaiqin X (2016) Promoted electromethanosynthesis in a two-chamber microbial electrolysis cells (MECs) containing a hybrid biocathode covered with graphite felt (GF). Chem Eng J 284:1146–1155
Guo J, Cole JR, Zhang Q, Brown CT, Tiedje JM (2016) Microbial community analysis with ribosomal gene fragments from shotgun metagenomes. Appl Environ Microbiol 82:157–166
Gygi SP, Corthals GL, Zhang Y, Rochon Y, Aebersol R (2000) Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc Natl Acad Sci U S A
97:9390–9395
Haft DH, Selengut JD, White O (2003) The TIGRFAMs database of protein families. Nucleic
Acids Res 1:371–373
Ham RG (1965) Clonal growth of mammalian cells in a chemically defined, synthetic medium.
Proc Natl Acad Sci U S A 53:288–293
Handelsman J (2004) The ecologist’s field guide to sequence-based identification of biodiversity.
Microbiol Mol Biol Rev 68:669–685
Hanning I, Diaz-Sanchez S (2015) The functionality of the gastrointestinal microbiome in nonhuman animals. Microbiome 3:51
Harfouche A, Meilan R, Altman A (2011) Tree genetic engineering and applications to sustainable
forestry and biomass production. Trends Biotechnol 29:9–17
Harrington ED, Arumugam M, Raes J, Bork P, Relman DA (2010) SmashCell: a software
framework for the analysis of single-cell amplified genome sequences. Bioinformatics
26:2979–2980
Hayashi K (1991) PCR-SSCP: a simple and sensitive method for detection of mutations in the
genomic DNA. PCR Methods Appl 1:34–38
References