12 Nonlinear Label-Free Super-Resolution Microscopy Using Structured Illumination
309
32. E. Mudry, K. Belkebir, J. Girard, J. Savatier, E. Le Moal, C. Nicoletti, M. Allain, A. Sentenac,
Structured illumination microscopy using unknown speckle patterns. Nat. Photonics 6, 312–
315 (2012)
33. A. Jost, E. Tolstik, P. Feldmann, K. Wicker, A. Sentenac, R. Heintzmann, Optical sectioning
and high resolution in single-slice structured illumination microscopy by thick slice blind-SIM
reconstruction. PLoS One 10(7), 1–10 (2015)
34. G.M. Hagen, P. Kížek, T. Lukeš, M. Ovesný, K. Fliegel, SIMToolbox: a MATLAB toolbox
for structured illumination fluorescence microscopy. Bioinformatics 32(2), 318–320 (2015)
35. G. Ball, J. Demmerle, R. Kaufmann, I. Davis, I.M. Dobbie, L. Schermelleh, SIMcheck:
a toolbox for successful super-resolution structured illumination microscopy. Sci. Rep. 5,
15915 (2015)
36. M. Müller, V. Mönkemöller, S. Hennig, W. Hübner, T. Huser, Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ. Nat. Commun. 7,
10980 (2016)
37. J. Lu, W. Min, J.-A. Conchello, X.S. Xie, J.W. Lichtman, J.-A. Conchello, X.S. Xie, J.W.
Lichtman, Super-resolution laser scanning microscopy through spatiotemporal modulation.
Nano Lett. 9(11), 3883–3889 (2009)
38. B.E. Urban, J. Yi, S. Chen, B. Dong, Y. Zhu, S.H. Devries, V. Backman, H.F. Zhang, Superresolution two-photon microscopy via scanning patterned illumination. Phys. Rev. E 91(4),
042703 (2015)
39. O. Mandula, M. Kielhorn, K. Wicker, G. Krampert, I. Kleppe, R. Heintzmann, Line scanstructured illumination microscopy super-resolution imaging in thick fluorescent samples.
Opt. Express 20(22), 24167–24174 (2012)
40. C.B. Müller, J. Enderlein, Image scanning microscopy. Phys. Rev. Lett. 104(19), 198101
(2010)
41. S. Roth, C.J.R. Sheppard, K. Wicker, R. Heintzmann, Optical photon reassignment microscopy
(OPRA). Opt. Nanoscopy 2(1), 5 (2013)
42. C. Kuang, Y. Ma, R. Zhou, G. Zheng, Y. Fang, Y. Xu, X. Liu, P.T. So, Virtual k-space
modulation optical microscopy. Phys. Rev. Lett. 117(2), 028102 (2016)
43. C.L. Evans, E.O. Potma, M. Puoris’haag, D. Cote, C.P. Lin, X.S. Xie, Chemical imaging of
tissue in vivo with video-rate coherent anti-Stokes Raman scattering microscopy. Proc. Natl.
Acad. Sci. 102(46), 16807–16812 (2005)
44. J.N. Gannaway, C.J.R. Sheppard, Second-harmonic imaging in the scanning optical microscope. Opt. Quantum Electron. 10(5), 435–439 (1978)
45. D. Yelin, Y. Silberberg, Laser scanning third-harmonic-generation microscopy in biology.
Opt. Express 5(8), 169–175 (1999)
46. J.A. Squier, K.R. Wilson, Third harmonic generation microscopy. Opt. Express 3(9), 315–324
(1998)
47. C.L. Evans, X.S. Xie, Coherent anti-Stokes Raman scattering microscopy: chemical imaging
for biology and medicine. Annu. Rev. Anal. Chem. 1, 883–909 (2008)
48. C. Macias-Romero, M.E.P. Didier, P. Jourdain, P. Marquet, P. Magistretti, O.B. Tarun, V.
Zubkovs, A. Radenovic, S. Roke, High throughput second harmonic imaging for label-free
biological applications. Opt. Express 22(25), 31102–31112 (2014)
49. W.R. Zipfel, R.M. Williams, W.W. Webb, Nonlinear magic: multiphoton microscopy in the
biosciences. Nat. Biotechnol. 21(11), 1369–1377 (2003)
50. F. Helmchen, W. Denk, Deep tissue two-photon microscopy. Nat. Methods 2(12), 932–940
(2005)
51. D. Kobat, N.G. Horton, C. Xu, In vivo two-photon microscopy to 1.6-mm depth in mouse
cortex. J. Biomed. Opt. 16(10), 106014 (2011)
52. N.G. Horton, K. Wang, D. Kobat, C.G. Clark, F.W. Wise, C.B. Schaffer, C. Xu, In vivo threephoton microscopy of subcortical structures within an intact mouse brain. Nat. Photonics 7(3),
205 (2013)
53. J. Squier, M. Müller, High resolution nonlinear microscopy: a review of sources and methods
for achieving optimal imaging. Rev. Sci. Instrum. 72(7), 2855–2867 (2001)
309
32. E. Mudry, K. Belkebir, J. Girard, J. Savatier, E. Le Moal, C. Nicoletti, M. Allain, A. Sentenac,
Structured illumination microscopy using unknown speckle patterns. Nat. Photonics 6, 312–
315 (2012)
33. A. Jost, E. Tolstik, P. Feldmann, K. Wicker, A. Sentenac, R. Heintzmann, Optical sectioning
and high resolution in single-slice structured illumination microscopy by thick slice blind-SIM
reconstruction. PLoS One 10(7), 1–10 (2015)
34. G.M. Hagen, P. Kížek, T. Lukeš, M. Ovesný, K. Fliegel, SIMToolbox: a MATLAB toolbox
for structured illumination fluorescence microscopy. Bioinformatics 32(2), 318–320 (2015)
35. G. Ball, J. Demmerle, R. Kaufmann, I. Davis, I.M. Dobbie, L. Schermelleh, SIMcheck:
a toolbox for successful super-resolution structured illumination microscopy. Sci. Rep. 5,
15915 (2015)
36. M. Müller, V. Mönkemöller, S. Hennig, W. Hübner, T. Huser, Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ. Nat. Commun. 7,
10980 (2016)
37. J. Lu, W. Min, J.-A. Conchello, X.S. Xie, J.W. Lichtman, J.-A. Conchello, X.S. Xie, J.W.
Lichtman, Super-resolution laser scanning microscopy through spatiotemporal modulation.
Nano Lett. 9(11), 3883–3889 (2009)
38. B.E. Urban, J. Yi, S. Chen, B. Dong, Y. Zhu, S.H. Devries, V. Backman, H.F. Zhang, Superresolution two-photon microscopy via scanning patterned illumination. Phys. Rev. E 91(4),
042703 (2015)
39. O. Mandula, M. Kielhorn, K. Wicker, G. Krampert, I. Kleppe, R. Heintzmann, Line scanstructured illumination microscopy super-resolution imaging in thick fluorescent samples.
Opt. Express 20(22), 24167–24174 (2012)
40. C.B. Müller, J. Enderlein, Image scanning microscopy. Phys. Rev. Lett. 104(19), 198101
(2010)
41. S. Roth, C.J.R. Sheppard, K. Wicker, R. Heintzmann, Optical photon reassignment microscopy
(OPRA). Opt. Nanoscopy 2(1), 5 (2013)
42. C. Kuang, Y. Ma, R. Zhou, G. Zheng, Y. Fang, Y. Xu, X. Liu, P.T. So, Virtual k-space
modulation optical microscopy. Phys. Rev. Lett. 117(2), 028102 (2016)
43. C.L. Evans, E.O. Potma, M. Puoris’haag, D. Cote, C.P. Lin, X.S. Xie, Chemical imaging of
tissue in vivo with video-rate coherent anti-Stokes Raman scattering microscopy. Proc. Natl.
Acad. Sci. 102(46), 16807–16812 (2005)
44. J.N. Gannaway, C.J.R. Sheppard, Second-harmonic imaging in the scanning optical microscope. Opt. Quantum Electron. 10(5), 435–439 (1978)
45. D. Yelin, Y. Silberberg, Laser scanning third-harmonic-generation microscopy in biology.
Opt. Express 5(8), 169–175 (1999)
46. J.A. Squier, K.R. Wilson, Third harmonic generation microscopy. Opt. Express 3(9), 315–324
(1998)
47. C.L. Evans, X.S. Xie, Coherent anti-Stokes Raman scattering microscopy: chemical imaging
for biology and medicine. Annu. Rev. Anal. Chem. 1, 883–909 (2008)
48. C. Macias-Romero, M.E.P. Didier, P. Jourdain, P. Marquet, P. Magistretti, O.B. Tarun, V.
Zubkovs, A. Radenovic, S. Roke, High throughput second harmonic imaging for label-free
biological applications. Opt. Express 22(25), 31102–31112 (2014)
49. W.R. Zipfel, R.M. Williams, W.W. Webb, Nonlinear magic: multiphoton microscopy in the
biosciences. Nat. Biotechnol. 21(11), 1369–1377 (2003)
50. F. Helmchen, W. Denk, Deep tissue two-photon microscopy. Nat. Methods 2(12), 932–940
(2005)
51. D. Kobat, N.G. Horton, C. Xu, In vivo two-photon microscopy to 1.6-mm depth in mouse
cortex. J. Biomed. Opt. 16(10), 106014 (2011)
52. N.G. Horton, K. Wang, D. Kobat, C.G. Clark, F.W. Wise, C.B. Schaffer, C. Xu, In vivo threephoton microscopy of subcortical structures within an intact mouse brain. Nat. Photonics 7(3),
205 (2013)
53. J. Squier, M. Müller, High resolution nonlinear microscopy: a review of sources and methods
for achieving optimal imaging. Rev. Sci. Instrum. 72(7), 2855–2867 (2001)