Collens A, Kelley E, Katz LA (2019) The concept of the hologenome, an epigenetic phenomenon,
challenges aspects of the modern evolutionary synthesis. J Exp Zool B Mol Dev Evol
332:349–355. https://doi.org/10.1002/jez.b.22915
Destoumieux-Garzón D, Duperthuy M, Vanhove AS, Schmitt P, Wai SN, Shafer WM (2014)
Resistance to antimicrobial peptides in vibrios. Antibiotics 3:540–563. https://doi.org/10.3390/
antibiotics3040540
Destoumieux-Garzón D, Canesi L, Oyanedel D, Travers MA, Charrière GM, Pruzzo C, Vezzulli L
(2020) Vibrio–bivalve interactions in health and disease. Environ Microbiol 22:4323. https://
doi.org/10.1111/1462-2920.15055
Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C, Orlando L, Medigue C,
Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V, Paillard C (2018)
Vibrio tapetis displays an original type IV secretion system in strains pathogenic for bivalve
molluscs. Front Microbiol 9:227. https://doi.org/10.3389/fmicb.2018.00227
Douglas AE (2010) The symbiotic habit. Princeton University Press, Princeton, NJ, p 214
Duperron S, Sibuet M, MacGregor BJ, Kuypers MMM, Fisher CR, Dubilier N (2007) Diversity,
relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus
mussel species from cold seeps in the Gulf of Mexico. Environ Microbiol 9:1423–1438. https://
doi.org/10.1111/j.1462-2920.2007.01259.x
Duperthuy M, Schmitt P, Garzón E, Caro A, Rosa RD, Le Roux F, Lautrédou-Audouy N, Got P,
Romestand B, de Lorgeril J, Kieffer-Jaquinod S, Bachère E, Destoumieux-Garzón D (2011) Use
of OmpU porins for attachment and invasion of Crassostrea gigas immune cells by the oyster
pathogen Vibrio splendidus. Proc Natl Acad Sci U S A 108:2993–2998. https://doi.org/10.1073/
pnas.1015326108
Fujiwara Y, Takai K, Uematsu K, Tsuchida S, Hunt JC, Hashimoto J (2000) Phylogenetic
characterization of endosymbionts in three hydrothermal vent mussels: influence on host
distributions. Mar Ecol Prog Ser 208:147–155. https://doi.org/10.3354/meps208147
Gerdol M, Gomez-Chiarri M, Castillo MG, Figueras A, Fiorito G, Moreira R, Novoa B,
Pallavicini A, Ponte G, Roumbedakis K, Venier P, Vasta GR (2018) Immunity in molluscs:
recognition and effector mechanisms, with a focus on bivalvia. In: Cooper EL (ed) Advances in
comparative immunology. Springer International Publishing, Cham, Switzerland, pp 225–341
Goudenège D, Travers MA, Lemire A, Petton B, Haffner P, Labreuche Y, Tourbiez D, Mangenot S,
Calteau A, Mazel D, Nicolas JL, Jacq A, Le Roux F (2015) A single regulatory gene is sufficient
to alter Vibrio aestuarianus pathogenicity in oysters. Environ Microbiol 17:4189–4199. https://
doi.org/10.1111/1462-2920.12699
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF (2008a) Resource partitioning and
sympatric differentiation among closely related bacterioplankton. Science 320:1081–1085.
https://doi.org/10.1126/science.1157890
Hunt DE, Gevers D, Vahora NM, Polz MF (2008b) Conservation of the chitin utilization pathway in
the Vibrionaceae. Appl Environ Microbiol 74:44–51. https://doi.org/10.1128/AEM.01412-07
Jones BW, Nishiguchi MK (2004) Counterillumination in the Hawaiian bobtail squid, Euprymna
scolopes berry (Mollusca: Cephalopoda). Mar Biol 144:1151–1155. https://doi.org/10.1007/
s00227-003-1285-3
Kellermann MY, Schubotz F, Elvert M, Lipp JS, Birgel D, Prieto-Mollar X, Dubilier N, Hinrichs
KU (2012) Symbiont–host relationships in chemosynthetic mussels: a comprehensive lipid
biomarker study. Org Geochem 43:112–124. https://doi.org/10.1016/j.orggeochem.2011.10.
005
Koch EJ, Miyashiro T, McFall-Ngai MJ, Ruby EG (2013) Features governing symbiont persistence
in the squid-vibrio association. Mol Ecol 23:1624–1634. https://doi.org/10.1111/mec.12474
König S, Gros O, Heiden SE, Hinzke T, Thurmer A, Poehlein A, Meyer S, Vatin M, Mbéguié-AMbéguié D, Tocny J, Ponnudurai R, Becher R, Schweder T, Markert S (2016) Nitrogen fixation
in a chemoautotrophic lucinid symbiosis. Nat Microbiol 2:16193. https://doi.org/10.1038/
nmicrobiol.2016.193
24 Coevolution of Molluscs and Their Microbes
523
challenges aspects of the modern evolutionary synthesis. J Exp Zool B Mol Dev Evol
332:349–355. https://doi.org/10.1002/jez.b.22915
Destoumieux-Garzón D, Duperthuy M, Vanhove AS, Schmitt P, Wai SN, Shafer WM (2014)
Resistance to antimicrobial peptides in vibrios. Antibiotics 3:540–563. https://doi.org/10.3390/
antibiotics3040540
Destoumieux-Garzón D, Canesi L, Oyanedel D, Travers MA, Charrière GM, Pruzzo C, Vezzulli L
(2020) Vibrio–bivalve interactions in health and disease. Environ Microbiol 22:4323. https://
doi.org/10.1111/1462-2920.15055
Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C, Orlando L, Medigue C,
Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V, Paillard C (2018)
Vibrio tapetis displays an original type IV secretion system in strains pathogenic for bivalve
molluscs. Front Microbiol 9:227. https://doi.org/10.3389/fmicb.2018.00227
Douglas AE (2010) The symbiotic habit. Princeton University Press, Princeton, NJ, p 214
Duperron S, Sibuet M, MacGregor BJ, Kuypers MMM, Fisher CR, Dubilier N (2007) Diversity,
relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus
mussel species from cold seeps in the Gulf of Mexico. Environ Microbiol 9:1423–1438. https://
doi.org/10.1111/j.1462-2920.2007.01259.x
Duperthuy M, Schmitt P, Garzón E, Caro A, Rosa RD, Le Roux F, Lautrédou-Audouy N, Got P,
Romestand B, de Lorgeril J, Kieffer-Jaquinod S, Bachère E, Destoumieux-Garzón D (2011) Use
of OmpU porins for attachment and invasion of Crassostrea gigas immune cells by the oyster
pathogen Vibrio splendidus. Proc Natl Acad Sci U S A 108:2993–2998. https://doi.org/10.1073/
pnas.1015326108
Fujiwara Y, Takai K, Uematsu K, Tsuchida S, Hunt JC, Hashimoto J (2000) Phylogenetic
characterization of endosymbionts in three hydrothermal vent mussels: influence on host
distributions. Mar Ecol Prog Ser 208:147–155. https://doi.org/10.3354/meps208147
Gerdol M, Gomez-Chiarri M, Castillo MG, Figueras A, Fiorito G, Moreira R, Novoa B,
Pallavicini A, Ponte G, Roumbedakis K, Venier P, Vasta GR (2018) Immunity in molluscs:
recognition and effector mechanisms, with a focus on bivalvia. In: Cooper EL (ed) Advances in
comparative immunology. Springer International Publishing, Cham, Switzerland, pp 225–341
Goudenège D, Travers MA, Lemire A, Petton B, Haffner P, Labreuche Y, Tourbiez D, Mangenot S,
Calteau A, Mazel D, Nicolas JL, Jacq A, Le Roux F (2015) A single regulatory gene is sufficient
to alter Vibrio aestuarianus pathogenicity in oysters. Environ Microbiol 17:4189–4199. https://
doi.org/10.1111/1462-2920.12699
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF (2008a) Resource partitioning and
sympatric differentiation among closely related bacterioplankton. Science 320:1081–1085.
https://doi.org/10.1126/science.1157890
Hunt DE, Gevers D, Vahora NM, Polz MF (2008b) Conservation of the chitin utilization pathway in
the Vibrionaceae. Appl Environ Microbiol 74:44–51. https://doi.org/10.1128/AEM.01412-07
Jones BW, Nishiguchi MK (2004) Counterillumination in the Hawaiian bobtail squid, Euprymna
scolopes berry (Mollusca: Cephalopoda). Mar Biol 144:1151–1155. https://doi.org/10.1007/
s00227-003-1285-3
Kellermann MY, Schubotz F, Elvert M, Lipp JS, Birgel D, Prieto-Mollar X, Dubilier N, Hinrichs
KU (2012) Symbiont–host relationships in chemosynthetic mussels: a comprehensive lipid
biomarker study. Org Geochem 43:112–124. https://doi.org/10.1016/j.orggeochem.2011.10.
005
Koch EJ, Miyashiro T, McFall-Ngai MJ, Ruby EG (2013) Features governing symbiont persistence
in the squid-vibrio association. Mol Ecol 23:1624–1634. https://doi.org/10.1111/mec.12474
König S, Gros O, Heiden SE, Hinzke T, Thurmer A, Poehlein A, Meyer S, Vatin M, Mbéguié-AMbéguié D, Tocny J, Ponnudurai R, Becher R, Schweder T, Markert S (2016) Nitrogen fixation
in a chemoautotrophic lucinid symbiosis. Nat Microbiol 2:16193. https://doi.org/10.1038/
nmicrobiol.2016.193
24 Coevolution of Molluscs and Their Microbes
523