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Beerenwinkel N, Ludington WB (2018) Microbiome interactions shape host fitness. Proc Natl
Acad Sci USA 115:E11951–E11960
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Ecol 86:902–910
Grover M, Ali SZ, Sandhya V, Rasul A, Venkateswarlu B (2011) Role of microorganisms in
adaptation of agriculture crops to abiotic stresses. World J Microbiol Biotechnol 27:1231–1240
Gruber N, Galloway JN (2008) An Earth-system perspective of the global nitrogen cycle. Nature
451:293–296
Guillemot N, Kulbicki M, Chabanet P, Vigliola L (2011) Functional redundancy patterns reveal
non-random assembly rules in a species-rich marine assemblage. PLoS One 6:e26735
Hacquard S, Garrido-Oter R, González A, Spaepen S, Ackermann G, Lebeis S, McHardy AC,
Dangl JL, Knight R, Ley R, Schulze-Lefert P (2015) Microbiota and host nutrition across plant
and animal kingdoms. Cell Host Microbe 17:603–616
Hadfield MG (2010) Biofilms and marine invertebrate larvae: what bacteria produce that larvae use
to choose settlement sites. Annu Rev Mar Sci 3:453–470
Hammami R, Fernandez B, Lacroix C, Fliss I (2013) Anti-infective properties of bacteriocins: an
update. Cell Mol Life Sci 70:2947–2967
Hammer TJ, Janzen DH, Hallwachs W, Jaffe SP, Fierer N (2017) Caterpillars lack a resident gut
microbiome. Proc Natl Acad Sci USA 114:9641–9646
Hartley SE, Eschen R, Horwood JM, Gange AC, Hill EM (2015) Infection by a foliar endophyte
elicits novel arabidopside-based plant defence reactions in its host, Cirsium arvense. New Phytol
205:816–827
Henry LP, Bruijning M, Forsberg SKG, Ayroles JF (2019) Can the microbiome influence host
evolutionary trajectories? bioRxiv. https://doi.org/10.1101/700237
Henson MA, Phalak P (2017) Byproducts cross feeding and community stability in an In Silico
Biofilm model of the gut microbiome. Processes 5:1–13
Hickey RJ, Zhou X, Pierson JD, Ravel J, Forney LJ (2012) Understanding vaginal microbiome
complexity from an ecological perspective. Transl Res 160:267–282
Hill CJ, Lynch DB, Murphy K, Ulaszewska M, Jeffery IB, O’Shea CA, Watkins C, Dempsey E,
Mattivi F, Tuohy K, Ross RP, Ryan CA, O’Toole PW, Stanton C (2017) Evolution of gut
microbiota composition from birth to 24 weeks in the INFANTMET Cohort. Microbiome 5:4
Hongoh Y (2010) Diversity and genomes of uncultured microbial symbionts in the termite gut.
Biosci Biotechnol Biochem 74:1145–1151
Hooper DU, Dukes JS (2004) Overyielding among plant functional groups in a long-term experiment. Ecol Lett 7:95–105
Hooper DU, Chapin FS, Ewel JJ, Hector A, Inchausti P, Lavorel S, Lawton JH, Lodge DM,
Loreau M, Naeem S, Schmid B, Setälä H, Symstad AJ, Vandermeer J, Wardle DA (2005)
Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecol
Monogr 75:3–35
Hooper LV, Littman DR, Macpherson AJ (2012) Interactions between the microbiota and the
immune system. Science 336:1268–1273
Huang Y, Callahan S, Hadfield MG (2012) Recruitment in the sea: bacterial genes required for
inducing larval settlement in a polychaete worm. Sci Rep 2:228
Hubbard M, Germida J, Vujanovic V (2012) Fungal endophytes improve wheat seed germination
under heat and drought stress. Botany 90:137–149
Hunter P (2018) The revival of the extended phenotype. EMBO Rep 19:e46477
Hurst CJ (2016) Towards a unified understanding of evolution, habitat and niche. In Hurst CJ
(ed) Their world: a diversity of microbial environments. Advances in environmental microbiology, vol 1, Springer, Cham, pp 1–33
Huttenhower C, The Human Microbiome Project Consortium (2012) Structure, function and
diversity of the healthy human microbiome. Nature 486:207–214
320
C. Cuellar-Gempeler
Beerenwinkel N, Ludington WB (2018) Microbiome interactions shape host fitness. Proc Natl
Acad Sci USA 115:E11951–E11960
Grime JP (1998) Benefits of plant diversity to ecosystems: immediate, filter and founder effects. J
Ecol 86:902–910
Grover M, Ali SZ, Sandhya V, Rasul A, Venkateswarlu B (2011) Role of microorganisms in
adaptation of agriculture crops to abiotic stresses. World J Microbiol Biotechnol 27:1231–1240
Gruber N, Galloway JN (2008) An Earth-system perspective of the global nitrogen cycle. Nature
451:293–296
Guillemot N, Kulbicki M, Chabanet P, Vigliola L (2011) Functional redundancy patterns reveal
non-random assembly rules in a species-rich marine assemblage. PLoS One 6:e26735
Hacquard S, Garrido-Oter R, González A, Spaepen S, Ackermann G, Lebeis S, McHardy AC,
Dangl JL, Knight R, Ley R, Schulze-Lefert P (2015) Microbiota and host nutrition across plant
and animal kingdoms. Cell Host Microbe 17:603–616
Hadfield MG (2010) Biofilms and marine invertebrate larvae: what bacteria produce that larvae use
to choose settlement sites. Annu Rev Mar Sci 3:453–470
Hammami R, Fernandez B, Lacroix C, Fliss I (2013) Anti-infective properties of bacteriocins: an
update. Cell Mol Life Sci 70:2947–2967
Hammer TJ, Janzen DH, Hallwachs W, Jaffe SP, Fierer N (2017) Caterpillars lack a resident gut
microbiome. Proc Natl Acad Sci USA 114:9641–9646
Hartley SE, Eschen R, Horwood JM, Gange AC, Hill EM (2015) Infection by a foliar endophyte
elicits novel arabidopside-based plant defence reactions in its host, Cirsium arvense. New Phytol
205:816–827
Henry LP, Bruijning M, Forsberg SKG, Ayroles JF (2019) Can the microbiome influence host
evolutionary trajectories? bioRxiv. https://doi.org/10.1101/700237
Henson MA, Phalak P (2017) Byproducts cross feeding and community stability in an In Silico
Biofilm model of the gut microbiome. Processes 5:1–13
Hickey RJ, Zhou X, Pierson JD, Ravel J, Forney LJ (2012) Understanding vaginal microbiome
complexity from an ecological perspective. Transl Res 160:267–282
Hill CJ, Lynch DB, Murphy K, Ulaszewska M, Jeffery IB, O’Shea CA, Watkins C, Dempsey E,
Mattivi F, Tuohy K, Ross RP, Ryan CA, O’Toole PW, Stanton C (2017) Evolution of gut
microbiota composition from birth to 24 weeks in the INFANTMET Cohort. Microbiome 5:4
Hongoh Y (2010) Diversity and genomes of uncultured microbial symbionts in the termite gut.
Biosci Biotechnol Biochem 74:1145–1151
Hooper DU, Dukes JS (2004) Overyielding among plant functional groups in a long-term experiment. Ecol Lett 7:95–105
Hooper DU, Chapin FS, Ewel JJ, Hector A, Inchausti P, Lavorel S, Lawton JH, Lodge DM,
Loreau M, Naeem S, Schmid B, Setälä H, Symstad AJ, Vandermeer J, Wardle DA (2005)
Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecol
Monogr 75:3–35
Hooper LV, Littman DR, Macpherson AJ (2012) Interactions between the microbiota and the
immune system. Science 336:1268–1273
Huang Y, Callahan S, Hadfield MG (2012) Recruitment in the sea: bacterial genes required for
inducing larval settlement in a polychaete worm. Sci Rep 2:228
Hubbard M, Germida J, Vujanovic V (2012) Fungal endophytes improve wheat seed germination
under heat and drought stress. Botany 90:137–149
Hunter P (2018) The revival of the extended phenotype. EMBO Rep 19:e46477
Hurst CJ (2016) Towards a unified understanding of evolution, habitat and niche. In Hurst CJ
(ed) Their world: a diversity of microbial environments. Advances in environmental microbiology, vol 1, Springer, Cham, pp 1–33
Huttenhower C, The Human Microbiome Project Consortium (2012) Structure, function and
diversity of the healthy human microbiome. Nature 486:207–214
320
C. Cuellar-Gempeler