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Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive Earth’s biogeochemical cycles. Science 320:1034–1039
Ferlian O, Cesarz S, Craven D, Hines J, Barry KE, Bruelheide H, Buscot F, Haider S, Heklau H,
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Sci USA 115:E1157–E1165
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García-Bayona L, Comstock LE (2018) Bacterial antagonism in host-associated microbial communities. Science 361:eaat2456
Gauthier J-P, Outreman Y, Mieuzet L, Simon J-C (2015) Bacterial Communities associated with
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Geisen S, Kostenko O, Cnossen MC, ten Hooven FC, Vreš B, van der Putten WH (2017) Seed and
root endophytic fungi in a range expanding and a related plant species. Front Microbiol. https://
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Godon J-J, Arulazhagan P, Steyer J-P, Hamelin J (2016) Vertebrate bacterial gut diversity: size also
matters. BMC Ecol 16:12
Gonzalez A, King A, Robeson MS II, Song S, Shade A, Metcalf JL, Knight R (2012) Characterizing
microbial communities through space and time. Curr Opin Biotechnol 23:431–436
Gosmann C, Anahtar MN, Handley SA, Farcasanu M, Abu-Ali G, Bowman BA, Padavattan N,
Desai C, Droit L, Moodley A, Dong M, Chen Y, Ismail N, Ndung’u T, Ghebremichael MS,
Wesemann DR, Mitchell C, Dong KL, Huttenhower C, Walker BD, Virgin HW, Kwon DS
(2017) Lactobacillus-deficient cervicovaginal bacterial communities are associated with
increased HIV acquisition in young South African women. Immunity 46:29–37
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319
coral microbiome in space and time. Sci Rep 9:6785.
Eiseman B, Silen W, Bascom GS, Kauvar AJ (1958) Fecal enema as an adjunct in the treatment of
pseudomembranous enterocolitis. Surgery 44:854–859
Engel P, Martinson VG, Moran NA (2012) Functional diversity within the simple gut microbiota of
the honey bee. Proc Natl Acad Sci USA 109:11002–11007
Fabich AJ, Jones SA, Chowdhury FZ, Cernosek A, Anderson A, Smalley D, McHargue JW,
Hightower GA, Smith JT, Autieri SM, Leatham MP, Lins JJ, Allen RL, Laux DC, Cohen PS,
Conway T (2008) Comparison of carbon nutrition for pathogenic and commensal Escherichia
coli strains in the mouse intestine. Infect Immun 76:1143–1152
Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI (2014) Identifying gut microbe–host
phenotype relationships using combinatorial communities in gnotobiotic mice. Sci Transl
Med 6:220ra11
Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive Earth’s biogeochemical cycles. Science 320:1034–1039
Ferlian O, Cesarz S, Craven D, Hines J, Barry KE, Bruelheide H, Buscot F, Haider S, Heklau H,
Herrmann S, Kühn P, Pruschitzki U, Schädler M, Wagg C, Weigelt A, Wubet T, Eisenhauer N
(2018) Mycorrhiza in tree diversity–ecosystem function relationships: conceptual framework
and experimental implementation. Ecosphere 9:e02226
Fitzpatrick CR, Copeland J, Wang PW, Guttman DS, Kotanen PM, Johnson MTJ (2018) Assembly
and ecological function of the root microbiome across angiosperm plant species. Proc Natl Acad
Sci USA 115:E1157–E1165
Foster KR, Schluter J, Coyte KZ, Rakoff-Nahoum S (2017) The evolution of the host microbiome
as an ecosystem on a leash. Nature 548:43–51
Fox JW (2005) Interpreting the ‘selection effect’ of biodiversity on ecosystem function. Ecol Lett
8:846–856
Franzenburg S, Walter J, Künzel S, Wang J, Baines JF, Bosch TCG, Fraune S (2013) Distinct
antimicrobial peptide expression determines host species-specific bacterial associations. Proc
Natl Acad Sci USA 110:E3730–E3738
Fraune S, Anton-Erxleben F, Augustin R, Franzenburg S, Knop M, Schröder K, Willoweit-Ohl D,
Bosch TCG (2015) Bacteria–bacteria interactions within the microbiota of the ancestral metazoan Hydra contribute to fungal resistance. ISME J 9:1543–1556
Ganley RJ, Sniezko RA, Newcombe G (2008) Endophyte-mediated resistance against white pine
blister rust in Pinus monticola. For Ecol Manage 255:2751–2760
García-Bayona L, Comstock LE (2018) Bacterial antagonism in host-associated microbial communities. Science 361:eaat2456
Gauthier J-P, Outreman Y, Mieuzet L, Simon J-C (2015) Bacterial Communities associated with
host-adapted populations of pea aphids revealed by deep sequencing of 16S ribosomal DNA.
PLoS One 10:e0120664
Geisen S, Kostenko O, Cnossen MC, ten Hooven FC, Vreš B, van der Putten WH (2017) Seed and
root endophytic fungi in a range expanding and a related plant species. Front Microbiol. https://
doi.org/10.3389/fmicb.2017.01645
Godon J-J, Arulazhagan P, Steyer J-P, Hamelin J (2016) Vertebrate bacterial gut diversity: size also
matters. BMC Ecol 16:12
Gonzalez A, King A, Robeson MS II, Song S, Shade A, Metcalf JL, Knight R (2012) Characterizing
microbial communities through space and time. Curr Opin Biotechnol 23:431–436
Gosmann C, Anahtar MN, Handley SA, Farcasanu M, Abu-Ali G, Bowman BA, Padavattan N,
Desai C, Droit L, Moodley A, Dong M, Chen Y, Ismail N, Ndung’u T, Ghebremichael MS,
Wesemann DR, Mitchell C, Dong KL, Huttenhower C, Walker BD, Virgin HW, Kwon DS
(2017) Lactobacillus-deficient cervicovaginal bacterial communities are associated with
increased HIV acquisition in young South African women. Immunity 46:29–37
17 Diversity–Function Relationships and the Underlying Ecological Mechanisms in. . .
319