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Tilman D, Wardle DA, Kinzig AP, Daily GC, Loreau M, Grace JB, Larigauderie A, Srivastava
DS, Naeem S (2012) Biodiversity loss and its impact on humanity. Nature 486:59–67
Cariveau DP, Elijah Powell J, Koch H, Winfree R, Moran NA (2014) Variation in gut microbial
communities and its association with pathogen infection in wild bumble bees (Bombus). ISME J
8:2369–2379
Casadevall A, Pirofski L (2015) What is a host? Incorporating the microbiota into the damageresponse framework. Infect Immun 83:2–7
Chen YE, Tsao H (2013) The skin microbiome: current perspectives and future challenges. J Am
Acad Dermatol 69:143–155.e3
Cherrington CA, Hinton M, Pearson GR, Chopra I (1991) Short-chain organic acids at pH 5.0 kill
Escherichia coli and Salmonella spp. without causing membrane perturbation. J Appl Bacteriol
70:161–165
Christian N, Whitaker B, Clay K (2015) Microbiomes: unifying animal and plant systems through
the lens of community ecology theory. Front Microbiol. https://doi.org/10.3389/fmicb.2015.
00869
Correa CC, Ballard JWO (2016) Wolbachia associations with insects: winning or losing against a
master manipulator. Front Ecol Evol 3:153
Correa DT, Rodriguez D, Emer C, Saenz D, Adams CK, Schiesari L, Matz M, Leibold MA (2020)
Multilevel community assembly of the tadpole gut microbiome. bioRxiv. https://doi.org/10.
1101/2020.07.05.188698
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R (2009) Bacterial community
variation in human body habitats across space and time. Science 326:1694–1697
Costello EK, Stagaman K, Dethlefsen L, Bohannan BJM, Relman DA (2012) The application of
ecological theory toward an understanding of the human microbiome. Science 336:1255–1262
Costerton JW, Lewandowski Z, DeBeer D, Caldwell D, Korber D, James G (1994) Biofilms, the
customized microniche. J Bacteriol 176:2137–2142
Coyte KZ, Rakoff-Nahoum S (2019) Understanding competition and cooperation within the
mammalian gut microbiome. Curr Biol 29:R538–R544
Coyte KZ, Schluter J, Foster KR (2015) The ecology of the microbiome: networks, competition,
and stability. Science 350:663–666
Cuellar-Gempeler C, Leibold MA (2018) Multiple colonist pools shape fiddler crab-associated
bacterial communities. ISME J 12
Cuellar-Gempeler C, Leibold MA (2019) Key colonist pools and habitat filters mediate the
composition of fiddler crab-associated bacterial communities. Ecology. https://doi.org/10.
1002/ecy.2628
Davenport ER, Mizrahi-Man O, Michelini K, Barreiro LB, Ober C, Gilad Y (2014) Seasonal
variation in human gut microbiome composition. PLoS One 9:e90731
David AS, Quintana-Ascencio PF, Menges ES, Thapa-Magar KB, Afkhami ME, Searcy CA (2019)
Soil microbiomes underlie population persistence of an endangered plant species. Am Nat
194:488–494
Dawkins R (1982) The extended phenotype: the gene as the unit of selection. Freeman, Oxford
Delgado-Baquerizo M, Giaramida L, Reich PB, Khachane AN, Hamonts K, Edwards C, Lawton
LA, Singh BK (2016) Lack of functional redundancy in the relationship between microbial
diversity and ecosystem functioning. J Ecol 104:936–946
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and evolutionary perspective on
human–microbe mutualism and disease. Nature 449:811–818
Douglas AE (2010) The symbiotic habit. Princeton University Press, Princeton, NJ
Douglas AE (2019) Simple animal models for microbiome research. Nat Rev Microbiol
17:764–775
Duman JG, Olsen TM (1993) Thermal hysteresis protein activity in bacteria, fungi, and phylogenetically diverse plants. Cryobiology 30:322–328
318
C. Cuellar-Gempeler
Tilman D, Wardle DA, Kinzig AP, Daily GC, Loreau M, Grace JB, Larigauderie A, Srivastava
DS, Naeem S (2012) Biodiversity loss and its impact on humanity. Nature 486:59–67
Cariveau DP, Elijah Powell J, Koch H, Winfree R, Moran NA (2014) Variation in gut microbial
communities and its association with pathogen infection in wild bumble bees (Bombus). ISME J
8:2369–2379
Casadevall A, Pirofski L (2015) What is a host? Incorporating the microbiota into the damageresponse framework. Infect Immun 83:2–7
Chen YE, Tsao H (2013) The skin microbiome: current perspectives and future challenges. J Am
Acad Dermatol 69:143–155.e3
Cherrington CA, Hinton M, Pearson GR, Chopra I (1991) Short-chain organic acids at pH 5.0 kill
Escherichia coli and Salmonella spp. without causing membrane perturbation. J Appl Bacteriol
70:161–165
Christian N, Whitaker B, Clay K (2015) Microbiomes: unifying animal and plant systems through
the lens of community ecology theory. Front Microbiol. https://doi.org/10.3389/fmicb.2015.
00869
Correa CC, Ballard JWO (2016) Wolbachia associations with insects: winning or losing against a
master manipulator. Front Ecol Evol 3:153
Correa DT, Rodriguez D, Emer C, Saenz D, Adams CK, Schiesari L, Matz M, Leibold MA (2020)
Multilevel community assembly of the tadpole gut microbiome. bioRxiv. https://doi.org/10.
1101/2020.07.05.188698
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R (2009) Bacterial community
variation in human body habitats across space and time. Science 326:1694–1697
Costello EK, Stagaman K, Dethlefsen L, Bohannan BJM, Relman DA (2012) The application of
ecological theory toward an understanding of the human microbiome. Science 336:1255–1262
Costerton JW, Lewandowski Z, DeBeer D, Caldwell D, Korber D, James G (1994) Biofilms, the
customized microniche. J Bacteriol 176:2137–2142
Coyte KZ, Rakoff-Nahoum S (2019) Understanding competition and cooperation within the
mammalian gut microbiome. Curr Biol 29:R538–R544
Coyte KZ, Schluter J, Foster KR (2015) The ecology of the microbiome: networks, competition,
and stability. Science 350:663–666
Cuellar-Gempeler C, Leibold MA (2018) Multiple colonist pools shape fiddler crab-associated
bacterial communities. ISME J 12
Cuellar-Gempeler C, Leibold MA (2019) Key colonist pools and habitat filters mediate the
composition of fiddler crab-associated bacterial communities. Ecology. https://doi.org/10.
1002/ecy.2628
Davenport ER, Mizrahi-Man O, Michelini K, Barreiro LB, Ober C, Gilad Y (2014) Seasonal
variation in human gut microbiome composition. PLoS One 9:e90731
David AS, Quintana-Ascencio PF, Menges ES, Thapa-Magar KB, Afkhami ME, Searcy CA (2019)
Soil microbiomes underlie population persistence of an endangered plant species. Am Nat
194:488–494
Dawkins R (1982) The extended phenotype: the gene as the unit of selection. Freeman, Oxford
Delgado-Baquerizo M, Giaramida L, Reich PB, Khachane AN, Hamonts K, Edwards C, Lawton
LA, Singh BK (2016) Lack of functional redundancy in the relationship between microbial
diversity and ecosystem functioning. J Ecol 104:936–946
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and evolutionary perspective on
human–microbe mutualism and disease. Nature 449:811–818
Douglas AE (2010) The symbiotic habit. Princeton University Press, Princeton, NJ
Douglas AE (2019) Simple animal models for microbiome research. Nat Rev Microbiol
17:764–775
Duman JG, Olsen TM (1993) Thermal hysteresis protein activity in bacteria, fungi, and phylogenetically diverse plants. Cryobiology 30:322–328
318
C. Cuellar-Gempeler