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Barabás G, D’Andrea R, Rael R, Meszéna G, Ostling A (2013) Emergent neutrality or hidden
niches? Oikos 122:1565–1572
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https://doi.org/10.3389/fmicb.2020.00101
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and its relevance to the human microbiome. PLoS One 10:e0134116–e0134116
Belisle M, Peay KG, Fukami T (2012) Flowers as islands: spatial distribution of nectar-inhabiting
microfungi among plants of mimulus aurantiacus, a hummingbird-pollinated shrub. Microb
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Belisle M, Mendenhall CD, Oviedo Brenes F, Fukami T (2014) Temporal variation in fungal
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12:44–51
Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E, Nikkïla J, Monti D, Satokari R,
Franceschi C, Brigidi P, De Vos W (2010) Through ageing, and beyond: gut microbiota and
inflammatory status in seniors and centenarians. PLoS One 5:e10667
Blaser MJ (2014) The microbiome revolution. J Clin Invest 124:4162–4165
Blum JE, Fischer CN, Miles J, Handelsman J (2013) Frequent replenishment sustains the beneficial
microbiome of Drosophila melanogaster. mBio 4:e00860-13
Bojanova DP, Bordenstein SR (2016) Fecal transplants: what is being transferred? PLoS Biol 14:
e1002503
Bond EM, Chase JM (2002) Biodiversity and ecosystem functioning at local and regional spatial
scales. Ecol Lett 5:467–470
Brinker P, Fontaine MC, Beukeboom LW, Falcao Salles J (2019) Host, symbionts, and the
microbiome: the missing tripartite interaction. Trends Microbiol 27:480–488
Brownlie JC, Cass BN, Riegler M, Witsenburg JJ, Iturbe-Ormaetxe I, McGraw EA, O’Neill SL
(2009) Evidence for metabolic provisioning by a common invertebrate endosymbiont,
Wolbachia pipientis, during periods of nutritional stress. PLoS Pathog 5:e1000368
Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M,
Viale A, Littmann E, van den Brink MRM, Jenq RR, Taur Y, Sander C, Cross JR, Toussaint
NC, Xavier JB, Pamer EG (2015) Precision microbiome reconstitution restores bile acid
mediated resistance to Clostridium difficile. Nature 517:205–208
Bulgarelli D, Schlaeppi K, Spaepen S, van Themaat EVL, Schulze-Lefert P (2013) Structure and
functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807–838
Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T (2011) Bacterial community assembly
based on functional genes rather than species. Proc Natl Acad Sci USA 108:14288–14293
Busby PE, Soman C, Wagner MR, Friesen ML, Kremer J, Bennett A, Morsy M, Eisen JA, Leach
JE, Dangl JL (2017) Research priorities for harnessing plant microbiomes in sustainable
agriculture. PLoS Biol 15:e2001793
Campbell AH, Marzinelli EM, Gelber J, Steinberg PD (2015) Spatial variability of microbial
assemblages associated with a dominant habitat-forming seaweed. Front Microbiol 6:230
Cao H-T, Gibson TE, Bashan A, Liu Y-Y (2017) Inferring human microbial dynamics from
temporal metagenomics data: pitfalls and lessons. Bioessays 39:1600188
Cardinale BJ, Matulich KL, Hooper DU, Byrnes JE, Duffy E, Gamfeldt L, Balvanera P, O’Connor
MI, Gonzalez A (2011) The functional role of producer diversity in ecosystems. Am J Bot
98:572–592
17 Diversity–Function Relationships and the Underlying Ecological Mechanisms in. . .
317
Quantifying the evidence for biodiversity effects on ecosystem functioning and services. Ecol
Lett 9:1146–1156
Barabás G, D’Andrea R, Rael R, Meszéna G, Ostling A (2013) Emergent neutrality or hidden
niches? Oikos 122:1565–1572
Barnes EM, Carter EL, Lewis JD (2020) Predicting microbiome function across space is confounded by strain-level differences and functional redundancy across taxa. Front Microbiol.
https://doi.org/10.3389/fmicb.2020.00101
Barrett LG, Bever JD, Bissett A, Thrall PH (2015) Partner diversity and identity impacts on plant
productivity in Acacia–rhizobial interactions. J Ecol 103:130–142
Beasley DE, Koltz AM, Lambert JE, Fierer N, Dunn RR (2015) The evolution of stomach acidity
and its relevance to the human microbiome. PLoS One 10:e0134116–e0134116
Belisle M, Peay KG, Fukami T (2012) Flowers as islands: spatial distribution of nectar-inhabiting
microfungi among plants of mimulus aurantiacus, a hummingbird-pollinated shrub. Microb
Ecol 63:711–718
Belisle M, Mendenhall CD, Oviedo Brenes F, Fukami T (2014) Temporal variation in fungal
communities associated with tropical hummingbirds and nectarivorous bats. Fungal Ecol
12:44–51
Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E, Nikkïla J, Monti D, Satokari R,
Franceschi C, Brigidi P, De Vos W (2010) Through ageing, and beyond: gut microbiota and
inflammatory status in seniors and centenarians. PLoS One 5:e10667
Blaser MJ (2014) The microbiome revolution. J Clin Invest 124:4162–4165
Blum JE, Fischer CN, Miles J, Handelsman J (2013) Frequent replenishment sustains the beneficial
microbiome of Drosophila melanogaster. mBio 4:e00860-13
Bojanova DP, Bordenstein SR (2016) Fecal transplants: what is being transferred? PLoS Biol 14:
e1002503
Bond EM, Chase JM (2002) Biodiversity and ecosystem functioning at local and regional spatial
scales. Ecol Lett 5:467–470
Brinker P, Fontaine MC, Beukeboom LW, Falcao Salles J (2019) Host, symbionts, and the
microbiome: the missing tripartite interaction. Trends Microbiol 27:480–488
Brownlie JC, Cass BN, Riegler M, Witsenburg JJ, Iturbe-Ormaetxe I, McGraw EA, O’Neill SL
(2009) Evidence for metabolic provisioning by a common invertebrate endosymbiont,
Wolbachia pipientis, during periods of nutritional stress. PLoS Pathog 5:e1000368
Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M,
Viale A, Littmann E, van den Brink MRM, Jenq RR, Taur Y, Sander C, Cross JR, Toussaint
NC, Xavier JB, Pamer EG (2015) Precision microbiome reconstitution restores bile acid
mediated resistance to Clostridium difficile. Nature 517:205–208
Bulgarelli D, Schlaeppi K, Spaepen S, van Themaat EVL, Schulze-Lefert P (2013) Structure and
functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807–838
Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T (2011) Bacterial community assembly
based on functional genes rather than species. Proc Natl Acad Sci USA 108:14288–14293
Busby PE, Soman C, Wagner MR, Friesen ML, Kremer J, Bennett A, Morsy M, Eisen JA, Leach
JE, Dangl JL (2017) Research priorities for harnessing plant microbiomes in sustainable
agriculture. PLoS Biol 15:e2001793
Campbell AH, Marzinelli EM, Gelber J, Steinberg PD (2015) Spatial variability of microbial
assemblages associated with a dominant habitat-forming seaweed. Front Microbiol 6:230
Cao H-T, Gibson TE, Bashan A, Liu Y-Y (2017) Inferring human microbial dynamics from
temporal metagenomics data: pitfalls and lessons. Bioessays 39:1600188
Cardinale BJ, Matulich KL, Hooper DU, Byrnes JE, Duffy E, Gamfeldt L, Balvanera P, O’Connor
MI, Gonzalez A (2011) The functional role of producer diversity in ecosystems. Am J Bot
98:572–592
17 Diversity–Function Relationships and the Underlying Ecological Mechanisms in. . .
317