11. Pennisi E. Genomics. ENCODE project writes eulogy for junk DNA. Science. 2012;337
(6099):1159, 61.
12. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. Initial sequencing and
analysis of the human genome. Nature. 2001;409(6822):860–921.
13. McCombie WR, McPherson JD, Mardis ER. Next-Generation Sequencing Technologies. Cold
Spring Harb Perspect Med. 2019;9(11):a036798.
14. Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, et al. A survey
of best practices for RNA-seq data analysis. Genome Biol. 2016;17:13.
15. Yan H, Tian S, Slager SL, Sun Z. ChIP-seq in studying epigenetic mechanisms of disease and
promoting precision medicine: progresses and future directions. Epigenomics. 2016;8
(9):1239–58.
16. Barros-Silva D, Marques CJ, Henrique R, Jeronimo C. Profiling DNA methylation based on nextgeneration sequencing approaches: new insights and clinical applications. Genes (Basel). 2018;9
(9):429.
17. Lappalainen T, Scott AJ, Brandt M, Hall IM. Genomic analysis in the age of human genome
sequencing. Cell. 2019;177(1):70–84.
18. Petersen BS, Fredrich B, Hoeppner MP, Ellinghaus D, Franke A. Opportunities and challenges of
whole-genome and -exome sequencing. BMC Genet. 2017;18(1):14.
19. Jennings LJ, Arcila ME, Corless C, Kamel-Reid S, Lubin IM, Pfeifer J, et al. Guidelines for
validation of next-generation sequencing-based oncology panels: a joint consensus recommendation of the association for molecular pathology and college of American Pathologists. J Mol
Diagn. 2017;19(3):341–65.
20. Dubchak I, Poliakov A, Kislyuk A, Brudno M. Multiple whole-genome alignments without a
reference organism. Genome Res. 2009;19(4):682–9.
21. de Lannoy C, de Ridder D, Risse J. The long reads ahead: de novo genome assembly using the
MinION. F1000Res. 2017;6:1083.
1 Next Generation Sequencing (NGS): What Can Be Sequenced?
15
(6099):1159, 61.
12. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. Initial sequencing and
analysis of the human genome. Nature. 2001;409(6822):860–921.
13. McCombie WR, McPherson JD, Mardis ER. Next-Generation Sequencing Technologies. Cold
Spring Harb Perspect Med. 2019;9(11):a036798.
14. Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, et al. A survey
of best practices for RNA-seq data analysis. Genome Biol. 2016;17:13.
15. Yan H, Tian S, Slager SL, Sun Z. ChIP-seq in studying epigenetic mechanisms of disease and
promoting precision medicine: progresses and future directions. Epigenomics. 2016;8
(9):1239–58.
16. Barros-Silva D, Marques CJ, Henrique R, Jeronimo C. Profiling DNA methylation based on nextgeneration sequencing approaches: new insights and clinical applications. Genes (Basel). 2018;9
(9):429.
17. Lappalainen T, Scott AJ, Brandt M, Hall IM. Genomic analysis in the age of human genome
sequencing. Cell. 2019;177(1):70–84.
18. Petersen BS, Fredrich B, Hoeppner MP, Ellinghaus D, Franke A. Opportunities and challenges of
whole-genome and -exome sequencing. BMC Genet. 2017;18(1):14.
19. Jennings LJ, Arcila ME, Corless C, Kamel-Reid S, Lubin IM, Pfeifer J, et al. Guidelines for
validation of next-generation sequencing-based oncology panels: a joint consensus recommendation of the association for molecular pathology and college of American Pathologists. J Mol
Diagn. 2017;19(3):341–65.
20. Dubchak I, Poliakov A, Kislyuk A, Brudno M. Multiple whole-genome alignments without a
reference organism. Genome Res. 2009;19(4):682–9.
21. de Lannoy C, de Ridder D, Risse J. The long reads ahead: de novo genome assembly using the
MinION. F1000Res. 2017;6:1083.
1 Next Generation Sequencing (NGS): What Can Be Sequenced?
15