273
Digestive and Respiratory System
Jarikji, Z. H., Vanamala, S., Beck, C. W., Wright, C. V., Leach,
S. D., & Horb, M. E. (2007). Differential ability of Ptf1a and
Ptf1a-VP16 to convert stomach, duodenum and liver to pancreas. Developmental Biology, 304 (2), 786–799.
Karaulanov, E., Knöchel, W., & Niehrs, C. (2004). Transcriptional
regulation of BMP4 synexpression in transgenic Xenopus.
The EMBO Journal, 23 (4), 844–856.
Keenan, I. D., Sharrard, R. M., & Isaacs, H. V. (2006). FGF signal transduction and the regulation of Cdx gene expression.
Developmental Biology, 299 (2), 478–488.
Kelly, G. M., & Drysdale, T. A. (2015). Retinoic acid and the development of the endoderm. Journal of Developmental Biology,
3 (2), 25–56.
Kelly, O. G., & Melton, D. A. (2000). Development of the pancreas in Xenopus laevis. Developmental Dynamics, 218(4),
615–627.
Kenny, A. P., Rankin, S. A., Allbee, A. W., Prewitt, A. R., Zhang,
Z., Tabangin, M. E., Shif ey, E. T., Louza, M. P., & Zorn, A.
M. (2012). Sizzled-tolloid interactions maintain foregut progenitors by regulating fbronectin-dependent BMP signaling.
Developmental Cell, 23 (2), 292–304.
Kim, E., Jiang, M., Huang, H., Zhang, Y., Tjota, N., Gao, X., Robert,
J., Gilmore, N., Gan, L., & Que, J. (2019). Isl1 regulation of
Nkx2.1 in the early foregut epithelium is required for tracheaesophageal separation and lung lobation. Developmental Cell,
51 (6), 675–683.e4.
Kjolby, R., Truchado-Garcia, M., Iruvanti, S., & Harland, R. M.
(2019). Integration of Wnt and FGF signaling in the Xenopus
gastrula at TCF and Ets binding sites shows the importance
of short-range repression by TCF in patterning the marginal
zone. Development, 146 (15), dev179580.
Kofent, J., & Spagnoli, F. M. (2016). Xenopus as a model system
for studying pancreatic development and diabetes. Seminars
in Cell & Developmental Biology, 51, 106–116.
Kofent, J., Zhang, J., & Spagnoli, F. M. (2016). The histone methyltransferase Setd7 promotes pancreatic progenitor identity.
Development, 143 (19), 3573–3581.
Kotalova, R., Dusatkova, P., Cinek, O., Dusatkova, L., Dedic, T.,
Seeman, T., Lebl, J., & Pruhova, S. (2015). Hepatic phenotypes of HNF1B gene mutations: A case of neonatal cholestasis requiring portoenterostomy and literature review.
World Journal of gastroenterology, 21 (8), 2550–2557.
Kubo, A., Shinozaki, K., Shannon, J. M., Kouskoff, V., Kennedy,
M., Woo, S., Fehling, H. J., & Keller, G. (2004) . Development
of defnitive endoderm from embryonic stem cells in culture.
Development, 131, 1651–1662.
Kurmann, A. A., Serra, M., Hawkins, F., Rankin, S. A., Mori,
M., Astapova, I., Ullas, S., Lin, S., Bilodeau, M., Rossant,
J., Jean, J. C., Ikonomou, L., Deterding, R. R., Shannon, J.
M., Zorn, A. M., Hollenberg, A. N., & Kotton, D. N. (2015).
Regeneration of thyroid function by transplantation of differentiated pluripotent stem cells. Cell Stem Cell, 17(5),
527–542.
Lee, Y. H., Williams, A., Hong, C. S., You, Y., Senoo, M., & SaintJeannet, J. P. (2013). Early development of the thymus in
Xenopus laevis. Developmental Dynamics, 242 (2), 164–178.
Li, Y., Rankin, S. A., Sinner, D., Kenny, A. P., Krieg, P. A., & Zorn,
A. M. (2008). Sfrp5 coordinates foregut specif cation and
morphogenesis by antagonizing both canonical and noncanonical Wnt11 signaling. Genes & Development, 22(21),
3050–3063.
Loh, K. M., Ang, L. T., Zhang, J., Kumar, V., Ang, J., Auyeong, J.
Q., Lee, K. L., Choo, S. H., Lim, C. Y., Nichane, M., Tan, J.,
Noghabi, M. S., Azzola, L., Ng, E. S., Durruthy-Durruthy, J.,
Sebastiano, V., Poellinger, L., Elefanty, A. G., Stanley, E. G.,
Chen, Q., Prabhakar, S., Weissman, I. L., & Lim, B. (2014).
Effcient endoderm induction from human pluripotent stem
cells by logically directing signals controlling lineage bifurcations. Cell Stem Cell, 14 (2), 237–252.
Lokmane, L., Haumaitre, C., Garcia-Villalba, P., Anselme, I.,
Schneider-Maunoury, S., & Cereghini, S. (2008). Crucial role
of vHNF1 in vertebrate hepatic specif cation. Development,
135 (16), 2777–2786.
Manley, N. R., & Condie, B. G. (2010). Transcriptional regulation
of thymus organogenesis and thymic epithelial cell differentiation. Progress in Molecular Biology and Translational
Science, 92, 103–120.
Marlétaz, F., Maeso, I., Faas, L., Isaacs, H. V., & Holland, P. W.
(2015). Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution. BMC
Biology, 13, 56.
McCauley, H. A., & Wells, J. M. (2017). Pluripotent stem cellderived organoids: Using principles of developmental biology to grow human tissues in a dish. Development, 144(6),
958–962.
McLin, V. A., Rankin, S. A., & Zorn, A. M. (2007). Repression
of Wnt/beta-catenin signaling in the anterior endoderm is
essential for liver and pancreas development. Development,
134 (12), 2207–2217.
Moody, S. A. (1987). Fates of the blastomeres of the 32-cell-stage
Xenopus embryo. Developmental Biology, 122 (2), 300–319.
Mukherjee, S., Chaturvedi, P., Rankin, S. A., Fish, M. B., Wlizla,
M., Paraiso, K. D., MacDonald, M., Chen, X., Weirauch, M.
T., Blitz, I. L., Cho, K. W., & Zorn, A. M. (2020). Sox17 and
β-catenin co-occupy Wnt-responsive enhancers to govern the
endoderm gene regulatory network. eLife, 9, e58029.
Múnera, J. O., Sundaram, N., Rankin, S. A., Hill, D., Watson, C.,
Mahe, M., Vallance, J. E., Shroyer, N. F., Sinagoga, K. L.,
Zarzoso-Lacoste, A., Hudson, J. R., Howell, J. C., Chatuvedi,
P., Spence, J. R., Shannon, J. M., Zorn, A. M., Helmrath, M.
A., & Wells, J. M. (2017). Differentiation of human pluripotent stem cells into colonic organoids via transient activation
of BMP signaling. Cell Stem Cell, 21 (1), 51–64.e6.
Nascone, N., & Mercola, M. (1995). An inductive role for the endoderm in Xenopus cardiogenesis. Development, 121 , 515–523.
Nasr, T., Mancini, P., Rankin, S. A., Edwards, N. A., Agricola, Z.
N., Kenny, A. P., Kinney, J. L., Daniels, K., Vardanyan, J.,
Han, L., Trisno, S. L., Cha, S. W., Wells, J. M., Kofron, M.
J., & Zorn, A. M. (2019). Endosome-mediated epithelial
remodeling downstream of Hedgehog-Gli is required for
tracheoesophageal separation. Developmental Cell, 51(6),
665–674.e6.
Nenni, M. J., Fisher, M. E., James-Zorn, C., Pells, T. J., Ponferrada,
V., Chu, S., Fortriede, J. D., Burns, K. A., Wang, Y., Lotay,
V. S., Wang, D. Z., Segerdell, E., Chaturvedi, P., Karimi,
K., Vize, P. D., & Zorn, A. M. (2019). Xenbase: Facilitating
the use of Xenopus to model human disease. Frontiers in
Physiology, 10, 154.
Nieuwkoop, P. D., & Faber, J. (1994). Normal table of Xenopus
laevis (Daudin). Garland Publishing Inc, New York. ISBN
0-8153-1896-0.
Onichtchouk, D., Gawantka, V., Dosch, R., Delius, H., Hirschfeld,
K., Blumenstock, C., & Niehrs, C. (1996). The Xvent-2
homeobox gene is part of the BMP-4 signalling pathway
controlling dorsoventral patterning of Xenopus mesoderm.
Development, 122 (10), 3045–3053.
Paraiso, K. D., Blitz, I. L., Coley, M., Cheung, J., Sudou, N., Taira,
M., & Cho, K. (2019). Endodermal maternal transcription
factors establish super-enhancers during zygotic genome
activation. Cell Reports, 27 (10), 2962.e5–2977.e5.
Digestive and Respiratory System
Jarikji, Z. H., Vanamala, S., Beck, C. W., Wright, C. V., Leach,
S. D., & Horb, M. E. (2007). Differential ability of Ptf1a and
Ptf1a-VP16 to convert stomach, duodenum and liver to pancreas. Developmental Biology, 304 (2), 786–799.
Karaulanov, E., Knöchel, W., & Niehrs, C. (2004). Transcriptional
regulation of BMP4 synexpression in transgenic Xenopus.
The EMBO Journal, 23 (4), 844–856.
Keenan, I. D., Sharrard, R. M., & Isaacs, H. V. (2006). FGF signal transduction and the regulation of Cdx gene expression.
Developmental Biology, 299 (2), 478–488.
Kelly, G. M., & Drysdale, T. A. (2015). Retinoic acid and the development of the endoderm. Journal of Developmental Biology,
3 (2), 25–56.
Kelly, O. G., & Melton, D. A. (2000). Development of the pancreas in Xenopus laevis. Developmental Dynamics, 218(4),
615–627.
Kenny, A. P., Rankin, S. A., Allbee, A. W., Prewitt, A. R., Zhang,
Z., Tabangin, M. E., Shif ey, E. T., Louza, M. P., & Zorn, A.
M. (2012). Sizzled-tolloid interactions maintain foregut progenitors by regulating fbronectin-dependent BMP signaling.
Developmental Cell, 23 (2), 292–304.
Kim, E., Jiang, M., Huang, H., Zhang, Y., Tjota, N., Gao, X., Robert,
J., Gilmore, N., Gan, L., & Que, J. (2019). Isl1 regulation of
Nkx2.1 in the early foregut epithelium is required for tracheaesophageal separation and lung lobation. Developmental Cell,
51 (6), 675–683.e4.
Kjolby, R., Truchado-Garcia, M., Iruvanti, S., & Harland, R. M.
(2019). Integration of Wnt and FGF signaling in the Xenopus
gastrula at TCF and Ets binding sites shows the importance
of short-range repression by TCF in patterning the marginal
zone. Development, 146 (15), dev179580.
Kofent, J., & Spagnoli, F. M. (2016). Xenopus as a model system
for studying pancreatic development and diabetes. Seminars
in Cell & Developmental Biology, 51, 106–116.
Kofent, J., Zhang, J., & Spagnoli, F. M. (2016). The histone methyltransferase Setd7 promotes pancreatic progenitor identity.
Development, 143 (19), 3573–3581.
Kotalova, R., Dusatkova, P., Cinek, O., Dusatkova, L., Dedic, T.,
Seeman, T., Lebl, J., & Pruhova, S. (2015). Hepatic phenotypes of HNF1B gene mutations: A case of neonatal cholestasis requiring portoenterostomy and literature review.
World Journal of gastroenterology, 21 (8), 2550–2557.
Kubo, A., Shinozaki, K., Shannon, J. M., Kouskoff, V., Kennedy,
M., Woo, S., Fehling, H. J., & Keller, G. (2004) . Development
of defnitive endoderm from embryonic stem cells in culture.
Development, 131, 1651–1662.
Kurmann, A. A., Serra, M., Hawkins, F., Rankin, S. A., Mori,
M., Astapova, I., Ullas, S., Lin, S., Bilodeau, M., Rossant,
J., Jean, J. C., Ikonomou, L., Deterding, R. R., Shannon, J.
M., Zorn, A. M., Hollenberg, A. N., & Kotton, D. N. (2015).
Regeneration of thyroid function by transplantation of differentiated pluripotent stem cells. Cell Stem Cell, 17(5),
527–542.
Lee, Y. H., Williams, A., Hong, C. S., You, Y., Senoo, M., & SaintJeannet, J. P. (2013). Early development of the thymus in
Xenopus laevis. Developmental Dynamics, 242 (2), 164–178.
Li, Y., Rankin, S. A., Sinner, D., Kenny, A. P., Krieg, P. A., & Zorn,
A. M. (2008). Sfrp5 coordinates foregut specif cation and
morphogenesis by antagonizing both canonical and noncanonical Wnt11 signaling. Genes & Development, 22(21),
3050–3063.
Loh, K. M., Ang, L. T., Zhang, J., Kumar, V., Ang, J., Auyeong, J.
Q., Lee, K. L., Choo, S. H., Lim, C. Y., Nichane, M., Tan, J.,
Noghabi, M. S., Azzola, L., Ng, E. S., Durruthy-Durruthy, J.,
Sebastiano, V., Poellinger, L., Elefanty, A. G., Stanley, E. G.,
Chen, Q., Prabhakar, S., Weissman, I. L., & Lim, B. (2014).
Effcient endoderm induction from human pluripotent stem
cells by logically directing signals controlling lineage bifurcations. Cell Stem Cell, 14 (2), 237–252.
Lokmane, L., Haumaitre, C., Garcia-Villalba, P., Anselme, I.,
Schneider-Maunoury, S., & Cereghini, S. (2008). Crucial role
of vHNF1 in vertebrate hepatic specif cation. Development,
135 (16), 2777–2786.
Manley, N. R., & Condie, B. G. (2010). Transcriptional regulation
of thymus organogenesis and thymic epithelial cell differentiation. Progress in Molecular Biology and Translational
Science, 92, 103–120.
Marlétaz, F., Maeso, I., Faas, L., Isaacs, H. V., & Holland, P. W.
(2015). Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution. BMC
Biology, 13, 56.
McCauley, H. A., & Wells, J. M. (2017). Pluripotent stem cellderived organoids: Using principles of developmental biology to grow human tissues in a dish. Development, 144(6),
958–962.
McLin, V. A., Rankin, S. A., & Zorn, A. M. (2007). Repression
of Wnt/beta-catenin signaling in the anterior endoderm is
essential for liver and pancreas development. Development,
134 (12), 2207–2217.
Moody, S. A. (1987). Fates of the blastomeres of the 32-cell-stage
Xenopus embryo. Developmental Biology, 122 (2), 300–319.
Mukherjee, S., Chaturvedi, P., Rankin, S. A., Fish, M. B., Wlizla,
M., Paraiso, K. D., MacDonald, M., Chen, X., Weirauch, M.
T., Blitz, I. L., Cho, K. W., & Zorn, A. M. (2020). Sox17 and
β-catenin co-occupy Wnt-responsive enhancers to govern the
endoderm gene regulatory network. eLife, 9, e58029.
Múnera, J. O., Sundaram, N., Rankin, S. A., Hill, D., Watson, C.,
Mahe, M., Vallance, J. E., Shroyer, N. F., Sinagoga, K. L.,
Zarzoso-Lacoste, A., Hudson, J. R., Howell, J. C., Chatuvedi,
P., Spence, J. R., Shannon, J. M., Zorn, A. M., Helmrath, M.
A., & Wells, J. M. (2017). Differentiation of human pluripotent stem cells into colonic organoids via transient activation
of BMP signaling. Cell Stem Cell, 21 (1), 51–64.e6.
Nascone, N., & Mercola, M. (1995). An inductive role for the endoderm in Xenopus cardiogenesis. Development, 121 , 515–523.
Nasr, T., Mancini, P., Rankin, S. A., Edwards, N. A., Agricola, Z.
N., Kenny, A. P., Kinney, J. L., Daniels, K., Vardanyan, J.,
Han, L., Trisno, S. L., Cha, S. W., Wells, J. M., Kofron, M.
J., & Zorn, A. M. (2019). Endosome-mediated epithelial
remodeling downstream of Hedgehog-Gli is required for
tracheoesophageal separation. Developmental Cell, 51(6),
665–674.e6.
Nenni, M. J., Fisher, M. E., James-Zorn, C., Pells, T. J., Ponferrada,
V., Chu, S., Fortriede, J. D., Burns, K. A., Wang, Y., Lotay,
V. S., Wang, D. Z., Segerdell, E., Chaturvedi, P., Karimi,
K., Vize, P. D., & Zorn, A. M. (2019). Xenbase: Facilitating
the use of Xenopus to model human disease. Frontiers in
Physiology, 10, 154.
Nieuwkoop, P. D., & Faber, J. (1994). Normal table of Xenopus
laevis (Daudin). Garland Publishing Inc, New York. ISBN
0-8153-1896-0.
Onichtchouk, D., Gawantka, V., Dosch, R., Delius, H., Hirschfeld,
K., Blumenstock, C., & Niehrs, C. (1996). The Xvent-2
homeobox gene is part of the BMP-4 signalling pathway
controlling dorsoventral patterning of Xenopus mesoderm.
Development, 122 (10), 3045–3053.
Paraiso, K. D., Blitz, I. L., Coley, M., Cheung, J., Sudou, N., Taira,
M., & Cho, K. (2019). Endodermal maternal transcription
factors establish super-enhancers during zygotic genome
activation. Cell Reports, 27 (10), 2962.e5–2977.e5.