61. Dorai-Raj S, O’Grady J, Cormican M, Colleran E (2012) Identification of host-specific
Bacteroidales 16S rDNA sequences from human sewage and ruminant feces. J Basic
Microbiol 52(3):277–284
62. Layton BA, Walters SP, Boehm AB (2009) Distribution and diversity of enterococcal surface
protein (esp) gene in animal hosts and the Pacific coast environment. J Appl Microbiol
106:1521–1531
63. Stewart JR, Boehm AB, Dubinsky EA, Fong T, Goodwin KD, Griffith JF, Noble RT, Shanks
OC, Vijayavel K, Weisberg SB (2013) Recommendations following a multi-laboratory
comparison of microbial source tracking methods. Water Res 47(18):6829–6838
64. Haugland RA, Varma M, Sivaganesan M, Kelty C, Peed L, Shanks OC (2010) Evaluation of
genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of
selected Bacteroidales species and human fecal waste by qPCR. Syst Appl Microbiol 33
(6):348–357
65. Shanks OC, Kelty CA, Sivaganesan M, Varma M, Haugland RA (2009) Quantitative PCR for
genetic markers of human fecal pollution. Appl Environ Microbiol 75(17):5507–5513
66. Xu W, McDonough MC, Erdman DD (2000) Species-specific identification of human
adenoviruses by a multiplex PCR assay. J Clin Microbiol 38:4114–4129
67. Jothikumar N, Cromeans TL, Hill VR, Lu X, Sobsey MD, Erdman DD (2005) Quantitative
real-time PCR assays for detection of human adenoviruses and identification of serotypes
40 and 41. Appl Environ Microbiol 71(6):3131–3136
68. McQuaig SM, Scott TM, Lukasik JO, Paul JH, Harwood VJ (2009) Quantification of human
polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to
other water quality indicators in water and fecal samples. Appl Environ Microbiol
75:3379–3388
69. Sinigalliano CD, Fleisher JM, Gidley ML, Solo-Gabriele HM, Shibata T, Plano LRW, Elmir
SM, Wanless D, Bartkowiak J, Boiteau R, Withum K, Abdelzaher AM, He G, Ortega C,
Zhu X, Wright ME, Kish J, Hollenbeck J, Scott T, Backer LC, Fleming LE (2010) Traditional
and molecular analyses for fecal indicator bacteria in non-point source subtropical recreational marine waters. Water Res 44:3763–3772
70. Lee C, Marion JW, Lee J (2013) Development and application of a quantitative PCR assay
targeting Catellicoccus marimammalium for assessing gull-associated fecal contamination at
Lake Erie beaches. Sci Total Environ 454–455:1–8
71. Shibata T, Solo-Gabriele HM, Sinigalliano CD, Gidley ML, Plano LRW, Fleisher JM, Wang
JD, Elmir SM, He G, Wright ME, Abdelzaher AM, Ortega C, Wanless D, Garza AC, Kish J,
Scott T, Hollenbeck J, Backer LC, Fleming LE (2010) Evaluation of conventional and
alternative monitoring methods for a recreational marine beach with nonpoint source of
fecal contamination. Environ Sci Technol 44(21):8175–8181
72. Shanks OC, Atikovic E, Blackwood AD, Lu J, Noble RT, Santo Domingo J, Siefring S,
Sivaganesan M, Haugland RP (2008) Quantitative PCR for detection and enumeration of
genetic markers of bovine fecal pollution. Appl Environ Microbiol 74(3):745–752
73. Mieszkin S, Yala JF, Joubrel R, Gourmelon M (2010) Phylogenetic analysis of Bacteroidales
16S rRNA gene sequences from human and animal effluents and assessment of ruminant
faecal pollution by real-time PCR. J Appl Microbiol 108(3):974–984
74. Reischer GH, Ebdon JE, Bauer JM, Schuster N, Ahmed W, Astrom J, Blanch AR, Bloschl G,
Byamukama D, Coakley T, Ferguson C, Goshu G, Ko G, Husman AMD, Mushi D, Poma R,
Pradhan B, Rajal V, Schade MA, Sommer R, Taylor H, Toth EM, Vrajmasu V, Wuertz S,
Mach RL, Farnleitner AH (2013) Performance characteristics of qPCR assays targeting
human and ruminant-associated Bacteroidetes for microbial source tracking across sixteen
countries on six continents. Environ Sci Technol 47(15):8548–8556
75. Layton B, Cao Y, Ebentier DL, Hanley KT, Van De Werfhorst L, Wang D, Madi T, Whitman
RL, Byappanahalli MN, Balleste E, Meijier W, Schriewer A, Wuertz S, Converse RR, Noble
RT, Srinivasan S, Rose JB, Lee CS, Lee J, Shields J, Stewart JR, Reischer G, Farnleitner A,
Sinagalliano CD, Rodrigues R, Lozach S, Gourmelon M, Peed L, Shanks OC, Jay J,
286
B. Badgley and C. Hagedorn
Bacteroidales 16S rDNA sequences from human sewage and ruminant feces. J Basic
Microbiol 52(3):277–284
62. Layton BA, Walters SP, Boehm AB (2009) Distribution and diversity of enterococcal surface
protein (esp) gene in animal hosts and the Pacific coast environment. J Appl Microbiol
106:1521–1531
63. Stewart JR, Boehm AB, Dubinsky EA, Fong T, Goodwin KD, Griffith JF, Noble RT, Shanks
OC, Vijayavel K, Weisberg SB (2013) Recommendations following a multi-laboratory
comparison of microbial source tracking methods. Water Res 47(18):6829–6838
64. Haugland RA, Varma M, Sivaganesan M, Kelty C, Peed L, Shanks OC (2010) Evaluation of
genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of
selected Bacteroidales species and human fecal waste by qPCR. Syst Appl Microbiol 33
(6):348–357
65. Shanks OC, Kelty CA, Sivaganesan M, Varma M, Haugland RA (2009) Quantitative PCR for
genetic markers of human fecal pollution. Appl Environ Microbiol 75(17):5507–5513
66. Xu W, McDonough MC, Erdman DD (2000) Species-specific identification of human
adenoviruses by a multiplex PCR assay. J Clin Microbiol 38:4114–4129
67. Jothikumar N, Cromeans TL, Hill VR, Lu X, Sobsey MD, Erdman DD (2005) Quantitative
real-time PCR assays for detection of human adenoviruses and identification of serotypes
40 and 41. Appl Environ Microbiol 71(6):3131–3136
68. McQuaig SM, Scott TM, Lukasik JO, Paul JH, Harwood VJ (2009) Quantification of human
polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to
other water quality indicators in water and fecal samples. Appl Environ Microbiol
75:3379–3388
69. Sinigalliano CD, Fleisher JM, Gidley ML, Solo-Gabriele HM, Shibata T, Plano LRW, Elmir
SM, Wanless D, Bartkowiak J, Boiteau R, Withum K, Abdelzaher AM, He G, Ortega C,
Zhu X, Wright ME, Kish J, Hollenbeck J, Scott T, Backer LC, Fleming LE (2010) Traditional
and molecular analyses for fecal indicator bacteria in non-point source subtropical recreational marine waters. Water Res 44:3763–3772
70. Lee C, Marion JW, Lee J (2013) Development and application of a quantitative PCR assay
targeting Catellicoccus marimammalium for assessing gull-associated fecal contamination at
Lake Erie beaches. Sci Total Environ 454–455:1–8
71. Shibata T, Solo-Gabriele HM, Sinigalliano CD, Gidley ML, Plano LRW, Fleisher JM, Wang
JD, Elmir SM, He G, Wright ME, Abdelzaher AM, Ortega C, Wanless D, Garza AC, Kish J,
Scott T, Hollenbeck J, Backer LC, Fleming LE (2010) Evaluation of conventional and
alternative monitoring methods for a recreational marine beach with nonpoint source of
fecal contamination. Environ Sci Technol 44(21):8175–8181
72. Shanks OC, Atikovic E, Blackwood AD, Lu J, Noble RT, Santo Domingo J, Siefring S,
Sivaganesan M, Haugland RP (2008) Quantitative PCR for detection and enumeration of
genetic markers of bovine fecal pollution. Appl Environ Microbiol 74(3):745–752
73. Mieszkin S, Yala JF, Joubrel R, Gourmelon M (2010) Phylogenetic analysis of Bacteroidales
16S rRNA gene sequences from human and animal effluents and assessment of ruminant
faecal pollution by real-time PCR. J Appl Microbiol 108(3):974–984
74. Reischer GH, Ebdon JE, Bauer JM, Schuster N, Ahmed W, Astrom J, Blanch AR, Bloschl G,
Byamukama D, Coakley T, Ferguson C, Goshu G, Ko G, Husman AMD, Mushi D, Poma R,
Pradhan B, Rajal V, Schade MA, Sommer R, Taylor H, Toth EM, Vrajmasu V, Wuertz S,
Mach RL, Farnleitner AH (2013) Performance characteristics of qPCR assays targeting
human and ruminant-associated Bacteroidetes for microbial source tracking across sixteen
countries on six continents. Environ Sci Technol 47(15):8548–8556
75. Layton B, Cao Y, Ebentier DL, Hanley KT, Van De Werfhorst L, Wang D, Madi T, Whitman
RL, Byappanahalli MN, Balleste E, Meijier W, Schriewer A, Wuertz S, Converse RR, Noble
RT, Srinivasan S, Rose JB, Lee CS, Lee J, Shields J, Stewart JR, Reischer G, Farnleitner A,
Sinagalliano CD, Rodrigues R, Lozach S, Gourmelon M, Peed L, Shanks OC, Jay J,
286
B. Badgley and C. Hagedorn