Lebaron P, Henry A, Lepeuple A-S, Pena G, Servais P (2005) An
operational method for real-time monitoring of E. coli in bathing
waters. Mar Polluut Bull 50:652–659
Levy SB, Marshall B (2004) Antibacterial resistance worldwide:
causes, challenges and responses. Nat Med 10:S122–S129
Lin H, Xu B, Chen Y, Wang W (2009) Legionella pollution in cooling
tower water of air-conditioning systems in Shanghai, China. J Appl
Microbiol 106:606–612
Lindgren E, Gustafson R (2001) Tick-borne encephalitis in Sweden and
climate change. Lancet 358:16–18
Lindsay JA, Ruzin A, Ross HF, Kurepina N, Novick RP (1998) The gene
for toxic shock toxin is carried by a family of mobile pathogenicity
islands in Staphylococcus aureus. Mol Microbiol 29:527–543
Marsalek J, Rochfort Q (2004) Urban wet-weather flows: sources
of fecal contamination impacting on recreational waters and threatening drinking-water sources. J Toxicol Environ Health Part A Curr
Issues 67(20–22):1765–1777
Martinez JL, Fajardo A, Garmendia L, Hernandez A, Linares JF,
Martı ´nez-Solano L, Sa ´nchez MB (2009) A global view of antibiotic
resistance. FEMS Microbiol Rev 33:44–65
Mesaros N et al (2007) Pseudomonas aeruginosa: resistance and therapeutic options at the turn of the new millennium. Clin Microbiol
Infect 13:560–578
Mukherjee A, Cho S, Scheftel J, Jawahir S, Smith K, Diez-Gonzalez F
(2006) Soil survival of Escherichia coli O157: H7 acquired by a
child from garden soil recently fertilized with cattle manure. J Appl
Microbiol 101:429–436
Norman RS, Moeller P, Mc Donald TJ, Morris PJ (2004) Effect of
pyocyanin on a crude-oil-degrading microbial community. Appl
Environ Microbiol 70:4004–4011
Ogden LD, Fenlon DR, Vinten AJ, Lewis D (2001) The fate of
Escherichia coli O157 in soil and its potential to contaminate
drinking water. Int J Food Microbiol 66:111–117
Oliver JD (2010) Recent findings on the viable but nonculturable sate in
pathogenic bacteria. FEMS Microbiol Rev 34:415–425
Ouattara KN, Passerat J, Servais P (2011) Faecal contamination of
water and sediment in the rivers of the Scheldt drainage network.
Environ Monit Assess 183:243–257
Paerl HW, Huisman J (2009) Climate change: a catalyst for global expansion of harmful cyanobacterial blooms. Environ Microbiol 1:27–37
Palasatien S, Lertsirivorakul R, Royros P, Wongratanacheevin S,
Sermswan RW (2008) Soil physicochemical properties related to
the presence of Burkholderia pseudomallei. Trans R Soc Trop Med
Hyg 1:S5–S9
Pelandakis M, Pernin P (2002) Use of multiplex PCR and PCR restriction enzyme analysis for detection and exploration of the variability
in the free-living amoeba Naegleria in the environment. Appl
Environ Microbiol 68:2061–2065
Perron K, Caille O, Rossier C, Van Delden C, Dumas JL, Ko ¨hler T
(2004) CzcR-CzcS, a two-component system involved in heavy
metal and carbapenem resistance in Pseudomonas aeruginosa.
J Biol Chem 279:8761–8768
Philippot L (2005) Denitrification in pathogenic bacteria: for better or
worst ? Trends Microbiol 13:191–192
Qiu X, Gurkar AU, Lory S (2006) Interstrain transfer of the large
pathogenicity island (PAPI-1) of Pseudomonas aeruginosa. Proc
Natl Acad Sci U S A 103:19830–19835
Ready PD (2008) Leishmaniasis emergence and climate change. Rev
Sci Tech Off Int Epiz 27:399–412
Ready D, Pratten J, Mordan N, Watts E, Wilson M (2007) The effect of
amalgam exposure on mercury- and antibiotic-resistant bacteria. Int
J Antimicrob Agents 30:34–39
Rose JB, Farrah SR, Harwood VJ, Levine AD, Lukasik J, Menendez P,
Scott T (2004) Reduction of pathogens, indicators bacteria and
alternative indicators by wastewater treatment and reclamation processes. WERF final report. IWA Publishing, London
Salazar-Lindo E, Seas C, Gutierrez D (2008) ENSO and cholera in
South America: what can we learn about it from the 1991 cholera
outbreak? Int J Environ Health 2:30–36
Savichtcheva O, Okabe S (2006) Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current
methodologies for direct pathogen monitoring and future application perspectives. Water Res 40:2463–2476
Schwaiger K, Harms K, Ho ¨lzel C, Meyer K, Karl M, Bauer J (2009)
Tetracycline in liquid manure selects for co-occurrence of the
resistance genes tet(M) and tet(L) in Enterococcus faecalis. Vet
Microbiol 139:386–392
Servais P, Garcia Armisen T, Lepeuple AS, Lebaron P (2005) An early
warning method to detect fecal contamination of river waters. Ann
Microbiol 55:67–72
Servais P, Garcia-Armisen T, George I, Billen G (2007) Fecal bacteria
in the rivers of the Seine drainage network: source, fate and
modeling. Sci Tot Environ 375:152–167
Simango C (2006) Prevalence of Clostridium difficile in the environment in a rural community in Zimbabwe. Trans R Soc Trop Med
Hyg 100:1146–1150
Solomon EB, Yaron S, Matthews KR (2002) Transmission of
Escherichia coli O157:H7 from contaminated manure and irrigation
water to lettuce plant tissue and its subsequent internalization. Appl
Environ Microbiol 68:397–400
Stepanauskas R, Glenn TC, Jagoe CH, Tuckfield RC, Lindell AH, King
CJ, McArthur JV (2006) Coselection for microbial resistance to
metals and antibiotics in freshwater microcosms. Environ Microbiol
8:1510–1514
Taubes G (2008) The bacteria fight back. Science 321:356–361
Tello A, Austin B, Telfer TC (2012) Selective pressure of antibiotic
pollution on bacteria of importance to public health. Environ Health
Perspect 120:1100–1106
Thompson JR, Marcelino LA, Polz MF (2010) Diversity, sources, and
detection of human bacterial pathogens in the marine environment.
In: Belkin S, Colwell RR (eds) Oceans and health, pathogens in the
marine environment. Springer, New York, pp 29–68
Vally H, Whittle A, Cameron S, Dowse GK, Watson T (2004) Outbreak
of Aeromonas hydrophila wound infections associated with mud
football. Clin Infect Dis 38:1084–1089
Vedler E, Vahter M, Heinaru A (2004) The completely sequenced
plasmid pEST4011 contains a novel IncP1 backbone and a catabolic
transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid
degradation. J Bacteriol 186:7161–7174
Von der Weid I, Marques JM, Cunha CD, Lippi RK, Dos Santos SC,
Rosado AS, Lins U, Seldin L (2007) Identification and biodegradation
potential of a novel strain of Dietzia cinnamea isolated from a
petroleum-contaminated tropical soil. Syst Appl Microbiol
4:331–339
Wery N, Bru-Adan V, Minervini C, Delge ´nes JP, Garrelly L, Godon JJ
(2008) Dynamics of Legionella spp. and bacterial populations
during the proliferation of L. pneumophila in a cooling tower
facility. Appl Environ Microbiol 74:3030–3037
Wright GD (2007) The antibiotic resistome: the nexus of chemical and
genetic diversity. Nat Rev Microbiol 5:175–186
Xu HS, Roberts NC, Adams LB, West PA, Siebeling RJ, Huq A, Huq MI,
Rahman R, Colwell RR (1982) An indirect fluorescent antibody
staining procedure for detection of Vibrio cholerae serovar
01 cells in aquatic environmental samples. J Microbiol Methods
2:221–231
You Y, Rankin SC, Aceto HW, Benson CE, Toth JD, Dou Z (2006)
Survival of Salmonella enterica serovar Newport in manure and
manure-amended soils. Appl Environ Microbiol 72:5777–5783
658
P. Lebaron et al.
operational method for real-time monitoring of E. coli in bathing
waters. Mar Polluut Bull 50:652–659
Levy SB, Marshall B (2004) Antibacterial resistance worldwide:
causes, challenges and responses. Nat Med 10:S122–S129
Lin H, Xu B, Chen Y, Wang W (2009) Legionella pollution in cooling
tower water of air-conditioning systems in Shanghai, China. J Appl
Microbiol 106:606–612
Lindgren E, Gustafson R (2001) Tick-borne encephalitis in Sweden and
climate change. Lancet 358:16–18
Lindsay JA, Ruzin A, Ross HF, Kurepina N, Novick RP (1998) The gene
for toxic shock toxin is carried by a family of mobile pathogenicity
islands in Staphylococcus aureus. Mol Microbiol 29:527–543
Marsalek J, Rochfort Q (2004) Urban wet-weather flows: sources
of fecal contamination impacting on recreational waters and threatening drinking-water sources. J Toxicol Environ Health Part A Curr
Issues 67(20–22):1765–1777
Martinez JL, Fajardo A, Garmendia L, Hernandez A, Linares JF,
Martı ´nez-Solano L, Sa ´nchez MB (2009) A global view of antibiotic
resistance. FEMS Microbiol Rev 33:44–65
Mesaros N et al (2007) Pseudomonas aeruginosa: resistance and therapeutic options at the turn of the new millennium. Clin Microbiol
Infect 13:560–578
Mukherjee A, Cho S, Scheftel J, Jawahir S, Smith K, Diez-Gonzalez F
(2006) Soil survival of Escherichia coli O157: H7 acquired by a
child from garden soil recently fertilized with cattle manure. J Appl
Microbiol 101:429–436
Norman RS, Moeller P, Mc Donald TJ, Morris PJ (2004) Effect of
pyocyanin on a crude-oil-degrading microbial community. Appl
Environ Microbiol 70:4004–4011
Ogden LD, Fenlon DR, Vinten AJ, Lewis D (2001) The fate of
Escherichia coli O157 in soil and its potential to contaminate
drinking water. Int J Food Microbiol 66:111–117
Oliver JD (2010) Recent findings on the viable but nonculturable sate in
pathogenic bacteria. FEMS Microbiol Rev 34:415–425
Ouattara KN, Passerat J, Servais P (2011) Faecal contamination of
water and sediment in the rivers of the Scheldt drainage network.
Environ Monit Assess 183:243–257
Paerl HW, Huisman J (2009) Climate change: a catalyst for global expansion of harmful cyanobacterial blooms. Environ Microbiol 1:27–37
Palasatien S, Lertsirivorakul R, Royros P, Wongratanacheevin S,
Sermswan RW (2008) Soil physicochemical properties related to
the presence of Burkholderia pseudomallei. Trans R Soc Trop Med
Hyg 1:S5–S9
Pelandakis M, Pernin P (2002) Use of multiplex PCR and PCR restriction enzyme analysis for detection and exploration of the variability
in the free-living amoeba Naegleria in the environment. Appl
Environ Microbiol 68:2061–2065
Perron K, Caille O, Rossier C, Van Delden C, Dumas JL, Ko ¨hler T
(2004) CzcR-CzcS, a two-component system involved in heavy
metal and carbapenem resistance in Pseudomonas aeruginosa.
J Biol Chem 279:8761–8768
Philippot L (2005) Denitrification in pathogenic bacteria: for better or
worst ? Trends Microbiol 13:191–192
Qiu X, Gurkar AU, Lory S (2006) Interstrain transfer of the large
pathogenicity island (PAPI-1) of Pseudomonas aeruginosa. Proc
Natl Acad Sci U S A 103:19830–19835
Ready PD (2008) Leishmaniasis emergence and climate change. Rev
Sci Tech Off Int Epiz 27:399–412
Ready D, Pratten J, Mordan N, Watts E, Wilson M (2007) The effect of
amalgam exposure on mercury- and antibiotic-resistant bacteria. Int
J Antimicrob Agents 30:34–39
Rose JB, Farrah SR, Harwood VJ, Levine AD, Lukasik J, Menendez P,
Scott T (2004) Reduction of pathogens, indicators bacteria and
alternative indicators by wastewater treatment and reclamation processes. WERF final report. IWA Publishing, London
Salazar-Lindo E, Seas C, Gutierrez D (2008) ENSO and cholera in
South America: what can we learn about it from the 1991 cholera
outbreak? Int J Environ Health 2:30–36
Savichtcheva O, Okabe S (2006) Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current
methodologies for direct pathogen monitoring and future application perspectives. Water Res 40:2463–2476
Schwaiger K, Harms K, Ho ¨lzel C, Meyer K, Karl M, Bauer J (2009)
Tetracycline in liquid manure selects for co-occurrence of the
resistance genes tet(M) and tet(L) in Enterococcus faecalis. Vet
Microbiol 139:386–392
Servais P, Garcia Armisen T, Lepeuple AS, Lebaron P (2005) An early
warning method to detect fecal contamination of river waters. Ann
Microbiol 55:67–72
Servais P, Garcia-Armisen T, George I, Billen G (2007) Fecal bacteria
in the rivers of the Seine drainage network: source, fate and
modeling. Sci Tot Environ 375:152–167
Simango C (2006) Prevalence of Clostridium difficile in the environment in a rural community in Zimbabwe. Trans R Soc Trop Med
Hyg 100:1146–1150
Solomon EB, Yaron S, Matthews KR (2002) Transmission of
Escherichia coli O157:H7 from contaminated manure and irrigation
water to lettuce plant tissue and its subsequent internalization. Appl
Environ Microbiol 68:397–400
Stepanauskas R, Glenn TC, Jagoe CH, Tuckfield RC, Lindell AH, King
CJ, McArthur JV (2006) Coselection for microbial resistance to
metals and antibiotics in freshwater microcosms. Environ Microbiol
8:1510–1514
Taubes G (2008) The bacteria fight back. Science 321:356–361
Tello A, Austin B, Telfer TC (2012) Selective pressure of antibiotic
pollution on bacteria of importance to public health. Environ Health
Perspect 120:1100–1106
Thompson JR, Marcelino LA, Polz MF (2010) Diversity, sources, and
detection of human bacterial pathogens in the marine environment.
In: Belkin S, Colwell RR (eds) Oceans and health, pathogens in the
marine environment. Springer, New York, pp 29–68
Vally H, Whittle A, Cameron S, Dowse GK, Watson T (2004) Outbreak
of Aeromonas hydrophila wound infections associated with mud
football. Clin Infect Dis 38:1084–1089
Vedler E, Vahter M, Heinaru A (2004) The completely sequenced
plasmid pEST4011 contains a novel IncP1 backbone and a catabolic
transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid
degradation. J Bacteriol 186:7161–7174
Von der Weid I, Marques JM, Cunha CD, Lippi RK, Dos Santos SC,
Rosado AS, Lins U, Seldin L (2007) Identification and biodegradation
potential of a novel strain of Dietzia cinnamea isolated from a
petroleum-contaminated tropical soil. Syst Appl Microbiol
4:331–339
Wery N, Bru-Adan V, Minervini C, Delge ´nes JP, Garrelly L, Godon JJ
(2008) Dynamics of Legionella spp. and bacterial populations
during the proliferation of L. pneumophila in a cooling tower
facility. Appl Environ Microbiol 74:3030–3037
Wright GD (2007) The antibiotic resistome: the nexus of chemical and
genetic diversity. Nat Rev Microbiol 5:175–186
Xu HS, Roberts NC, Adams LB, West PA, Siebeling RJ, Huq A, Huq MI,
Rahman R, Colwell RR (1982) An indirect fluorescent antibody
staining procedure for detection of Vibrio cholerae serovar
01 cells in aquatic environmental samples. J Microbiol Methods
2:221–231
You Y, Rankin SC, Aceto HW, Benson CE, Toth JD, Dou Z (2006)
Survival of Salmonella enterica serovar Newport in manure and
manure-amended soils. Appl Environ Microbiol 72:5777–5783
658
P. Lebaron et al.