McFadden GI, Waller RF, Ralph SA, Foth B, Tonkin C, Su V
et al (2001) The relict plastid of malaria parasites. Phycologia
40(4 suppl):16–17
McInnes AG, Ragan MA, Smith DG, Walter JA (1984) High-molecular-weight phloroglucinol based tannins from brown algae: structural variants. Hydrobiologia 116–117:597–602
McLean RO, Corrigan J, Webster J (1981) Heterotrophic nutrition in
Melosira nummuloides, a possible role in affecting distribution in
the Clyde Estuary. Br Phycol J 16:95–106
Medlin LK, Kaczmarska I (2004) Evolution of the diatoms: V. Morphological and cytological support for the major clades and a
taxonomic revision. Phycologia 43:245–270
Mereschkowsky C (1910) Theorie der zwei Plasmaarten als Grundlage
der Symbiogenesis, einer neuen Lehre von der Entstehung der
Organismen. Biol Zentralbl 30:278–367
Meyer-Harms B, Pollehne F (1998) Alloxanthin in Dinophysis
norvegica (Dinophysiales, Dinophyceae) from the Baltic Sea. J
Phycol 34:280–285
Miller JJ, Delwiche CF, Coats DW (2012) Ultrastructure of
Amoebophrya sp. and its change during the course of infection.
Protist 163:720–745
Molds W (2009) Introduction to Oomycota. http://www.ucmp.
berkeley.edu/chromista/oomycota.html
Monier A, Pagarete A, De Vargas C, Allen MJ, Read B, Claverie JM,
Ogata H (2009) Horizontal gene transfer of an entire metabolic
pathway between a eukaryotic alga and its DNA virus. Genome
Res 19:1441–1449
Moore RB, Obornik M, Janous ˇkovec J, Chrudimsky T, Vancova ´ M,
Green DH et al (2008) A photosynthetic alveolate closely related to
Apicomplexan parasites. Nature 451:959–963
Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B (2011) How many
species are there on earth and in the ocean? PLoS Biol 9(8):1–8
Moreira D, Von Der Heyden S, Bass D, Lo ´pez-Garcı ´a P, Chao E,
Cavalier-Smith T (2007) Global eukaryote phylogeny: combined
small- and large subunit ribosomal DNA trees support monophyly
of Rhizaria, Retaria and Excavata. Mol Phylogen Evol 55:255–266
Morrison HG, McArthur AG, Gillin FD, Aley SB, Adam RD, Olsen GJ
et al (2007) Genomic minimalism in the early diverging intestinal
parasite Giardia lamblia. Science 317:1921–1926
Motte J (1971) Le biocycle. Introduction a ` l’e ´tude des grands groupes
ve ´ge ´taux. Opuscula Botanica, Montpellier, 10:1–253 + 23 plates
Mueller GM, Schmit JP (2007) Fungal biodiversity: what do we know?
What can we predict? Biodivers Conserv 16:1–5
Mu ¨ller DG, Maier I, Gassman G (1985) Survey on sexual pheromone
specificity in Laminariales (Phaeophyceae). Phycologia 24:475–477
Nakayama T, Yoshida M, Noel MH, Kawashi M, Inouye I (2005)
Ultrastructure and phylogenetic position of Chrysoculter rhomboideus gen. et sp. nov. (Prymnesiophyceae), a new flagellate
haptophyte from Japanese coastal waters. Phycologia 44:369–383
Neustupa J, Ne ˘mkova ´ Y, Vesela ´ J, Steinova ´ J, S ˇ kaloud P (2013)
Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a
novel genus of coccoid green algae from subaerial corticolous
biofilms. Phycologia 52(5):411–421
Nicolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP,
Aleshin VV, Petrov NB, Pawlowski J (2004) The twilight of
Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid
eukaryotes. Proc Natl Acad Sci U S A 101(21):8066–8071
Noda S et al (2006) Identification and characterization of
ectosymbionts of distinct lineages in Bacteroidales attached to
flagellated protists in the gut of termites and a wood-feeding cockroach. Environ Microbiol 8:11–20
Not F et al (2007) Picobiliphytes: a marine picoplanctonic algal group
with unknown affinities to other Eukaryotes. Science 315:253–255
Nozaki H, Maruyama S, Matsuzaki M, Nakada T, Kato S, Misawa K
(2009) Phylogenetic position of Glaucophyta, green plants
(Archaeplastida) and Haptophyta (Chromalveolata) as deduced from
slowly evolving nuclear genes. Mol Phylogenet Evol 55:872–880
Obornı ´k M, Modry ´ D, Lukes ˇ M, Cernotı ´kova ´-Str ˇı ´brna ´ E, Cihla ´r ˇ J,
Tesar ˇova ´ M, Kotabova ´ E, Vancova ´ M, Pra ´s ˇil O, Lukes ˇ J (2012)
Morphology, ultrastructure and life cycle of Vitrella brassicaformis
n. sp., n. gen., a novel chromerid from the Great Barrier Reef.
Protist 163(2):306–323
Okamoto N, Inouye I (2005) The Katablepharids are a distant sister
group of the Cryptophyta: a proposal for Katablepharidophyta
divisio nova/Katablepharida phylum novum based on SSU rDNA
and beta-tubulin phylogeny. Protist 156:163–179
Ota S, Ueda K, Ishida KI (2007) Norrisiella sphaerica gen. et sp. nov.,
a new coccoid Chlorarachniophyte from Baja California, Mexico.
J Plant Res 120:661–670
Ota S, Kudo A, Ishida KI (2011) Gymnochlora dimorpha sp. nov., a
new chlorarachnophyte with unique daughter cell behaviour.
Phycologia 50(3):317–326
Palmer JD, Soltis DE, Chase MW (2004) The plant tree of life: an
overview and some points of view. Am J Bot 91:1437–1445
Pasanen AL, Yli-Pietila K, Pasanen P, Kalliokoski P, Tarhanen J (1999)
Ergosterol content in various fungal species and biocontaminated
building materials. Appl Environ Microbiol 65:138–142
Paterson HL, Pesant S, Clode P, Knott B, Waite AM (2007) Systematics of a rare radiolarian – Coelodiceras spinosum Haecker
(Sarcodina: Actinopoda: Phaeodaria: Coelodendridae). Deep Sea
Res II 54:1094–1102
Patterson DJ (1989) Stramenopiles: chromophytes from a protistean
perspective. In: Green JC, Leadbeater BSC, Diver WL (eds) The
chromophyte algae. Problems and perspectives. Clarendon, Lonon,
pp 357–379
Pawlowski J et al (2012) CBOL Protist Working Group: barcoding
eukaryotic richness beyond the animal, plant, and fungal kingdoms.
PLoS Biol 10:e1001419
Pedro ´s-Alio ´ C (2003) Diversity of microorganisms. In: Vila ` M, Roda ` F,
Ros J (eds) Seminar on biodiversity and biological conservation.
Institut d’Estudis Catalans Publ, Barcelona, pp 339–353
Pellegrini L (1974) Origine et modifications ultrastructurales du
mate ´riel osmiophile contenu dans les physodes et dans certains
corps iridescents des cellules ve ´ge ´tatives apicales chez Cystoseira
stricta Sauvageau (Phe ´ophyce ´e, Fucale). C R Acad Sci
279:903–906
Peters AF, Mu ¨ller DG (1985) On the sexual reproduction of
Dictyosiphon foeniculaceus (Phaeophyceae, Dictyosiphonales).
Helgol Meeresunters 39:441–447
Pitombo LF, Teixeira VL, Kelecom A (1989) Feromo ˆnios sexuais
de algas pardas. Uma visa ˜o quimiosistema ´tica. Insula, Brazil
19(suppl):229–248
Prasad AHSK, Nienow JA, Livingstone RJ (1990) The genus
Cyclotella (Bacillariophyta) in Choctawhatchee Bay, Florida, with
special reference to C. striata and C. choctawhatcheeana sp. nov.
Phycologia 29:418–436
Puglisi E, Nicelli M, Capri E, Trevisan M, Del Re AAM (2003)
Cholesterol, b-sitosterol, ergosterol, and coprostanol in agricultural
soils. J Environ Qual 32:466–471
Raven PH, Evert RF, Eichhorn SE, Bouharmont J (2000) Biologie
ve ´ge ´tale. De Boeck publication, p 968
Raven JA, Waite AM (2004) The evolution of silicification in
diatoms: inescapable sinking and sinking as escape? New Phytol
162:45–61
Robert D, Catesson AM (1990) Biologie ve ´ge ´tale, tome 2. Caracte ´ristiques et strate ´gie e ´volutive des plantes. Organisation ve ´ge ´tative.
Doin publication, Paris, pp viii + 256
Rodriguez F, Derelle E, Guillou L, Le Gall F, Vaulot D, Moreau H
(2005) Ecotype diversity in the marine picoeukaryote Ostreococcus
(Chlorophyta, Prasinophyceae). Environ Microbiol 7:853–859
Rokas A (2006) Genomics and the tree of life. Science 313:1897–1898
Sakaguchi M, Inagaki Y, Hashimoto T (2007) Centrohelida is still
searching for a phylogenetic home: analyses of seven
Raphidiophrys contractilis genes. Gene 405(1–2):47–54
256
C.-F. Boudouresque
et al (2001) The relict plastid of malaria parasites. Phycologia
40(4 suppl):16–17
McInnes AG, Ragan MA, Smith DG, Walter JA (1984) High-molecular-weight phloroglucinol based tannins from brown algae: structural variants. Hydrobiologia 116–117:597–602
McLean RO, Corrigan J, Webster J (1981) Heterotrophic nutrition in
Melosira nummuloides, a possible role in affecting distribution in
the Clyde Estuary. Br Phycol J 16:95–106
Medlin LK, Kaczmarska I (2004) Evolution of the diatoms: V. Morphological and cytological support for the major clades and a
taxonomic revision. Phycologia 43:245–270
Mereschkowsky C (1910) Theorie der zwei Plasmaarten als Grundlage
der Symbiogenesis, einer neuen Lehre von der Entstehung der
Organismen. Biol Zentralbl 30:278–367
Meyer-Harms B, Pollehne F (1998) Alloxanthin in Dinophysis
norvegica (Dinophysiales, Dinophyceae) from the Baltic Sea. J
Phycol 34:280–285
Miller JJ, Delwiche CF, Coats DW (2012) Ultrastructure of
Amoebophrya sp. and its change during the course of infection.
Protist 163:720–745
Molds W (2009) Introduction to Oomycota. http://www.ucmp.
berkeley.edu/chromista/oomycota.html
Monier A, Pagarete A, De Vargas C, Allen MJ, Read B, Claverie JM,
Ogata H (2009) Horizontal gene transfer of an entire metabolic
pathway between a eukaryotic alga and its DNA virus. Genome
Res 19:1441–1449
Moore RB, Obornik M, Janous ˇkovec J, Chrudimsky T, Vancova ´ M,
Green DH et al (2008) A photosynthetic alveolate closely related to
Apicomplexan parasites. Nature 451:959–963
Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B (2011) How many
species are there on earth and in the ocean? PLoS Biol 9(8):1–8
Moreira D, Von Der Heyden S, Bass D, Lo ´pez-Garcı ´a P, Chao E,
Cavalier-Smith T (2007) Global eukaryote phylogeny: combined
small- and large subunit ribosomal DNA trees support monophyly
of Rhizaria, Retaria and Excavata. Mol Phylogen Evol 55:255–266
Morrison HG, McArthur AG, Gillin FD, Aley SB, Adam RD, Olsen GJ
et al (2007) Genomic minimalism in the early diverging intestinal
parasite Giardia lamblia. Science 317:1921–1926
Motte J (1971) Le biocycle. Introduction a ` l’e ´tude des grands groupes
ve ´ge ´taux. Opuscula Botanica, Montpellier, 10:1–253 + 23 plates
Mueller GM, Schmit JP (2007) Fungal biodiversity: what do we know?
What can we predict? Biodivers Conserv 16:1–5
Mu ¨ller DG, Maier I, Gassman G (1985) Survey on sexual pheromone
specificity in Laminariales (Phaeophyceae). Phycologia 24:475–477
Nakayama T, Yoshida M, Noel MH, Kawashi M, Inouye I (2005)
Ultrastructure and phylogenetic position of Chrysoculter rhomboideus gen. et sp. nov. (Prymnesiophyceae), a new flagellate
haptophyte from Japanese coastal waters. Phycologia 44:369–383
Neustupa J, Ne ˘mkova ´ Y, Vesela ´ J, Steinova ´ J, S ˇ kaloud P (2013)
Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a
novel genus of coccoid green algae from subaerial corticolous
biofilms. Phycologia 52(5):411–421
Nicolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP,
Aleshin VV, Petrov NB, Pawlowski J (2004) The twilight of
Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid
eukaryotes. Proc Natl Acad Sci U S A 101(21):8066–8071
Noda S et al (2006) Identification and characterization of
ectosymbionts of distinct lineages in Bacteroidales attached to
flagellated protists in the gut of termites and a wood-feeding cockroach. Environ Microbiol 8:11–20
Not F et al (2007) Picobiliphytes: a marine picoplanctonic algal group
with unknown affinities to other Eukaryotes. Science 315:253–255
Nozaki H, Maruyama S, Matsuzaki M, Nakada T, Kato S, Misawa K
(2009) Phylogenetic position of Glaucophyta, green plants
(Archaeplastida) and Haptophyta (Chromalveolata) as deduced from
slowly evolving nuclear genes. Mol Phylogenet Evol 55:872–880
Obornı ´k M, Modry ´ D, Lukes ˇ M, Cernotı ´kova ´-Str ˇı ´brna ´ E, Cihla ´r ˇ J,
Tesar ˇova ´ M, Kotabova ´ E, Vancova ´ M, Pra ´s ˇil O, Lukes ˇ J (2012)
Morphology, ultrastructure and life cycle of Vitrella brassicaformis
n. sp., n. gen., a novel chromerid from the Great Barrier Reef.
Protist 163(2):306–323
Okamoto N, Inouye I (2005) The Katablepharids are a distant sister
group of the Cryptophyta: a proposal for Katablepharidophyta
divisio nova/Katablepharida phylum novum based on SSU rDNA
and beta-tubulin phylogeny. Protist 156:163–179
Ota S, Ueda K, Ishida KI (2007) Norrisiella sphaerica gen. et sp. nov.,
a new coccoid Chlorarachniophyte from Baja California, Mexico.
J Plant Res 120:661–670
Ota S, Kudo A, Ishida KI (2011) Gymnochlora dimorpha sp. nov., a
new chlorarachnophyte with unique daughter cell behaviour.
Phycologia 50(3):317–326
Palmer JD, Soltis DE, Chase MW (2004) The plant tree of life: an
overview and some points of view. Am J Bot 91:1437–1445
Pasanen AL, Yli-Pietila K, Pasanen P, Kalliokoski P, Tarhanen J (1999)
Ergosterol content in various fungal species and biocontaminated
building materials. Appl Environ Microbiol 65:138–142
Paterson HL, Pesant S, Clode P, Knott B, Waite AM (2007) Systematics of a rare radiolarian – Coelodiceras spinosum Haecker
(Sarcodina: Actinopoda: Phaeodaria: Coelodendridae). Deep Sea
Res II 54:1094–1102
Patterson DJ (1989) Stramenopiles: chromophytes from a protistean
perspective. In: Green JC, Leadbeater BSC, Diver WL (eds) The
chromophyte algae. Problems and perspectives. Clarendon, Lonon,
pp 357–379
Pawlowski J et al (2012) CBOL Protist Working Group: barcoding
eukaryotic richness beyond the animal, plant, and fungal kingdoms.
PLoS Biol 10:e1001419
Pedro ´s-Alio ´ C (2003) Diversity of microorganisms. In: Vila ` M, Roda ` F,
Ros J (eds) Seminar on biodiversity and biological conservation.
Institut d’Estudis Catalans Publ, Barcelona, pp 339–353
Pellegrini L (1974) Origine et modifications ultrastructurales du
mate ´riel osmiophile contenu dans les physodes et dans certains
corps iridescents des cellules ve ´ge ´tatives apicales chez Cystoseira
stricta Sauvageau (Phe ´ophyce ´e, Fucale). C R Acad Sci
279:903–906
Peters AF, Mu ¨ller DG (1985) On the sexual reproduction of
Dictyosiphon foeniculaceus (Phaeophyceae, Dictyosiphonales).
Helgol Meeresunters 39:441–447
Pitombo LF, Teixeira VL, Kelecom A (1989) Feromo ˆnios sexuais
de algas pardas. Uma visa ˜o quimiosistema ´tica. Insula, Brazil
19(suppl):229–248
Prasad AHSK, Nienow JA, Livingstone RJ (1990) The genus
Cyclotella (Bacillariophyta) in Choctawhatchee Bay, Florida, with
special reference to C. striata and C. choctawhatcheeana sp. nov.
Phycologia 29:418–436
Puglisi E, Nicelli M, Capri E, Trevisan M, Del Re AAM (2003)
Cholesterol, b-sitosterol, ergosterol, and coprostanol in agricultural
soils. J Environ Qual 32:466–471
Raven PH, Evert RF, Eichhorn SE, Bouharmont J (2000) Biologie
ve ´ge ´tale. De Boeck publication, p 968
Raven JA, Waite AM (2004) The evolution of silicification in
diatoms: inescapable sinking and sinking as escape? New Phytol
162:45–61
Robert D, Catesson AM (1990) Biologie ve ´ge ´tale, tome 2. Caracte ´ristiques et strate ´gie e ´volutive des plantes. Organisation ve ´ge ´tative.
Doin publication, Paris, pp viii + 256
Rodriguez F, Derelle E, Guillou L, Le Gall F, Vaulot D, Moreau H
(2005) Ecotype diversity in the marine picoeukaryote Ostreococcus
(Chlorophyta, Prasinophyceae). Environ Microbiol 7:853–859
Rokas A (2006) Genomics and the tree of life. Science 313:1897–1898
Sakaguchi M, Inagaki Y, Hashimoto T (2007) Centrohelida is still
searching for a phylogenetic home: analyses of seven
Raphidiophrys contractilis genes. Gene 405(1–2):47–54
256
C.-F. Boudouresque