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Polzin KM, McKay LL (1991) Identification, DNA sequence, and
distribution of IS981, a new, high-copy-number insertion sequence
in lactococci. Appl Environ Microbiol 57:734–743
Rahat M, Ben Ishac-Monselise E (1979) Photobiology of the chloroplast hosting mollusc Elysia timida (Opisthobranchia). J Exp Mar
Biol Ecol 79:225–233
Raoult D, Audio S, Robert C, Abergel C, Ernesto P, Ogata H, La Scola
B, Suzan M, Claverie JM (2004) The 1.2-megabase genome
sequence of Mimivirus. Science 306:1344–1350
Raven PH (1970) A multiple origin for plastids and mitochondria.
Science 169:641–646
Raven JA, Richardson K (1984) Dinophyte flagella: a cost-benefit
analysis. New Phytol 98:259–276
Raven JA, Waite AM (2004) The evolution of silicification in diatoms:
inescapable sinking and sinking as escape? New Phytol 162:45–61
Reith M, Munholland J (1993) A high-resolution gene map of the
chloroplast genome of the red alga Porphyra purpurea. Plant Cell
5:465–475
Rivera MC, Lake JA (2004) The ring of life provides evidence for a
genome fusion origin of eukaryotes. Nature 431:152–155
Rumpho ME, Summer EJ, Manhart JR (2000) Solar-powered sea slugs.
Mollusc/algal chloroplast symbiosis. Plant Physiol 123:29–38
Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS,
Bhattacharya D, Moustafa A, Manhart JR (2008) Horizontal gene
transfer of the algal nuclear gene psbO to the photosynthetic sea slug
Elysia chlorotica. Proc Natl Acad Sci U S A 105(46):17867–17871
Santini S, Jeudy S, Bartoli J, Poirot O, Lescot M, Abergel C, Barbe V,
Wommack KE, Noordeloos AAM, Brussaard CPD, Claverie JM
(2013) The genome of Phaeocystis globosa virus PgV-16T highlights
the common ancestry of the largest known DNA viruses infecting
eukaryotes. Proc Natl Acad Sci U S A 110(26):10800–10805
Schulz HN, Brinkhoff T, Ferdelman TG, Herna ´ndez Marine ´ M, Teske
A, Jørgensen BB (1999) Dense populations of a giant sulfur bacterium in Namibian shelf sediments. Science 284:493–495
Selga T, Selga M, Gobin ¸s ˇ V, Ozolin ¸a A (2010) Plastid-nuclear
complexes: permanent structures in photosynthesizing tissues of
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Smith M, Hansen J (2007) Interaction between Mesodinium rubrum
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Mar Ecol Prog Ser 338:61–70
Stacey G, Bottomley PJ, Van Baalen C, Tabita FR (1979) Control of
heterocyst and nitrogenase synthesis in cyanobacteria. J Bacteriol
137:321–326
Stanier RY (1974) Division I, the Cyanobacteria. In: Buchanan RE, et
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Williams & Wilkins Co, Baltimore
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revisited : convergent evolution in organellar genome content. J
Phycol 39:95–105
Turner S, Pryer KM, Miao VP, Palmer JD (1999) Investigating deep
phylogenetic relationships among cyanobacteria and plastids by small
subunit rRNA sequence analysis. J Eukaryot Microbiol 46:327–338
Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RHY, Aerts A,
Arredondo FD, Baxter L, Bensasson D, Beynon JL et al (2006)
Phytophthora genome sequences uncover evolutionary origins and
mechanisms of pathogenesis. Science 313:1261–1266
Vaulot D, Eikrem W, Viprey M, Moreau H (2008) The diversity of
small eukaryotic phytoplankton (
Waggoner B (2001) Eukaryotes and multicells: origin. In: Encyclopedia
of life sciences. Macmillan Publishing Ltd, Basingstoke, pp 1–9
Williams SI, Walker DI (1999) Mesoherbivore-macroalagal
interactions: feeding ecology of sacoglossan sea slugs (Mollusca,
Opisthobranchia) and their effects on their food algae. Oceanogr
Mar Biol Annu Rev 37:87–128
Woese C (1977) Endosymbionts and mitochondrial origins. J Mol Evol
10:39–96
Woese CR, Olsen GJ (1986) Archaebacterial phylogeny: perspectives
on the urkingdoms. Syst Appl Microbiol 7:161–177
Worden AZ, Nolan JK, Palenik B (2004) Assessing the dynamics and
ecology of marine picophytoplankton: the importance of the
eukaryotic component. Limnol Oceanogr 49:168–179
Yoosuf N et al (2012) Related giant viruses in distant locations and
different habitats: Acanthamoeba polyphaga Moumouvirus
represents a third lineage of the Mimiviridae that is close to the
megavirus lineage. Gen Biol Evol 4:1324–1330
Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, et Vogel HJ (eds) Evolving genes
and proteins. Academic, New York, pp 97–166
144
C.-F. Boudouresque et al.
Genet 21:101–108
Oltmanns F (1904) Morphologie und Biologie der Algen. Erster Band.
Gustav Fischer, Jena
Pennisi E (2006) Plant wannabes. Science 313:1229
Polzin KM, McKay LL (1991) Identification, DNA sequence, and
distribution of IS981, a new, high-copy-number insertion sequence
in lactococci. Appl Environ Microbiol 57:734–743
Rahat M, Ben Ishac-Monselise E (1979) Photobiology of the chloroplast hosting mollusc Elysia timida (Opisthobranchia). J Exp Mar
Biol Ecol 79:225–233
Raoult D, Audio S, Robert C, Abergel C, Ernesto P, Ogata H, La Scola
B, Suzan M, Claverie JM (2004) The 1.2-megabase genome
sequence of Mimivirus. Science 306:1344–1350
Raven PH (1970) A multiple origin for plastids and mitochondria.
Science 169:641–646
Raven JA, Richardson K (1984) Dinophyte flagella: a cost-benefit
analysis. New Phytol 98:259–276
Raven JA, Waite AM (2004) The evolution of silicification in diatoms:
inescapable sinking and sinking as escape? New Phytol 162:45–61
Reith M, Munholland J (1993) A high-resolution gene map of the
chloroplast genome of the red alga Porphyra purpurea. Plant Cell
5:465–475
Rivera MC, Lake JA (2004) The ring of life provides evidence for a
genome fusion origin of eukaryotes. Nature 431:152–155
Rumpho ME, Summer EJ, Manhart JR (2000) Solar-powered sea slugs.
Mollusc/algal chloroplast symbiosis. Plant Physiol 123:29–38
Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS,
Bhattacharya D, Moustafa A, Manhart JR (2008) Horizontal gene
transfer of the algal nuclear gene psbO to the photosynthetic sea slug
Elysia chlorotica. Proc Natl Acad Sci U S A 105(46):17867–17871
Santini S, Jeudy S, Bartoli J, Poirot O, Lescot M, Abergel C, Barbe V,
Wommack KE, Noordeloos AAM, Brussaard CPD, Claverie JM
(2013) The genome of Phaeocystis globosa virus PgV-16T highlights
the common ancestry of the largest known DNA viruses infecting
eukaryotes. Proc Natl Acad Sci U S A 110(26):10800–10805
Schulz HN, Brinkhoff T, Ferdelman TG, Herna ´ndez Marine ´ M, Teske
A, Jørgensen BB (1999) Dense populations of a giant sulfur bacterium in Namibian shelf sediments. Science 284:493–495
Selga T, Selga M, Gobin ¸s ˇ V, Ozolin ¸a A (2010) Plastid-nuclear
complexes: permanent structures in photosynthesizing tissues of
vascular plants. Environ Exp Biol 8:85–92
Smith M, Hansen J (2007) Interaction between Mesodinium rubrum
and its prey: importance of prey concentration, irradiance and pH.
Mar Ecol Prog Ser 338:61–70
Stacey G, Bottomley PJ, Van Baalen C, Tabita FR (1979) Control of
heterocyst and nitrogenase synthesis in cyanobacteria. J Bacteriol
137:321–326
Stanier RY (1974) Division I, the Cyanobacteria. In: Buchanan RE, et
Gibbons NE (eds) Bergey’s manual of determinative bacteriology.
Williams & Wilkins Co, Baltimore
Stiller JW, Reel DC, Johnson JC (2003) A single origin of plastids
revisited : convergent evolution in organellar genome content. J
Phycol 39:95–105
Turner S, Pryer KM, Miao VP, Palmer JD (1999) Investigating deep
phylogenetic relationships among cyanobacteria and plastids by small
subunit rRNA sequence analysis. J Eukaryot Microbiol 46:327–338
Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RHY, Aerts A,
Arredondo FD, Baxter L, Bensasson D, Beynon JL et al (2006)
Phytophthora genome sequences uncover evolutionary origins and
mechanisms of pathogenesis. Science 313:1261–1266
Vaulot D, Eikrem W, Viprey M, Moreau H (2008) The diversity of
small eukaryotic phytoplankton (
Waggoner B (2001) Eukaryotes and multicells: origin. In: Encyclopedia
of life sciences. Macmillan Publishing Ltd, Basingstoke, pp 1–9
Williams SI, Walker DI (1999) Mesoherbivore-macroalagal
interactions: feeding ecology of sacoglossan sea slugs (Mollusca,
Opisthobranchia) and their effects on their food algae. Oceanogr
Mar Biol Annu Rev 37:87–128
Woese C (1977) Endosymbionts and mitochondrial origins. J Mol Evol
10:39–96
Woese CR, Olsen GJ (1986) Archaebacterial phylogeny: perspectives
on the urkingdoms. Syst Appl Microbiol 7:161–177
Worden AZ, Nolan JK, Palenik B (2004) Assessing the dynamics and
ecology of marine picophytoplankton: the importance of the
eukaryotic component. Limnol Oceanogr 49:168–179
Yoosuf N et al (2012) Related giant viruses in distant locations and
different habitats: Acanthamoeba polyphaga Moumouvirus
represents a third lineage of the Mimiviridae that is close to the
megavirus lineage. Gen Biol Evol 4:1324–1330
Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, et Vogel HJ (eds) Evolving genes
and proteins. Academic, New York, pp 97–166
144
C.-F. Boudouresque et al.