Erster Theil, Systematische Phylogenie der Protisten und Pflanzen.
Georg Reimer, Berlin/Allemagne
Hansen PJ, Fenchel T (2006) The bloom-forming ciliate Mesodinium
rubrum harbours a single permanent endosymbiont. Mar Biol Res
2:169–177
Ha ¨ring M, Vestergaard G, Rachel R, Chen L, Garrett RA, Prangishvili D
(2005) Independent virus development outside a host. Nature
436:1101–1102
He ´bant C (1977) The conducting tissues of bryophytes. Bryophytorum
Bibl 10:1–157 + 80 pl. h.t
Hrdy I, Hirt RP, Dolezal P, Bardonova ´ L, Foster PG, Tachezy J,
Embley TM (2004) Trichomonas hydrogenosomes contain the
NADH dehydrogenase module of mitochondrial complex I. Nature
432:618–622
Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO
(2002) A new phylum of Archaea represented by a nanosized
hyperthermophilic symbiont. Nature 417:63–67
Jeon KW (1972) Development of cellular dependence on infective
organisms: microsurgical studies in amoebas. Science
176:1122–1123
Jeon KW (1991) Amoeba and x-bacteria: symbiont acquisition and
possible species change. In: Margulis L, et Fester R (eds) Symbiosis
as a source of evolutionary innovation: speciation and morphogenesis. MIT Press, Cambridge, USA, pp 118–131
Jeon KW (1995) Bacterial endosymbiosis in amoebae. Trends Cell Biol
5:137–140
Jeon KW, Jeon MS (1976) Endosymbiosis in amoeba : recently
established endosymbionts have become required cytoplasmic
components. J Cell Physiol 89(2):337–344
Johnson MD, Oldach D, Delwiche CF, Stoecker DK (2007) Retention
of transcriptionally active cryptophyte nuclei by the ciliate
Myrionecta rubra. Nature 445:426–428
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y,
Miyajima N, Hirosawa M, Sasamoto S, Kimura T, Hosouchi T,
Matsuno A, Muraki A, Nakazaki N, Naruo K, Okamura S, Shimpo
S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M,
Tabata S (1996) Sequence analysis of genome of the unicellular
cyanobacterium Synechocystis sp. strain PCC6803. II Sequence
determination of the entire genome and assignment of potential
protein-coding regions. DNA Res 3:109–116, 185–209
Kim GH, Yoon M, Klotchkova TA (2005) A moving mat: phototaxis in
the filamentous green algae Spirogyra (Chlorophyta,
Zygnemataceae). J Phycol 41:232–237
Kimura M (1968) Evolutionary rate at the molecular level. Nature
217:624–626
Ko ¨hler S, Delwiche CF, Denny PW, Tilney LG, Webster P, Wilson
RJM, Palmer JD, Roos DS (1997) A plastid of probable green algal
origin in Apicomplexan parasites. Science 275:1485–1489
Kozo-Polyanski BM (1924) A new principle of biology. Essay on the
theory of symbiogenesis. Moscou, Russie (en russe)
Kumar S (2005) Molecular clocks: four decades of evolution. Nat Rev
Genet 6(8):654–662
La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X,
Drancourt M, Birtles R, Claverie JM, Raoult D (2003) A giant
virus in amoebae. Science 299:2033
Lamarck JB (1809) Philosophie zoologique. Dentu, Paris
Lawrence JG, Ochman H (1998) Molecular archaeology of the Escherichia
coli genome. Proc Natl Acad Sci U S A 95(16):9413–9417
Leander BS, Saldarriaga JF, Keeling PJ (2002) Surface morphology of
the marine parasite Haplozoon axiothellae Siebert (Dinoflagellata).
Eur J Protistol 38:287–297
Lecointre G, Le Guyader H (2001) Classification phyloge ´ne ´tique du
vivant. Belin Publishing, Paris
Lecointre G, Le Guyader H (2006) Classification phyloge ´ne ´tique du
vivant, 3rd edn. Belin Publishing, Paris
Lee RE, Kugrens P (2000) Ancient atmospheric CO 2 and the timing
of evolution of secondary endosymbioses. Phycologia 39(2):
167–172
Lewin RA (1975) A marine Synechocystis (Cyanophyta,
Chlorococcales) epizoic on ascidians. Phycologia 14:153–160
Lewin RA (1976) Prochlorophyta as a proposed new division of algae.
Nature 261:687–698
Lewin RA, Withers N (1975) Extraordinary pigment composition of a
prokaryotic alga. Nature 256:735–737
Linnaeus C (1753) Species plantarum, exhibentes plantas rite cognitas,
ad genera relatas, cum differentiis specificis, nominibus trivialibus,
synonymis selectis, locis natalibus, secundum systema sexuale
digestas. Holmiae, Impensis Laurentii Salvii, Stockholm
Lo ´pez-Garcı ´a P, Rodrı ´guez-Valera F, Pedro ´s-Alio C, Moreira D (2001)
Unexpected diversity of small eukaryotes in deep-sea Antarctic
plankton. Nature 409:603–607
Margulis L (1970) Origin of eukaryotic cells. Yale University Press,
New Haven/London
Margulis L (1980) Undulipodium, flagella and cilia. BioSystems
12(1–2):105–108
Margulis L (1981) Symbiosis in cell evolution. W.H. Freeman, San
Francisco
Margulis L, Dolan MF, Guerrero R (2000) The chimeric eukaryote:
origin of the nucleus from the karyomastigont in amitochondriate
protists. Proc Natl Acad Sci U S A 97:6954–6959
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister
D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis
of Arabidopsis, cyanobacterial, and chloroplast genomes reveals
plastid phylogeny and thousands of cyanobacterial genes in the
nucleus. Proc Natl Acad Sci U S A 99:12246–12251
McCutcheon JP, Moran NA (2011) Extreme genome reduction in
symbiotic bacteria. Nat Rev Microbiol, 14 pp
McFadden GI (2001) Primary and secondary endosymbiosis and the
origin of plastids. J Phycol 37:951–959
McFadden GI, Waller RF (1997) Plastids in parasites of humans.
Bioessays 19(11):1033–1040
Medlin LK, Kaczmarska I (2004) Evolution of the diatoms: V.
Morphological and cytological support for the major clades and a
taxonomic revision. Phycologia 43(3):245–270
Mereschkowsky C (1905) €
UberNatur und Ursprung der
Chromatophoren im Pflanzenreiche. Biol Zentralbl 25:593–604
Mereschkowsky C (1910) Theorie der zwei Plasmaarten als Grundlage
der Symbiogenesis, einer neuen Lehre von der Entstehung der
Organismen. Biol Zentralbl 30:278–367
Meyerowitz EM (2002) Plants compared to animals: the broadest
comparative study of development. Science 295:1482–1485
Monier A, Claverie JM, Ogata H (2008) Taxonomic distribution of
large DNA viruses in the sea. Genome Biol 9:R106
Moon-van der Staay SY, De Wachter R, Vaulot D (2001) Oceanic 18S
rDNA sequences from picoplankton reveal unsuspected eukaryotic
diversity. Nature 409:607–610
Moustafa A, Beszteri B, Maier UW, Bowler C, Valentin K,
Bhattacharya D (2009) Genomic footprints of a cryptic plastid
endosymbiosis in Diatoms. Science 324:1724–1726
Nakabachi A, Yamashita A, Toh H, Ishikawa H, Dunbar HE, Moran
NA, Hattori M (2006) The 160-kilobase genome of the bacterial
endosymbiont Carsonella. Science 314:267
Nakayama T, Ishida K (2005) Another primary endosymbiosis?
Origin of Paulinella chromatophora cyanelles. Phycologia 44(4):74
Nicolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP,
Aleshin VV, Petrov NB, Pawlowski J (2004) The twilight of
Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid
eukaryotes. Proc Natl Acad Sci U S A 101(21):8066–8071
Nishikawa M, Suzuki K, Yoshida K (1992) DNA integration into
recipient yeast chromosomes by trans-kingdom conjugation
5 Systematic and Evolution of Microorganisms: General Concepts
143
Georg Reimer, Berlin/Allemagne
Hansen PJ, Fenchel T (2006) The bloom-forming ciliate Mesodinium
rubrum harbours a single permanent endosymbiont. Mar Biol Res
2:169–177
Ha ¨ring M, Vestergaard G, Rachel R, Chen L, Garrett RA, Prangishvili D
(2005) Independent virus development outside a host. Nature
436:1101–1102
He ´bant C (1977) The conducting tissues of bryophytes. Bryophytorum
Bibl 10:1–157 + 80 pl. h.t
Hrdy I, Hirt RP, Dolezal P, Bardonova ´ L, Foster PG, Tachezy J,
Embley TM (2004) Trichomonas hydrogenosomes contain the
NADH dehydrogenase module of mitochondrial complex I. Nature
432:618–622
Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO
(2002) A new phylum of Archaea represented by a nanosized
hyperthermophilic symbiont. Nature 417:63–67
Jeon KW (1972) Development of cellular dependence on infective
organisms: microsurgical studies in amoebas. Science
176:1122–1123
Jeon KW (1991) Amoeba and x-bacteria: symbiont acquisition and
possible species change. In: Margulis L, et Fester R (eds) Symbiosis
as a source of evolutionary innovation: speciation and morphogenesis. MIT Press, Cambridge, USA, pp 118–131
Jeon KW (1995) Bacterial endosymbiosis in amoebae. Trends Cell Biol
5:137–140
Jeon KW, Jeon MS (1976) Endosymbiosis in amoeba : recently
established endosymbionts have become required cytoplasmic
components. J Cell Physiol 89(2):337–344
Johnson MD, Oldach D, Delwiche CF, Stoecker DK (2007) Retention
of transcriptionally active cryptophyte nuclei by the ciliate
Myrionecta rubra. Nature 445:426–428
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y,
Miyajima N, Hirosawa M, Sasamoto S, Kimura T, Hosouchi T,
Matsuno A, Muraki A, Nakazaki N, Naruo K, Okamura S, Shimpo
S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M,
Tabata S (1996) Sequence analysis of genome of the unicellular
cyanobacterium Synechocystis sp. strain PCC6803. II Sequence
determination of the entire genome and assignment of potential
protein-coding regions. DNA Res 3:109–116, 185–209
Kim GH, Yoon M, Klotchkova TA (2005) A moving mat: phototaxis in
the filamentous green algae Spirogyra (Chlorophyta,
Zygnemataceae). J Phycol 41:232–237
Kimura M (1968) Evolutionary rate at the molecular level. Nature
217:624–626
Ko ¨hler S, Delwiche CF, Denny PW, Tilney LG, Webster P, Wilson
RJM, Palmer JD, Roos DS (1997) A plastid of probable green algal
origin in Apicomplexan parasites. Science 275:1485–1489
Kozo-Polyanski BM (1924) A new principle of biology. Essay on the
theory of symbiogenesis. Moscou, Russie (en russe)
Kumar S (2005) Molecular clocks: four decades of evolution. Nat Rev
Genet 6(8):654–662
La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X,
Drancourt M, Birtles R, Claverie JM, Raoult D (2003) A giant
virus in amoebae. Science 299:2033
Lamarck JB (1809) Philosophie zoologique. Dentu, Paris
Lawrence JG, Ochman H (1998) Molecular archaeology of the Escherichia
coli genome. Proc Natl Acad Sci U S A 95(16):9413–9417
Leander BS, Saldarriaga JF, Keeling PJ (2002) Surface morphology of
the marine parasite Haplozoon axiothellae Siebert (Dinoflagellata).
Eur J Protistol 38:287–297
Lecointre G, Le Guyader H (2001) Classification phyloge ´ne ´tique du
vivant. Belin Publishing, Paris
Lecointre G, Le Guyader H (2006) Classification phyloge ´ne ´tique du
vivant, 3rd edn. Belin Publishing, Paris
Lee RE, Kugrens P (2000) Ancient atmospheric CO 2 and the timing
of evolution of secondary endosymbioses. Phycologia 39(2):
167–172
Lewin RA (1975) A marine Synechocystis (Cyanophyta,
Chlorococcales) epizoic on ascidians. Phycologia 14:153–160
Lewin RA (1976) Prochlorophyta as a proposed new division of algae.
Nature 261:687–698
Lewin RA, Withers N (1975) Extraordinary pigment composition of a
prokaryotic alga. Nature 256:735–737
Linnaeus C (1753) Species plantarum, exhibentes plantas rite cognitas,
ad genera relatas, cum differentiis specificis, nominibus trivialibus,
synonymis selectis, locis natalibus, secundum systema sexuale
digestas. Holmiae, Impensis Laurentii Salvii, Stockholm
Lo ´pez-Garcı ´a P, Rodrı ´guez-Valera F, Pedro ´s-Alio C, Moreira D (2001)
Unexpected diversity of small eukaryotes in deep-sea Antarctic
plankton. Nature 409:603–607
Margulis L (1970) Origin of eukaryotic cells. Yale University Press,
New Haven/London
Margulis L (1980) Undulipodium, flagella and cilia. BioSystems
12(1–2):105–108
Margulis L (1981) Symbiosis in cell evolution. W.H. Freeman, San
Francisco
Margulis L, Dolan MF, Guerrero R (2000) The chimeric eukaryote:
origin of the nucleus from the karyomastigont in amitochondriate
protists. Proc Natl Acad Sci U S A 97:6954–6959
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister
D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis
of Arabidopsis, cyanobacterial, and chloroplast genomes reveals
plastid phylogeny and thousands of cyanobacterial genes in the
nucleus. Proc Natl Acad Sci U S A 99:12246–12251
McCutcheon JP, Moran NA (2011) Extreme genome reduction in
symbiotic bacteria. Nat Rev Microbiol, 14 pp
McFadden GI (2001) Primary and secondary endosymbiosis and the
origin of plastids. J Phycol 37:951–959
McFadden GI, Waller RF (1997) Plastids in parasites of humans.
Bioessays 19(11):1033–1040
Medlin LK, Kaczmarska I (2004) Evolution of the diatoms: V.
Morphological and cytological support for the major clades and a
taxonomic revision. Phycologia 43(3):245–270
Mereschkowsky C (1905) €
UberNatur und Ursprung der
Chromatophoren im Pflanzenreiche. Biol Zentralbl 25:593–604
Mereschkowsky C (1910) Theorie der zwei Plasmaarten als Grundlage
der Symbiogenesis, einer neuen Lehre von der Entstehung der
Organismen. Biol Zentralbl 30:278–367
Meyerowitz EM (2002) Plants compared to animals: the broadest
comparative study of development. Science 295:1482–1485
Monier A, Claverie JM, Ogata H (2008) Taxonomic distribution of
large DNA viruses in the sea. Genome Biol 9:R106
Moon-van der Staay SY, De Wachter R, Vaulot D (2001) Oceanic 18S
rDNA sequences from picoplankton reveal unsuspected eukaryotic
diversity. Nature 409:607–610
Moustafa A, Beszteri B, Maier UW, Bowler C, Valentin K,
Bhattacharya D (2009) Genomic footprints of a cryptic plastid
endosymbiosis in Diatoms. Science 324:1724–1726
Nakabachi A, Yamashita A, Toh H, Ishikawa H, Dunbar HE, Moran
NA, Hattori M (2006) The 160-kilobase genome of the bacterial
endosymbiont Carsonella. Science 314:267
Nakayama T, Ishida K (2005) Another primary endosymbiosis?
Origin of Paulinella chromatophora cyanelles. Phycologia 44(4):74
Nicolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP,
Aleshin VV, Petrov NB, Pawlowski J (2004) The twilight of
Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid
eukaryotes. Proc Natl Acad Sci U S A 101(21):8066–8071
Nishikawa M, Suzuki K, Yoshida K (1992) DNA integration into
recipient yeast chromosomes by trans-kingdom conjugation
5 Systematic and Evolution of Microorganisms: General Concepts
143