7 Genomic Approaches in Aquaculture and Fisheries
265
Badariotti F, Lelong C, Dubos MP et al (2007) Characterization of chitinase-like proteins (CgClp1 and Cg-Clp2) involved in immune defence of the mollusc Crassostrea gigas. FEBS J
274:3646–3654
Bai J, Solberg C, Fernandes JM et al (2007) Profiling of maternal and developmental-stage specific
mRNA transcripts in Atlantic halibut Hippoglossus hippoglossus. Gene 386:202–210
Baker CS, Cooke JG, Lavery S et al (2007) Estimating the number of whales entering trade using
DNA profiling and capture-recapture analysis of market products. Mol Ecol 16:2617–2626
Barrett RDH, Rogers SM, Schluter D (2008) Natural selection on a major armor gene in threespine
stickleback. Science 322:255–257
Batista FM, Arzul I, Pepin JF et al (2007) Detection of ostreid herpesvirus 1 DNA by PCR in
bivalve molluscs: a critical review. J Virol Methods 139:1–11
Battershill JM (2005) Toxicogenomics: regulatory perspective on current position. Hum Exp
Toxicol 24:35–40
Beaumont MA, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population
structure. Proc R Soc B-Biol Sci 263:1619–1626
Beaumont MA (2005) Adaptation and speciation: what can F-st tell us?. Trends Ecol Evol 20:
435–440
Bencze-Røra AM, Regost C, Lampe J (2003) Liquid holding capacity, texture and fatty acid profile
of smoked fillets of Atlantic salmon fed diets containing fish oil or soybean oil. Food Res Int
36:231–239
Bernatchez L, Landry C (2003) MHC studies in nonmodel vertebrates: what have we learned about
natural selection in 15 years?. J Evolution Biol 16:363–377
Bettencourt R, Roch P, Stefanni S et al (2007) Deep sea immunity: Unveiling immune constituents
from the hydrothermal vent mussel Bathymodiolus azoricus. Mar Environ Res 64:108–127
Bierne N, Tsitrone A, David P (2000) An inbreeding model of associative overdominance during
a population bottleneck. Genetics 155:1981–1990
Bílek K, Knoll A, Stratil A et al (2008) Analysis of mRNA expression of CNN3, DCN, FBN2,
POSTN, SPARC and YWHAQ genes in porcine foetal and adult skeletal muscles. Czech J
Anim Sci 53:181–186
Birney E, Stamatoyannopoulos JA, Dutta A et al (2007) Identification and analysis of functional
elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799–816
Blackstone GM, Nordstrom JL, Vickery MC et al (2003) Detection of pathogenic Vibrio parahaemolyticus in oyster enrichments by real time PCR. J Microbiol Methods 53:149–155
Blanco G, Borrell YJ, Bernardo D (2007) The use of microsatellites for optimizing broodstocks in
a hatchery of gilthead seabream (Sparus aurata L.). Aquaculture 272:S246
Boesen HT, Pedersen K, Larsen JL et al (1999) Vibrio anguillarum resistance to rainbow trout
(Oncorhynchus mykiss) serum: role of O-antigen structure of lipopolysaccharide. Infect Immun
67:294–301
Bonin A (2008) Population genomics: a new generation of genome scans to bridge the gap with
functional genomics. Mol Ecol 17:3583–3584
Borrell YJ, Alvarez J, Vazquez E et al (2004) Applying microsatellites to the management of
farmed turbot stocks (Scophthalmus maximus L.) in hatcheries. Aquaculture 241:133–150
Bouck A, Vision T (2007) The molecular ecologist’s guide to expressed sequence tags. Mol Ecol
16:907–924
Boudry P, Collet B, Cornette F et al (2002) High variance in reproductive success of the Pacific
oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of
multifactorial crosses. Aquaculture 204:283–296
Boudry P, Dégremont L, Haffray P (2008) The genetic basis of summer mortality in Pacific oyster spat and potential for improving survival by selective breeding in France. In: Samain JF,
McCombie H (eds) Summer mortality of Pacific oyster Crassostrea gigas – The morest project,
Quae edn. Versailles, France
Boughman JW (2001) Divergent sexual selection enhances reproductive isolation in sticklebacks.
Nature 411:944–948
265
Badariotti F, Lelong C, Dubos MP et al (2007) Characterization of chitinase-like proteins (CgClp1 and Cg-Clp2) involved in immune defence of the mollusc Crassostrea gigas. FEBS J
274:3646–3654
Bai J, Solberg C, Fernandes JM et al (2007) Profiling of maternal and developmental-stage specific
mRNA transcripts in Atlantic halibut Hippoglossus hippoglossus. Gene 386:202–210
Baker CS, Cooke JG, Lavery S et al (2007) Estimating the number of whales entering trade using
DNA profiling and capture-recapture analysis of market products. Mol Ecol 16:2617–2626
Barrett RDH, Rogers SM, Schluter D (2008) Natural selection on a major armor gene in threespine
stickleback. Science 322:255–257
Batista FM, Arzul I, Pepin JF et al (2007) Detection of ostreid herpesvirus 1 DNA by PCR in
bivalve molluscs: a critical review. J Virol Methods 139:1–11
Battershill JM (2005) Toxicogenomics: regulatory perspective on current position. Hum Exp
Toxicol 24:35–40
Beaumont MA, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population
structure. Proc R Soc B-Biol Sci 263:1619–1626
Beaumont MA (2005) Adaptation and speciation: what can F-st tell us?. Trends Ecol Evol 20:
435–440
Bencze-Røra AM, Regost C, Lampe J (2003) Liquid holding capacity, texture and fatty acid profile
of smoked fillets of Atlantic salmon fed diets containing fish oil or soybean oil. Food Res Int
36:231–239
Bernatchez L, Landry C (2003) MHC studies in nonmodel vertebrates: what have we learned about
natural selection in 15 years?. J Evolution Biol 16:363–377
Bettencourt R, Roch P, Stefanni S et al (2007) Deep sea immunity: Unveiling immune constituents
from the hydrothermal vent mussel Bathymodiolus azoricus. Mar Environ Res 64:108–127
Bierne N, Tsitrone A, David P (2000) An inbreeding model of associative overdominance during
a population bottleneck. Genetics 155:1981–1990
Bílek K, Knoll A, Stratil A et al (2008) Analysis of mRNA expression of CNN3, DCN, FBN2,
POSTN, SPARC and YWHAQ genes in porcine foetal and adult skeletal muscles. Czech J
Anim Sci 53:181–186
Birney E, Stamatoyannopoulos JA, Dutta A et al (2007) Identification and analysis of functional
elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799–816
Blackstone GM, Nordstrom JL, Vickery MC et al (2003) Detection of pathogenic Vibrio parahaemolyticus in oyster enrichments by real time PCR. J Microbiol Methods 53:149–155
Blanco G, Borrell YJ, Bernardo D (2007) The use of microsatellites for optimizing broodstocks in
a hatchery of gilthead seabream (Sparus aurata L.). Aquaculture 272:S246
Boesen HT, Pedersen K, Larsen JL et al (1999) Vibrio anguillarum resistance to rainbow trout
(Oncorhynchus mykiss) serum: role of O-antigen structure of lipopolysaccharide. Infect Immun
67:294–301
Bonin A (2008) Population genomics: a new generation of genome scans to bridge the gap with
functional genomics. Mol Ecol 17:3583–3584
Borrell YJ, Alvarez J, Vazquez E et al (2004) Applying microsatellites to the management of
farmed turbot stocks (Scophthalmus maximus L.) in hatcheries. Aquaculture 241:133–150
Bouck A, Vision T (2007) The molecular ecologist’s guide to expressed sequence tags. Mol Ecol
16:907–924
Boudry P, Collet B, Cornette F et al (2002) High variance in reproductive success of the Pacific
oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of
multifactorial crosses. Aquaculture 204:283–296
Boudry P, Dégremont L, Haffray P (2008) The genetic basis of summer mortality in Pacific oyster spat and potential for improving survival by selective breeding in France. In: Samain JF,
McCombie H (eds) Summer mortality of Pacific oyster Crassostrea gigas – The morest project,
Quae edn. Versailles, France
Boughman JW (2001) Divergent sexual selection enhances reproductive isolation in sticklebacks.
Nature 411:944–948