264
M.L. Cancela et al.
We may conclude this overview on the population genomics of bony fishes with
the observation that the understanding of evolutionary processes in natural and
cultured populations is expected to increase in the near future. This will facilitate
sustainable management, hopefully assisting to curb global overfishing and assure
that the growing world population continues to have fair access to fish protein.
Acknowledgments The inspiration for this chapter originates from the EU-FP6 Network of
Excellence Marine Genomics Europe (GOCE-CT-2004-505403) and the EU-FP6 STREP projects
Combined genetic and functional genomic approaches for stress and disease resistance markerassisted selection in fish and shellfish (Aquafirst; STREP-2004-513692), Fisheries induced
evolution (FinE; STREP-2007-44276) and EU-FP7 KBBE-2007-1.2-14 project The structure of
fish populations and traceability of fish and fish products (FishPopTrace; KBBE-2007-1.2-14).
References
Abee T, Van Schaik W, Siezen RJ (2004) Impact of genomics on microbial food safety. Trends
Biotechnol 22:653–660
Abollo E, Casas SM, Ceschia G et al (2006) Differential diagnosis of Perkinsus species by
polymerase chain reaction-restriction fragment length polymorphism assay. Mol Cell Probes
20:323–329
Adams A, Thompson KD (2006) Biotechnology offers revolution to fish health management.
Trends Biotechnol 24:201–205
Allam B, Paillard C, Auffret M et al (2006) Effects of the pathogenic Vibrio tapetis on defence
factors of susceptible and non-susceptible bivalve species: II. Cellular and biochemical changes
following in vivo challenge. Fish Shellfish Immunol 20:384–397
Allendorf FW, England PR, Luikart G et al (2008) Genetic effects of harvest on wild animal
populations. Trends Ecol Evol 23:327–337
Anderson EC, Garza JC (2006) The power of single-nucleotide polymorphisms for large-scale
parentage inference. Genetics 172:2567–2582
Andersson L, Georges M (2004) Domestic-animal genomics: deciphering the genetics of com-plex
traits. Nat Rev Genet 5:202–212
Araneda C, Neira R, Iturra P (2005) Identification of a dominant SCAR marker associated with
colour traits in Coho salmon (Oncorhynchus kisutch). Aquaculture 247:67–73
Arkush KD, Giese AR, Mendonca HL et al (2002) Resistance to three pathogens in the endangered
winter-run Chinook salmon (Oncorhynchus tshawytscha): effects of inbreeding and major
histocompatibility complex genotypes. Can J Fish Aquat Sci 59:966–975
Artamonova VS (2007) Genetic markers in population studies of Atlantic salmon Salmo salar L.:
Analysis of DNA sequences. Russ J Genet 43:341–353
Ascenso RMT, Leite RB, Afonso R et al (2007) Suppression-subtractive hybridization: A rapid and
inexpensive detection methodology for up-regulated Perkinsus olseni genes. Afr J Biochem Res
3:24–28
Athanassopoulou F, Billinis C, Prapas T (2004) Important disease conditions of newly cultured
species in intensive freshwater farms in Greece: first incidence of nodavirus infection in
Acipenser sp. Dis Aquat Organ 60:247–252
Audemard C, Ragone Calvo LM, Paynter KT et al (2006) Real-time PCR investigation of parasite
ecology: in situ determination of oyster parasite Perkinsus marinus transmission dynamics in
lower Chesapeake Bay. Parasitology 132:827–842
Bachère E, Gueguen Y, Gonzalez M et al (2004) Insights into the anti-microbial defense of
marine invertebrates: the penaeid shrimps and the oyster Crassostrea gigas. Immunol Rev 198:
149–168
M.L. Cancela et al.
We may conclude this overview on the population genomics of bony fishes with
the observation that the understanding of evolutionary processes in natural and
cultured populations is expected to increase in the near future. This will facilitate
sustainable management, hopefully assisting to curb global overfishing and assure
that the growing world population continues to have fair access to fish protein.
Acknowledgments The inspiration for this chapter originates from the EU-FP6 Network of
Excellence Marine Genomics Europe (GOCE-CT-2004-505403) and the EU-FP6 STREP projects
Combined genetic and functional genomic approaches for stress and disease resistance markerassisted selection in fish and shellfish (Aquafirst; STREP-2004-513692), Fisheries induced
evolution (FinE; STREP-2007-44276) and EU-FP7 KBBE-2007-1.2-14 project The structure of
fish populations and traceability of fish and fish products (FishPopTrace; KBBE-2007-1.2-14).
References
Abee T, Van Schaik W, Siezen RJ (2004) Impact of genomics on microbial food safety. Trends
Biotechnol 22:653–660
Abollo E, Casas SM, Ceschia G et al (2006) Differential diagnosis of Perkinsus species by
polymerase chain reaction-restriction fragment length polymorphism assay. Mol Cell Probes
20:323–329
Adams A, Thompson KD (2006) Biotechnology offers revolution to fish health management.
Trends Biotechnol 24:201–205
Allam B, Paillard C, Auffret M et al (2006) Effects of the pathogenic Vibrio tapetis on defence
factors of susceptible and non-susceptible bivalve species: II. Cellular and biochemical changes
following in vivo challenge. Fish Shellfish Immunol 20:384–397
Allendorf FW, England PR, Luikart G et al (2008) Genetic effects of harvest on wild animal
populations. Trends Ecol Evol 23:327–337
Anderson EC, Garza JC (2006) The power of single-nucleotide polymorphisms for large-scale
parentage inference. Genetics 172:2567–2582
Andersson L, Georges M (2004) Domestic-animal genomics: deciphering the genetics of com-plex
traits. Nat Rev Genet 5:202–212
Araneda C, Neira R, Iturra P (2005) Identification of a dominant SCAR marker associated with
colour traits in Coho salmon (Oncorhynchus kisutch). Aquaculture 247:67–73
Arkush KD, Giese AR, Mendonca HL et al (2002) Resistance to three pathogens in the endangered
winter-run Chinook salmon (Oncorhynchus tshawytscha): effects of inbreeding and major
histocompatibility complex genotypes. Can J Fish Aquat Sci 59:966–975
Artamonova VS (2007) Genetic markers in population studies of Atlantic salmon Salmo salar L.:
Analysis of DNA sequences. Russ J Genet 43:341–353
Ascenso RMT, Leite RB, Afonso R et al (2007) Suppression-subtractive hybridization: A rapid and
inexpensive detection methodology for up-regulated Perkinsus olseni genes. Afr J Biochem Res
3:24–28
Athanassopoulou F, Billinis C, Prapas T (2004) Important disease conditions of newly cultured
species in intensive freshwater farms in Greece: first incidence of nodavirus infection in
Acipenser sp. Dis Aquat Organ 60:247–252
Audemard C, Ragone Calvo LM, Paynter KT et al (2006) Real-time PCR investigation of parasite
ecology: in situ determination of oyster parasite Perkinsus marinus transmission dynamics in
lower Chesapeake Bay. Parasitology 132:827–842
Bachère E, Gueguen Y, Gonzalez M et al (2004) Insights into the anti-microbial defense of
marine invertebrates: the penaeid shrimps and the oyster Crassostrea gigas. Immunol Rev 198:
149–168