176
F. Raible and P.R.H. Steinmetz
Matus DQ et al (2007) FGF signaling in gastrulation and neural development in Nematostella
vectensis, an anthozoan cnidarian. Dev Genes Evol 217: 137–148
Mazza ME et al (2007) Genomic organization, gene structure, and developmental expression of
three clustered otx genes in the sea anemone Nematostella vectensis. J Exp Zoolog B Mol Dev
Evol 308: 494–506
McGinnis W et al (1984) A homologous protein-coding sequence in Drosophila homeotic genes
and its conservation in other metazoans. Cell 37: 403–408
McGinnis W and Krumlauf R. (1992) Homeobox genes and axial patterning. Cell 68: 283–302
Miller DJ, Ball EE (2005) Animal evolution: the enigmatic phylum placozoa revisited. Curr Biol
15: R26–R28
Miller DJ, and Ball EE (2008) Cryptic complexity captured: the Nematostella genome reveals its
secrets. Trends Genet 24: 1–4
Miller DJ et al (2005) Cnidarians and ancestral genetic complexity in the animal kingdom. Trends
Genet 21: 536–539
Monteiro AS et al (2006) A low diversity of ANTP class homeobox genes in Placozoa. Evol Dev
8: 174–182
Moroz LL et al (2006) Neuronal transcriptome of aplysia: neuronal compartments and circuitry.
Cell 127: 1453–1467
Mukherjee K, Bürglin TR (2007) Comprehensive analysis of animal TALE homeobox genes: new
conserved motifs and cases of accelerated evolution. J Mol Evol 65: 137–153
Nedelcu AM, Tan C (2007) Early diversification and complex evolutionary history of the p53 tumor
suppressor gene family. Dev Genes Evol 217: 801–806
Nielsen C (2001) Animal Evolution. Interrelationships of the Living Phyla. Oxford University
press, Oxford
Nielsen C (2004) Trochophora Larvae: Cell-Lineages, Ciliary Bands, and Body Regions. 1.
Annelida and Mollusca. J Exp Zool (Mol Dev Evol) 302B: 35–68
Nilsson DE et al (2005) Advanced optics in a jellyfish eye. Nature 435: 201–205
Pang K et al (2004) The ancestral role of COE genes may have been in chemoreception: evidence
from the development of the sea anemone, Nematostella vectensis (Phylum Cnidaria; Class
Anthozoa). Dev Genes Evol 214: 134–138
Pavlopoulos A, Averof M (2005) Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis. Proc Natl Acad Sci USA 102:
7888–7893
Pedersen RA (1971) DNA content, ribosomal gene multiplicity, and cell size in fish. J. Exp. Zool.
177: 65–78
Pennacchio LA et al (2006) In vivo enhancer analysis of human conserved non-coding sequences.
Nature 444: 499–502
Peterson KJ, Sperling EA (2007) Poriferan ANTP genes: primitively simple or secondarily
reduced? Evol Dev 9: 405–408
Philippe H et al (2009) Phylogenomics revives traditional views on deep animal relationships. Curr
Biol 19: 706–712
Piatigorsky J, Kozmik Z (2004) Cubozoan jellyfish: an Evo/Devo model for eyes and other sensory
systems. Int J Dev Biol 48: 719–729
Pincus D et al (2008) Evolution of the phospho-tyrosine signaling machinery in premetazoan
lineages. PNAS 105: 9680–9684
Prpic NM, Telford MJ (2008) Expression of homothorax and extradenticle mRNA in the legs of
the crustacean Parhyale hawaiensis: evidence for a reversal of gene expression regulation in
the pancrustacean lineage. Dev Genes Evol 218: 333–339
Prud’homme B et al (2007) Emerging principles of regulatory evolution. Proc Natl Acad Sci USA
104: 8605–8612
Putnam NH et al (2008) The amphioxus genome and the evolution of the chordate karyotype.
Nature 453: 1064–1071
F. Raible and P.R.H. Steinmetz
Matus DQ et al (2007) FGF signaling in gastrulation and neural development in Nematostella
vectensis, an anthozoan cnidarian. Dev Genes Evol 217: 137–148
Mazza ME et al (2007) Genomic organization, gene structure, and developmental expression of
three clustered otx genes in the sea anemone Nematostella vectensis. J Exp Zoolog B Mol Dev
Evol 308: 494–506
McGinnis W et al (1984) A homologous protein-coding sequence in Drosophila homeotic genes
and its conservation in other metazoans. Cell 37: 403–408
McGinnis W and Krumlauf R. (1992) Homeobox genes and axial patterning. Cell 68: 283–302
Miller DJ, Ball EE (2005) Animal evolution: the enigmatic phylum placozoa revisited. Curr Biol
15: R26–R28
Miller DJ, and Ball EE (2008) Cryptic complexity captured: the Nematostella genome reveals its
secrets. Trends Genet 24: 1–4
Miller DJ et al (2005) Cnidarians and ancestral genetic complexity in the animal kingdom. Trends
Genet 21: 536–539
Monteiro AS et al (2006) A low diversity of ANTP class homeobox genes in Placozoa. Evol Dev
8: 174–182
Moroz LL et al (2006) Neuronal transcriptome of aplysia: neuronal compartments and circuitry.
Cell 127: 1453–1467
Mukherjee K, Bürglin TR (2007) Comprehensive analysis of animal TALE homeobox genes: new
conserved motifs and cases of accelerated evolution. J Mol Evol 65: 137–153
Nedelcu AM, Tan C (2007) Early diversification and complex evolutionary history of the p53 tumor
suppressor gene family. Dev Genes Evol 217: 801–806
Nielsen C (2001) Animal Evolution. Interrelationships of the Living Phyla. Oxford University
press, Oxford
Nielsen C (2004) Trochophora Larvae: Cell-Lineages, Ciliary Bands, and Body Regions. 1.
Annelida and Mollusca. J Exp Zool (Mol Dev Evol) 302B: 35–68
Nilsson DE et al (2005) Advanced optics in a jellyfish eye. Nature 435: 201–205
Pang K et al (2004) The ancestral role of COE genes may have been in chemoreception: evidence
from the development of the sea anemone, Nematostella vectensis (Phylum Cnidaria; Class
Anthozoa). Dev Genes Evol 214: 134–138
Pavlopoulos A, Averof M (2005) Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis. Proc Natl Acad Sci USA 102:
7888–7893
Pedersen RA (1971) DNA content, ribosomal gene multiplicity, and cell size in fish. J. Exp. Zool.
177: 65–78
Pennacchio LA et al (2006) In vivo enhancer analysis of human conserved non-coding sequences.
Nature 444: 499–502
Peterson KJ, Sperling EA (2007) Poriferan ANTP genes: primitively simple or secondarily
reduced? Evol Dev 9: 405–408
Philippe H et al (2009) Phylogenomics revives traditional views on deep animal relationships. Curr
Biol 19: 706–712
Piatigorsky J, Kozmik Z (2004) Cubozoan jellyfish: an Evo/Devo model for eyes and other sensory
systems. Int J Dev Biol 48: 719–729
Pincus D et al (2008) Evolution of the phospho-tyrosine signaling machinery in premetazoan
lineages. PNAS 105: 9680–9684
Prpic NM, Telford MJ (2008) Expression of homothorax and extradenticle mRNA in the legs of
the crustacean Parhyale hawaiensis: evidence for a reversal of gene expression regulation in
the pancrustacean lineage. Dev Genes Evol 218: 333–339
Prud’homme B et al (2007) Emerging principles of regulatory evolution. Proc Natl Acad Sci USA
104: 8605–8612
Putnam NH et al (2008) The amphioxus genome and the evolution of the chordate karyotype.
Nature 453: 1064–1071