174
F. Raible and P.R.H. Steinmetz
Haen KM et al (2007) Glass sponges and bilaterian animals share derived mitochondrial genomic
features: a common ancestry or parallel evolution? Mol Biol Evol 24: 1518–1527
Hahn MW, Wray GA (2002) The g-value paradox. Evol Dev 4: 73–75
Halanych KM (2004) The new view of animal phylogeny. Ann Rev Ecol Evol Sys 35: 229–256
Halanych KM et al (1995) Evidence from 18S ribosomal DNA that the lophophorates are
protostome animals. Science 267: 1641–1643
Halder G et al (1995) Induction of ectopic eyes by targeted expression of the eyeless gene in
Drosophila. Science 267: 1788–1792
Hattori D et al (2008) Dscam-mediated cell recognition regulates neural circuit formation. Annu
Rev Cell Dev Biol 24: 597–620
Hayward DC et al (2002) Localized expression of a dpp/BMP2/4 ortholog in a coral embryo. Proc
Natl Acad Sci USA 99: 8106–8111
Heimberg AM et al (2008) MicroRNAs and the advent of vertebrate morphological complexity.
Proc Natl Acad Sci USA 105: 2946–2950
Hibino T et al (2006) The immune gene repertoire encoded in the purple sea urchin genome. Dev
Biol 300: 349–365
Hirose Y et al (2004) Single cell lineage and regionalization of cell populations during Medaka
neurulation. Development 131: 2553–2563
Holland LZ (2000) Body-plan evolution in the Bilateria: early antero-posterior patterning and the
deuterostome-protostome dichotomy. Curr Opin Genet Dev 10: 434–442
Holland LZ et al (2008) The amphioxus genome illuminates vertebrate origins and cephalochordate
biology. Genome Res 18: 1100–1111
Hotta K et al (2008) Brachyury-downstream gene sets in a chordate, Ciona intestinalis: integrating
notochord specification, morphogenesis and chordate evolution. Evol Dev 10: 37–51
Howard-Ashby M et al (2006) High regulatory gene use in sea urchin embryogenesis: Implications
for bilaterian development and evolution. Dev Biol 300: 27–34
Imai KS et al (2006) Regulatory blueprint for a chordate embryo. Science 312: 1183–1187
Imai KS et al (2002) Early embryonic expression of FGF4/6/9 gene and its role in the induction of
mesenchyme and notochord in Ciona savignyi embryos. Development 129: 1729–1738
Jager M et al (2005) Expansion of the SOX gene family predated the emergence of the Bilateria.
Mol Phylogenet Evol 39: 468–477
Jaillon O et al (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the
early vertebrate proto-karyotype. Nature 431: 946–957
Jakob W et al (2004) The Trox-2 Hox/ParaHox gene of Trichoplax (Placozoa) marks an epithelial
boundary. Dev Genes Evol 214: 170–175
Jekely G, Arendt D (2007) Cellular resolution expression profiling using confocal detection of
NBT/BCIP precipitate by reflection microscopy. Biotechniques 42: 751–755
Kamm K et al (2006) Axial patterning and diversification in the cnidaria predate the Hox system.
Curr Biol 16: 920–926
Kandel ER (2001) The molecular biology of memory storage: a dialogue between genes and
synapses. Science 294: 1030–1038
Keller R et al (2000) Mechanisms of convergence and extension by cell intercalation. Philos Trans
R Soc Lond B Biol Sci 355: 897–922
Keller RE (1975) Vital dye mapping of the gastrula and neurula of Xenopus laevis. I. Prospective
areas and morphogenetic movements of the superficial layer. Dev Biol 42: 222–241
King N et al (2003) Evolution of key cell signaling and adhesion protein families predates animal
origins. Science 301: 361–363
King N et al (2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of
metazoans. Nature 451: 783–788
Kortschak RD et al (2003) EST analysis of the cnidarian Acropora millepora reveals extensive
gene loss and rapid sequence divergence in the model invertebrates. Curr Biol 13: 2190–2195
Kozmik Z (2005) Pax genes in eye development and evolution. Curr Opin Genet Dev 15:
430–438
F. Raible and P.R.H. Steinmetz
Haen KM et al (2007) Glass sponges and bilaterian animals share derived mitochondrial genomic
features: a common ancestry or parallel evolution? Mol Biol Evol 24: 1518–1527
Hahn MW, Wray GA (2002) The g-value paradox. Evol Dev 4: 73–75
Halanych KM (2004) The new view of animal phylogeny. Ann Rev Ecol Evol Sys 35: 229–256
Halanych KM et al (1995) Evidence from 18S ribosomal DNA that the lophophorates are
protostome animals. Science 267: 1641–1643
Halder G et al (1995) Induction of ectopic eyes by targeted expression of the eyeless gene in
Drosophila. Science 267: 1788–1792
Hattori D et al (2008) Dscam-mediated cell recognition regulates neural circuit formation. Annu
Rev Cell Dev Biol 24: 597–620
Hayward DC et al (2002) Localized expression of a dpp/BMP2/4 ortholog in a coral embryo. Proc
Natl Acad Sci USA 99: 8106–8111
Heimberg AM et al (2008) MicroRNAs and the advent of vertebrate morphological complexity.
Proc Natl Acad Sci USA 105: 2946–2950
Hibino T et al (2006) The immune gene repertoire encoded in the purple sea urchin genome. Dev
Biol 300: 349–365
Hirose Y et al (2004) Single cell lineage and regionalization of cell populations during Medaka
neurulation. Development 131: 2553–2563
Holland LZ (2000) Body-plan evolution in the Bilateria: early antero-posterior patterning and the
deuterostome-protostome dichotomy. Curr Opin Genet Dev 10: 434–442
Holland LZ et al (2008) The amphioxus genome illuminates vertebrate origins and cephalochordate
biology. Genome Res 18: 1100–1111
Hotta K et al (2008) Brachyury-downstream gene sets in a chordate, Ciona intestinalis: integrating
notochord specification, morphogenesis and chordate evolution. Evol Dev 10: 37–51
Howard-Ashby M et al (2006) High regulatory gene use in sea urchin embryogenesis: Implications
for bilaterian development and evolution. Dev Biol 300: 27–34
Imai KS et al (2006) Regulatory blueprint for a chordate embryo. Science 312: 1183–1187
Imai KS et al (2002) Early embryonic expression of FGF4/6/9 gene and its role in the induction of
mesenchyme and notochord in Ciona savignyi embryos. Development 129: 1729–1738
Jager M et al (2005) Expansion of the SOX gene family predated the emergence of the Bilateria.
Mol Phylogenet Evol 39: 468–477
Jaillon O et al (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the
early vertebrate proto-karyotype. Nature 431: 946–957
Jakob W et al (2004) The Trox-2 Hox/ParaHox gene of Trichoplax (Placozoa) marks an epithelial
boundary. Dev Genes Evol 214: 170–175
Jekely G, Arendt D (2007) Cellular resolution expression profiling using confocal detection of
NBT/BCIP precipitate by reflection microscopy. Biotechniques 42: 751–755
Kamm K et al (2006) Axial patterning and diversification in the cnidaria predate the Hox system.
Curr Biol 16: 920–926
Kandel ER (2001) The molecular biology of memory storage: a dialogue between genes and
synapses. Science 294: 1030–1038
Keller R et al (2000) Mechanisms of convergence and extension by cell intercalation. Philos Trans
R Soc Lond B Biol Sci 355: 897–922
Keller RE (1975) Vital dye mapping of the gastrula and neurula of Xenopus laevis. I. Prospective
areas and morphogenetic movements of the superficial layer. Dev Biol 42: 222–241
King N et al (2003) Evolution of key cell signaling and adhesion protein families predates animal
origins. Science 301: 361–363
King N et al (2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of
metazoans. Nature 451: 783–788
Kortschak RD et al (2003) EST analysis of the cnidarian Acropora millepora reveals extensive
gene loss and rapid sequence divergence in the model invertebrates. Curr Biol 13: 2190–2195
Kozmik Z (2005) Pax genes in eye development and evolution. Curr Opin Genet Dev 15:
430–438