Part A | 3
34 Part A Marine Flora and Fauna
significance, Microbiol. Mol. Biol. Rev. 63, 106–127
(1999)
3.7
Z.S. Kolber, C.L. Van Dover, R.A. Niederman,
P.G. Falkowski: Bacterial photosynthesis in surface
waters of the open ocean, Nature 407, 177–179 (2000)
3.8
O. Béjà, L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd,
C. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, E.F. DeLong: Bacterial rhodopsin: evidence for a new type of phototrophy in the sea, Science 289, 1902–1906 (2000)
3.9
O. Béjà, E.N. Spudich, J.L. Spudich, M. Leclerc,
E.F. DeLong: Proteorhodopsin phototrophy in the
ocean, Nature 411, 786–789 (2001)
3.10 T. Shiba, U. Simidu, N. Taga: Distribution of aerobic
bacteria which contain bacteriochlorophyll a, Appl.
Environ. Microbiol. 38, 43–45 (1979)
3.11 V.V. Yurkov, J.T. Beatty: Aerobic anoxygenic phototrophic bacteria, Microbiol. Mol. Biol. Rev. 62,
695–724 (1998)
3.12 J. Overmann, F. Garcia-Pichel: The phototrophic way
of life. In: The Prokaryotes 2, ed. by M. Dworkin
(Springer, New York 2006) pp. 32–85
3.13 R. Lami, M.T. Cottrell, J. Ras, O. Ulloa, I. Obernosterer, H. Claustre, D.L. Kirchman, P. Lebaron: High
abundances of aerobic anoxygenic photosynthetic
bacteria in the South Pacific Ocean, Appl. Environ.
Microbiol. 13, 4198–4205 (2007)
3.14 Z.S. Kolber, F.G. Plumley, A.S. Lang, J.T. Beatty,
R.E. Blankenship, C.L. VanDover, C. Vetriani,
M. Koblizek, C. Rathgeber, P.G. Falkowski: Contribution of aerobic photoheterotrophic bacteria
to the carbon cycle in the ocean, Science 292,
2492–2495 (2001)
3.15 E. Bamberg, J. Tittor, D. Oesterhelt: Light-driven proton or chloride pumping by halorhodopsin, Proc.
Natl. Acad. Sci. USA 90, 639–643 (1993)
3.16 T. Friedrich, S. Geibel, R. Kalmbach, I. Chizhov,
K. Ataka, J. Heberle, M. Engelhard, E. Bamberg: Proteorhodopsin is a light-driven proton pump with
variable vectoriality, J. Mol. Biol. 321, 821–838 (2002)
3.17 J.R. de la Torre, L. Christianson, O. Béjà, M.T. Suzuki,
D. Karl, J.F. Heidelberg, E.F. DeLong: Proteorhodopsin
genes are widely distributed among divergent bacterial taxa, Proc. Natl. Acad. Sci. USA 100, 12830–12835
(2003)
3.18 E.F. DeLong, O. Béjà: The light-driven proton pump
proteorhodopsin enhances bacterial survival during
tough times, PLoS Biol. 8, e1000359 (2010)
3.19 M.A. Moran, W.L. Miller: Resourceful heterotrophs
make the most of light in the coastal ocean, Nat.
Rev. Microbiol. 5, 792–800 (2007)
3.20 S. Yoshizawa, A. Kawanabe, H. Ito, H. Kandori,
K. Kogure: Diversity and functional analysis of proteorhodopsin in marine Flavobacteria, Environ. Microbiol. 14, 1240–1248 (2012)
3.21 L. Gomez-Consarnau, N. Akram, K. Lindell, A. Pedersen, R. Neutze, D.L. Milton, J.M. Gonzalez, J. Pinhass:
Proteorhodopsin phototrophy promotes survival of
marine bacteria during starvation, PLoS Biol. 8,
e1000358 (2010)
3.22 H. Miyashita, H. Ikemoto, N. Kurano, K. Adachi,
M. Chihara, S. Miyachi: Chlorophyll d as major pigment, Nature 383, 402 (1996)
3.23 H. Miyashita, K. Adachi, N. Kurano, H. Ikemoto,
M. Chihara, S. Miyachi: Pigment composition of a
novel oxygenic photosynthetic prokaryote containing chlorophyll d as the major chlorophyll, Plant Cell
Physiol. 38, 274–281 (1997)
3.24 Q. Hu, H. Miyashita, I. Iwasaki, N. Kurano, S. Miyachi,
M. Iwaki, S. Itoh: A photosystem I reaction center
driven by chlorophyll d in oxygenic photosynthesis,
Proc. Natl. Acad. Sci. USA 95, 13319–13323 (1998)
3.25 T. Tomo, T. Okubo, S. Akimoto, M. Yokono,
H. Miyashita, T. Tsuchiya, T. Noguchi, M. Mimuro:
Identification of the special pair of photosystem
II in a chlorophyll d-dominated cyanobacterium,
Proc. Natl. Acad. Sci. USA 104, 7283–7288 (2007)
3.26 Y. Kashiyama, H. Miyashita, S. Ohkubo, N.O. Ogawa,
Y. Chikaraishi, Y. Takano, H. Suga, T. Toyofuku, H. Nomaki, H. Kitazato, T. Nagata, N. Ohkouchi: Evidence
of Global Chlorophyll d, Science 321, 658 (2008)
3.27 S. Miyachi, K. Strassdat, H. Miyashita, H. Senger:
Quantum requirement of photosynthesis in the primarily chlorophyll dcontaining prokaryote Acaryochloris marina, Z. Naturforsch. 52c, 636–638 (1997)
3.28 M. Chen, M. Schliep, R.D. Willows, Z.L. Cai,
B.A. Neilan, H. Scheer: A red-shifted chlorophyll,
Science 329, 1318 (2010)
3.29 H. Liu, I. Probert, J. Uitz, H. Claustre, S. ArisBrosou, M. Frada, F. Not, C. de Vargas: Haptophyta rule the waves: Extreme oceanic biodiversity
in non-calcifying prymnesiophytes explains the 19Hex paradox, Proc. Natl. Acad. Sci. USA 106, 12803–
12808 (2009)
3.30 M.L. Cuvelier, A.E. Allen, A. Monier, J.P. McCrow,
M. Messie, S.G. Tringe, T. Woyke, R.M. Welsh,
T. Ishoey, J.H. Lee, B.J. Binder, C.L. DuPont, M. Latasa,
C. Guigand, K.R. Buck, J. Hilton, M. Thiagarajan,
E. Caler, B. Read, R.S. Lasken, F.P. Chavez, A.Z. Worden: Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton, Proc. Natl. Acad. Sci. USA 107, 14679–14684 (2010)
3.31 F. Not, K. Valentin, K. Romari, C. Lovejoy, R. Massana, K. Toebe, D. Vaulot, L. Medlin: Picobiliphytes:
A marine picoplanktonic algal group with unknown
affinities to other eukaryotes, Science 315, 253–255
(2007)
3.32 E. Kim, J.W. Harrison, S. Sudek, M.D. Jones,
H.M. Wilcox, T.A. Richards, A.Z. Worden,
J.M. Archibald: Newly identified and diverse
plastid-bearing branch on the eukaryotic tree of
life, Proc. Natl. Acad. Sci. USA 108, 1496–1500 (2011)
3.33 H.J. Tripp, S.R. Bench, K.A. Turk, R.A. Foster, B.A. Desany, F. Niazi, J.P. Affourtit, J.P. Zehr: Metabolic
streamlining in an open-ocean nitrogen-fixing
cyanobacterium, Nature 464, 90–94 (2010)
34 Part A Marine Flora and Fauna
significance, Microbiol. Mol. Biol. Rev. 63, 106–127
(1999)
3.7
Z.S. Kolber, C.L. Van Dover, R.A. Niederman,
P.G. Falkowski: Bacterial photosynthesis in surface
waters of the open ocean, Nature 407, 177–179 (2000)
3.8
O. Béjà, L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd,
C. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, E.F. DeLong: Bacterial rhodopsin: evidence for a new type of phototrophy in the sea, Science 289, 1902–1906 (2000)
3.9
O. Béjà, E.N. Spudich, J.L. Spudich, M. Leclerc,
E.F. DeLong: Proteorhodopsin phototrophy in the
ocean, Nature 411, 786–789 (2001)
3.10 T. Shiba, U. Simidu, N. Taga: Distribution of aerobic
bacteria which contain bacteriochlorophyll a, Appl.
Environ. Microbiol. 38, 43–45 (1979)
3.11 V.V. Yurkov, J.T. Beatty: Aerobic anoxygenic phototrophic bacteria, Microbiol. Mol. Biol. Rev. 62,
695–724 (1998)
3.12 J. Overmann, F. Garcia-Pichel: The phototrophic way
of life. In: The Prokaryotes 2, ed. by M. Dworkin
(Springer, New York 2006) pp. 32–85
3.13 R. Lami, M.T. Cottrell, J. Ras, O. Ulloa, I. Obernosterer, H. Claustre, D.L. Kirchman, P. Lebaron: High
abundances of aerobic anoxygenic photosynthetic
bacteria in the South Pacific Ocean, Appl. Environ.
Microbiol. 13, 4198–4205 (2007)
3.14 Z.S. Kolber, F.G. Plumley, A.S. Lang, J.T. Beatty,
R.E. Blankenship, C.L. VanDover, C. Vetriani,
M. Koblizek, C. Rathgeber, P.G. Falkowski: Contribution of aerobic photoheterotrophic bacteria
to the carbon cycle in the ocean, Science 292,
2492–2495 (2001)
3.15 E. Bamberg, J. Tittor, D. Oesterhelt: Light-driven proton or chloride pumping by halorhodopsin, Proc.
Natl. Acad. Sci. USA 90, 639–643 (1993)
3.16 T. Friedrich, S. Geibel, R. Kalmbach, I. Chizhov,
K. Ataka, J. Heberle, M. Engelhard, E. Bamberg: Proteorhodopsin is a light-driven proton pump with
variable vectoriality, J. Mol. Biol. 321, 821–838 (2002)
3.17 J.R. de la Torre, L. Christianson, O. Béjà, M.T. Suzuki,
D. Karl, J.F. Heidelberg, E.F. DeLong: Proteorhodopsin
genes are widely distributed among divergent bacterial taxa, Proc. Natl. Acad. Sci. USA 100, 12830–12835
(2003)
3.18 E.F. DeLong, O. Béjà: The light-driven proton pump
proteorhodopsin enhances bacterial survival during
tough times, PLoS Biol. 8, e1000359 (2010)
3.19 M.A. Moran, W.L. Miller: Resourceful heterotrophs
make the most of light in the coastal ocean, Nat.
Rev. Microbiol. 5, 792–800 (2007)
3.20 S. Yoshizawa, A. Kawanabe, H. Ito, H. Kandori,
K. Kogure: Diversity and functional analysis of proteorhodopsin in marine Flavobacteria, Environ. Microbiol. 14, 1240–1248 (2012)
3.21 L. Gomez-Consarnau, N. Akram, K. Lindell, A. Pedersen, R. Neutze, D.L. Milton, J.M. Gonzalez, J. Pinhass:
Proteorhodopsin phototrophy promotes survival of
marine bacteria during starvation, PLoS Biol. 8,
e1000358 (2010)
3.22 H. Miyashita, H. Ikemoto, N. Kurano, K. Adachi,
M. Chihara, S. Miyachi: Chlorophyll d as major pigment, Nature 383, 402 (1996)
3.23 H. Miyashita, K. Adachi, N. Kurano, H. Ikemoto,
M. Chihara, S. Miyachi: Pigment composition of a
novel oxygenic photosynthetic prokaryote containing chlorophyll d as the major chlorophyll, Plant Cell
Physiol. 38, 274–281 (1997)
3.24 Q. Hu, H. Miyashita, I. Iwasaki, N. Kurano, S. Miyachi,
M. Iwaki, S. Itoh: A photosystem I reaction center
driven by chlorophyll d in oxygenic photosynthesis,
Proc. Natl. Acad. Sci. USA 95, 13319–13323 (1998)
3.25 T. Tomo, T. Okubo, S. Akimoto, M. Yokono,
H. Miyashita, T. Tsuchiya, T. Noguchi, M. Mimuro:
Identification of the special pair of photosystem
II in a chlorophyll d-dominated cyanobacterium,
Proc. Natl. Acad. Sci. USA 104, 7283–7288 (2007)
3.26 Y. Kashiyama, H. Miyashita, S. Ohkubo, N.O. Ogawa,
Y. Chikaraishi, Y. Takano, H. Suga, T. Toyofuku, H. Nomaki, H. Kitazato, T. Nagata, N. Ohkouchi: Evidence
of Global Chlorophyll d, Science 321, 658 (2008)
3.27 S. Miyachi, K. Strassdat, H. Miyashita, H. Senger:
Quantum requirement of photosynthesis in the primarily chlorophyll dcontaining prokaryote Acaryochloris marina, Z. Naturforsch. 52c, 636–638 (1997)
3.28 M. Chen, M. Schliep, R.D. Willows, Z.L. Cai,
B.A. Neilan, H. Scheer: A red-shifted chlorophyll,
Science 329, 1318 (2010)
3.29 H. Liu, I. Probert, J. Uitz, H. Claustre, S. ArisBrosou, M. Frada, F. Not, C. de Vargas: Haptophyta rule the waves: Extreme oceanic biodiversity
in non-calcifying prymnesiophytes explains the 19Hex paradox, Proc. Natl. Acad. Sci. USA 106, 12803–
12808 (2009)
3.30 M.L. Cuvelier, A.E. Allen, A. Monier, J.P. McCrow,
M. Messie, S.G. Tringe, T. Woyke, R.M. Welsh,
T. Ishoey, J.H. Lee, B.J. Binder, C.L. DuPont, M. Latasa,
C. Guigand, K.R. Buck, J. Hilton, M. Thiagarajan,
E. Caler, B. Read, R.S. Lasken, F.P. Chavez, A.Z. Worden: Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton, Proc. Natl. Acad. Sci. USA 107, 14679–14684 (2010)
3.31 F. Not, K. Valentin, K. Romari, C. Lovejoy, R. Massana, K. Toebe, D. Vaulot, L. Medlin: Picobiliphytes:
A marine picoplanktonic algal group with unknown
affinities to other eukaryotes, Science 315, 253–255
(2007)
3.32 E. Kim, J.W. Harrison, S. Sudek, M.D. Jones,
H.M. Wilcox, T.A. Richards, A.Z. Worden,
J.M. Archibald: Newly identified and diverse
plastid-bearing branch on the eukaryotic tree of
life, Proc. Natl. Acad. Sci. USA 108, 1496–1500 (2011)
3.33 H.J. Tripp, S.R. Bench, K.A. Turk, R.A. Foster, B.A. Desany, F. Niazi, J.P. Affourtit, J.P. Zehr: Metabolic
streamlining in an open-ocean nitrogen-fixing
cyanobacterium, Nature 464, 90–94 (2010)