Detection of Invasive Species References 453
Part B | 16
cle titration using digital imaging and a novel DNA
stain, Anal. Biochem. 237, 204–207 (1996)
16.80 C.T. Wittwer, G.H. Reed, C.N. Gundry, J.G. Vandersteen, R.J. Pryor: High-resolution genotyping
by amplicon melting analysis using LCGreen, Clin.
Chem. 49, 853–860 (2003)
16.81 P.T. Monis, S. Giglio, C.P. Saint: Comparison of
SYTO9 and SYBR Green I for real-time polymerase
chain reaction and investigation of the effect of
dye concentration on amplification and DNA melting curve analysis, Anal. Biochem. 340, 24–34
(2005)
16.82 W. Wang, K. Chen, C. Xu: DNA quantification using EvaGreen and a real-time PCR instrument, Anal.
Biochem. 356, 303–305 (2006)
16.83 C.A. Heid, J. Stevens, K.J. Livak, P.M. Williams: Real
time quantitative PCR, Genome Res. 6, 986–994
(1996)
16.84 A.S. Piatek, S. Tyagi, A.C. Pol, A. Telenti, L.P. Miller,
F.R. Kramer, D. Alland: Molecular beacon sequence
analysis for detecting drug resistance in Mycobacterium tuberculosis, Nat. Biotechnol. 16, 359–363
(1998)
16.85 X. Chen, P.Y. Kwok: Homogeneous genotyping assays for single nucleotide polymorphisms with
fluorescence resonance energy transfer detection,
Genet. Anal. 14, 157–163 (1999)
16.86 I.A. Afonina, M.W. Reed, E. Lusby, I.G. Shishkina, Y.S. Belousov: Minor groove binder conjugated DNA probes for quantitative DNA detection
by hybridization-triggered fluorescence, Biotechniques 32, 940–949 (2002)
16.87 M.J. Espy, J.R. Uhl, L.M. Sloan, S.P. Buckwater,
M.F. Jones, E.A. Vetter, J.D. Yao, N.L. Wengenack,
J.E. Rosenblatt, F.R. Cockerill, T.F. Smith: Real-time
PCR in clinical microbiology: applications for routine laboratory testing, Clin. Micro. Rev. 19, 165–256
(2006)
16.88 N.J. Bott, B.E. Campbell, I. Beveridge, N.B. Chilton,
D. Rees, P.W. Hunt, R.B. Gasser: A combined
microscopic-molecular method for the diagnosis of
strongylid infections in sheep, Int. J. Para. 39, 1277–
1287 (2009)
16.89 A. Pangasa, A.R. Jex, B.E. Campbell, N.J. Bott,
M. Whipp, G. Hogg, M.A. Stevens, R.B. Gasser: High
resolution melting-curve (HRM) analysis for the diagnosis of cryptosporidiosis in humans, Mol. Cell
Probes 23, 10–15 (2009)
16.90 A.A. Chariton, L.N. Court, D.M. Hartley, M.J. Colloff,
C.M. Hardy: Ecological assessment of estuarine
sediments by pyrosequencing eukaryotic ribosomal
DNA, Front Ecol. 8, 233–238 (2010)
16.91 T. Stoeck, D. Bass, M. Nebel, R. Christen,
M.D.M. Jones, H. Breiner, T.A. Richards: Multiple marker parallel tag environmental DNA
sequencing reveals a highly complex eukaryotic
community in marine anoxic water, Mol. Ecol.
19(Supp. 1), 21–31 (2010)
16.92 M.J. Roossinck, P. Saha, G.B. Wiley, J. Quan,
J.D. White, H. Lai, F. Chavarria, G. Shen, B.A. Roe:
Ecogenomics: using massively parallel pyrosequencing to understand virus ecology, Mol. Ecol.
19(Supp. 1), 81–88 (2010)
16.93 L.S. Epp, S. Boessenkool, E.P. Bellemain, J. Haile,
A. Esposito, T. Riaz, C. Erséus, V.I. Gusarov, M.E. Edwards, A. Johnsen, H.K. Stenøien, K. Hassel,
H. Kauserud, N.G. Yoccoz, K.A. Bråthen, E. Willerslev, P. Taberlet, E. Coissac, C. Brochmann: New environmental metabarcodes for analysing soil DNA:
potential for studying past and present ecosystems,
Mol. Ecol. 21, 1821–1833 (2012)
16.94 D.J. Baird, M. Hajibabaei: Biomonitoring 2.0: a new
paradigm in ecosystem assessment made possible
by next-generation DNA sequencing, Mol. Ecol. 21,
2039–2044 (2012)
16.95 S.C. Barry, K.R. Hayes, C.L. Hewitt, H.L. Behrens,
E. Dragsund, S.M. Bakke: Ballast water risk assessment: principles, processes, and methods, ICES
J. Mar. Sci. 65, 121–131 (2008)
16.96 M.J. Vander Zanden, G.J.A. Hansen, S.N. Higgins,
M.S. Kornis: Invasive species early detection and
eradication: A response to Horns (2011), J. Great
Lakes Res. 37, 595–596 (2011)
16.97 D. Minchin: Aquaculture and transport in a changing environment: overlap and links in the spread
of alien biota, Mar. Poll. Bull. 55, 302–313 (2007)
16.98 A.R. Mahon, M.A. Barnes, S. Senapati, J.L. Feder,
J.A. Darling, H. Chang, D.M. Lodge: Molecular detection of invasive species in heterogeneous mixtures using a microfluidic carbon nanotube platform, PLoS ONE 6, e17280 (2011)
16.99 F. Li, A.R. Mahon, M.A. Barnes, J.L. Feder,
D.M. Lodge, C.T. Hwang, R. Shafer, S.T. Ruggiero,
C.E. Tanne: Quantitative and rapid DNA detection by
laser transmission spectroscopy, PLoS ONE 6, e29224
(2011)
Part B | 16
cle titration using digital imaging and a novel DNA
stain, Anal. Biochem. 237, 204–207 (1996)
16.80 C.T. Wittwer, G.H. Reed, C.N. Gundry, J.G. Vandersteen, R.J. Pryor: High-resolution genotyping
by amplicon melting analysis using LCGreen, Clin.
Chem. 49, 853–860 (2003)
16.81 P.T. Monis, S. Giglio, C.P. Saint: Comparison of
SYTO9 and SYBR Green I for real-time polymerase
chain reaction and investigation of the effect of
dye concentration on amplification and DNA melting curve analysis, Anal. Biochem. 340, 24–34
(2005)
16.82 W. Wang, K. Chen, C. Xu: DNA quantification using EvaGreen and a real-time PCR instrument, Anal.
Biochem. 356, 303–305 (2006)
16.83 C.A. Heid, J. Stevens, K.J. Livak, P.M. Williams: Real
time quantitative PCR, Genome Res. 6, 986–994
(1996)
16.84 A.S. Piatek, S. Tyagi, A.C. Pol, A. Telenti, L.P. Miller,
F.R. Kramer, D. Alland: Molecular beacon sequence
analysis for detecting drug resistance in Mycobacterium tuberculosis, Nat. Biotechnol. 16, 359–363
(1998)
16.85 X. Chen, P.Y. Kwok: Homogeneous genotyping assays for single nucleotide polymorphisms with
fluorescence resonance energy transfer detection,
Genet. Anal. 14, 157–163 (1999)
16.86 I.A. Afonina, M.W. Reed, E. Lusby, I.G. Shishkina, Y.S. Belousov: Minor groove binder conjugated DNA probes for quantitative DNA detection
by hybridization-triggered fluorescence, Biotechniques 32, 940–949 (2002)
16.87 M.J. Espy, J.R. Uhl, L.M. Sloan, S.P. Buckwater,
M.F. Jones, E.A. Vetter, J.D. Yao, N.L. Wengenack,
J.E. Rosenblatt, F.R. Cockerill, T.F. Smith: Real-time
PCR in clinical microbiology: applications for routine laboratory testing, Clin. Micro. Rev. 19, 165–256
(2006)
16.88 N.J. Bott, B.E. Campbell, I. Beveridge, N.B. Chilton,
D. Rees, P.W. Hunt, R.B. Gasser: A combined
microscopic-molecular method for the diagnosis of
strongylid infections in sheep, Int. J. Para. 39, 1277–
1287 (2009)
16.89 A. Pangasa, A.R. Jex, B.E. Campbell, N.J. Bott,
M. Whipp, G. Hogg, M.A. Stevens, R.B. Gasser: High
resolution melting-curve (HRM) analysis for the diagnosis of cryptosporidiosis in humans, Mol. Cell
Probes 23, 10–15 (2009)
16.90 A.A. Chariton, L.N. Court, D.M. Hartley, M.J. Colloff,
C.M. Hardy: Ecological assessment of estuarine
sediments by pyrosequencing eukaryotic ribosomal
DNA, Front Ecol. 8, 233–238 (2010)
16.91 T. Stoeck, D. Bass, M. Nebel, R. Christen,
M.D.M. Jones, H. Breiner, T.A. Richards: Multiple marker parallel tag environmental DNA
sequencing reveals a highly complex eukaryotic
community in marine anoxic water, Mol. Ecol.
19(Supp. 1), 21–31 (2010)
16.92 M.J. Roossinck, P. Saha, G.B. Wiley, J. Quan,
J.D. White, H. Lai, F. Chavarria, G. Shen, B.A. Roe:
Ecogenomics: using massively parallel pyrosequencing to understand virus ecology, Mol. Ecol.
19(Supp. 1), 81–88 (2010)
16.93 L.S. Epp, S. Boessenkool, E.P. Bellemain, J. Haile,
A. Esposito, T. Riaz, C. Erséus, V.I. Gusarov, M.E. Edwards, A. Johnsen, H.K. Stenøien, K. Hassel,
H. Kauserud, N.G. Yoccoz, K.A. Bråthen, E. Willerslev, P. Taberlet, E. Coissac, C. Brochmann: New environmental metabarcodes for analysing soil DNA:
potential for studying past and present ecosystems,
Mol. Ecol. 21, 1821–1833 (2012)
16.94 D.J. Baird, M. Hajibabaei: Biomonitoring 2.0: a new
paradigm in ecosystem assessment made possible
by next-generation DNA sequencing, Mol. Ecol. 21,
2039–2044 (2012)
16.95 S.C. Barry, K.R. Hayes, C.L. Hewitt, H.L. Behrens,
E. Dragsund, S.M. Bakke: Ballast water risk assessment: principles, processes, and methods, ICES
J. Mar. Sci. 65, 121–131 (2008)
16.96 M.J. Vander Zanden, G.J.A. Hansen, S.N. Higgins,
M.S. Kornis: Invasive species early detection and
eradication: A response to Horns (2011), J. Great
Lakes Res. 37, 595–596 (2011)
16.97 D. Minchin: Aquaculture and transport in a changing environment: overlap and links in the spread
of alien biota, Mar. Poll. Bull. 55, 302–313 (2007)
16.98 A.R. Mahon, M.A. Barnes, S. Senapati, J.L. Feder,
J.A. Darling, H. Chang, D.M. Lodge: Molecular detection of invasive species in heterogeneous mixtures using a microfluidic carbon nanotube platform, PLoS ONE 6, e17280 (2011)
16.99 F. Li, A.R. Mahon, M.A. Barnes, J.L. Feder,
D.M. Lodge, C.T. Hwang, R. Shafer, S.T. Ruggiero,
C.E. Tanne: Quantitative and rapid DNA detection by
laser transmission spectroscopy, PLoS ONE 6, e29224
(2011)