Part B | 16
452 Part B Tools and Methods in Marine Biotechnology
16.52 K.Y. Zhou, Z.Q. Gao: Identification of the mitten crab Eriocheir sinensis populations using RAPD
markers, Chi. J. App. Env. Bio. 5, 176–180 (1999)
16.53 B.E. Deagle, N. Bax, C.L. Hewitt, J.G. Patil: Development and evaluation of a PCR-based test for
detection of Asterias (Echinodermata: Asteroidea)
larvae in Australian plankton samples from ballast
water, Mar. Fresh Res. 54, 709–719 (2003)
16.54 D. Mountfort, L. Rhodes, J. Broom, M. Gladstone,
J. Tyrell: Fluorescent in situ hybridisation assay as
a species-specifc identifier of the northern Pacific
seastar, Asterias amurensis, NZ J. Mar. Fresh Res. 41,
283–290 (2007)
16.55 J.E. Willis, S. Stewart-Clark, S.J. Greenwood,
J. Davidson, P. Quijon: A PCR-based assay to facilitate early detection of Diplosoma listerianum in
Atlantic Canada, Aquat. Inv. Lett. 6, 7–16 (2011)
16.56 S.E. Stewart-Clark, A. Siah, S.J. Greenwood,
J. Davidson, F.C.J. Berthe: Development of 18S
rDNA and COI gene primers for the identification of
invasive tunicate species in water samples, Aquat.
Inv. 4, 575–580 (2009)
16.57 J.E. Hess, B.J. Swalla, P. Moran: New molecular
markers to genetically differentiate populations of
Didemnum vexillum (Kott, 2002) – an invasive ascidian species, Aquat. Inv. 4, 299–310 (2009)
16.58 K.B. Mullis, F. Faloona, S. Scharf, R. Saiki, G. Horn,
H. Erlich: Specific enzymatic amplification of DNA
in vitro: the polymerase chain reaction, Cold Spring
Harbor Symp. Quant. Biol. 51, 263–273 (1986)
16.59 R.K. Saiki, D.H. Gelfand, S. Stoffel, S.J. Scharf,
R. Higuchi, G.T. Horn, K.B. Mullis, H.A. Erlich:
Primer-directed enzymatic amplification of DNA
with a thermostable DNA polymerase, Science 239,
487–491 (1988)
16.60 D.M. Hillis, M.T. Dixon: Ribosomal DNA: molecular
evolution and phylogenetic inference, Q. Rev. Biol.
66, 411–453 (1991)
16.61 T.H. Eickbush, D.G. Eickbush: Finely orchestrated
movements: evolution of the ribosomal RNA genes,
Genetics 175, 477–485 (2007)
16.62 J.F. Elder, B.J. Turner: Concerted evolution of repetitive DNA sequences in eukaryotes, Q. Rev. Biol. 70,
297–320 (1995)
16.63 H. Xu, S.Z. DeLuca, P.H. O’Farrell: Manipulation of
the metazoan mitochondrial genome with targeted restriction enzymes, Science 321, 575–577
(2008)
16.64 T.D. Kocher, W.K. Thomas, A. Meyer, S.V. Edwards,
S. P¯ a¯ abo, F.X. Villablanca, A.C. Wilson: Dynamics of
mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers,
PNAS 86, 6196–6200 (1989)
16.65 D.M. Rand: Thermal habit, metabolic rate and the
evolution of mitochondrial DNA, Tree 9, 125–131
(1994)
16.66 R.G. Harrison: Animal mitochondrial DNA as a genetic marker in population and evolutionary biology, Tree 4, 6–11 (1989)
16.67 V.P. Buonoccorsi, E. Starkey, J.E. Graves: Mitochondrial and nuclear DNA analysis of population subdivision among young-of-the-year Spanish mackerel (Scomberomorus maculates) from the western
Atlantic and Gulf of Mexico, Mar. Biol. 138, 37–45
(2001)
16.68 T. Kawakami, R.K. Butlin, M. Adams, K.M. Saint,
D.J. Paull, S.J.B. Cooper: Differential gene flow
of mitochondrial and nuclear DNA markers
among chromosomal races of Australian morabine
grasshoppers (Vandiemenella, viatica species
group), Mol. Ecol. 16, 5044–5056 (2007)
16.69 J.D. Palmer: Contrasting modes and tempos of
genome evolution in land plant organelles, Trends
Genet. 6, 115–120 (1990)
16.70 D.F. Soria-Hernanz, J.M. Braverman, M.B. Hamilton: Parallel rate heterogeneity in chloroplast and
mitochondrial genomes of brazil nut trees (Lecythidaceae) is consistent with lineage effects, Mol. Biol.
Evol. 25, 1282–1296 (2008)
16.71 T. Hanyuda, S. Arai, K. Ueda: Variability in the rbcL
introns of Caulerpale an algae (Chlorphyta, Ulvophyceae), J. Plant Res. 113, 403–413 (2000)
16.72 M. Pan, A.J.A. McBeath, S.J. Hay, G.J. Pierce,
C.O. Cunnigham: Real-time PCR assay for detection
and relative quantification of Liocarcinus depurator larvae from plankton samples, Mar. Biol. 153,
859–870 (2008)
16.73 X. Pochon, N.J. Bott, K.F. Smith, S.A. Wood: Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of
International Marine Pests, PLOS ONE 8(9), e73935
(2013)
16.74 A. Zhan, M. Hulak, F. Sylvester, X. Huang, A.A. Adebayo, C.L. Abbott, S.J. Adamowicz, D.D. Heath,
M.E. Cristescu, H.J. MacIsaac: High sensitivity of 454
pyrosequencing for the detection of rare species in
aquatic communities, Meth. Eco. Evol. 4(6), 558–
565 (2013)
16.75 J. Mbwana, I. Bölin, E. Lyamuya, F. Mhalu,
T. Lagergård: Molecular characterization of Haemophilus ducreyi isolates from different geographical
locations, J. Clin Micro. 44, 132–137 (2006)
16.76 I. Yamasaki, G. Yoshizaki, M. Yokota, C.A. StrÃ: ssmann, S. Watanabe: Mitochondrial DNA variation
and population structure of the Japanese mitten
crab Eriocheir japonica, Fish Sci. 72, 299–309 (2006)
16.77 R.B. Gasser, M. Hu, N.B. Chilton, B.E. Campbell,
A.J. Jex, D. Otranto, C. Cafarchia, I. Beveridge,
X. Zhu: Single-stranded conformation polymorphism (SSCP) for the analysis of genetic variation,
Nat. Protoc. 1, 3121–3128 (2006)
16.78 R. Higuchi, C. Fockler, G. Dollinger, R. Watson: Kinetic PCR analysis: real-time monitoring of DNA
amplification reactions, Biotechnology (NY) 11,
1026–1030 (1993)
16.79 A. Becker, A. Reith, J. Napiwotzki, B. Kadenbach: A quantitative method of determining initial
amounts of DNA by polymerase chain reaction cy-
452 Part B Tools and Methods in Marine Biotechnology
16.52 K.Y. Zhou, Z.Q. Gao: Identification of the mitten crab Eriocheir sinensis populations using RAPD
markers, Chi. J. App. Env. Bio. 5, 176–180 (1999)
16.53 B.E. Deagle, N. Bax, C.L. Hewitt, J.G. Patil: Development and evaluation of a PCR-based test for
detection of Asterias (Echinodermata: Asteroidea)
larvae in Australian plankton samples from ballast
water, Mar. Fresh Res. 54, 709–719 (2003)
16.54 D. Mountfort, L. Rhodes, J. Broom, M. Gladstone,
J. Tyrell: Fluorescent in situ hybridisation assay as
a species-specifc identifier of the northern Pacific
seastar, Asterias amurensis, NZ J. Mar. Fresh Res. 41,
283–290 (2007)
16.55 J.E. Willis, S. Stewart-Clark, S.J. Greenwood,
J. Davidson, P. Quijon: A PCR-based assay to facilitate early detection of Diplosoma listerianum in
Atlantic Canada, Aquat. Inv. Lett. 6, 7–16 (2011)
16.56 S.E. Stewart-Clark, A. Siah, S.J. Greenwood,
J. Davidson, F.C.J. Berthe: Development of 18S
rDNA and COI gene primers for the identification of
invasive tunicate species in water samples, Aquat.
Inv. 4, 575–580 (2009)
16.57 J.E. Hess, B.J. Swalla, P. Moran: New molecular
markers to genetically differentiate populations of
Didemnum vexillum (Kott, 2002) – an invasive ascidian species, Aquat. Inv. 4, 299–310 (2009)
16.58 K.B. Mullis, F. Faloona, S. Scharf, R. Saiki, G. Horn,
H. Erlich: Specific enzymatic amplification of DNA
in vitro: the polymerase chain reaction, Cold Spring
Harbor Symp. Quant. Biol. 51, 263–273 (1986)
16.59 R.K. Saiki, D.H. Gelfand, S. Stoffel, S.J. Scharf,
R. Higuchi, G.T. Horn, K.B. Mullis, H.A. Erlich:
Primer-directed enzymatic amplification of DNA
with a thermostable DNA polymerase, Science 239,
487–491 (1988)
16.60 D.M. Hillis, M.T. Dixon: Ribosomal DNA: molecular
evolution and phylogenetic inference, Q. Rev. Biol.
66, 411–453 (1991)
16.61 T.H. Eickbush, D.G. Eickbush: Finely orchestrated
movements: evolution of the ribosomal RNA genes,
Genetics 175, 477–485 (2007)
16.62 J.F. Elder, B.J. Turner: Concerted evolution of repetitive DNA sequences in eukaryotes, Q. Rev. Biol. 70,
297–320 (1995)
16.63 H. Xu, S.Z. DeLuca, P.H. O’Farrell: Manipulation of
the metazoan mitochondrial genome with targeted restriction enzymes, Science 321, 575–577
(2008)
16.64 T.D. Kocher, W.K. Thomas, A. Meyer, S.V. Edwards,
S. P¯ a¯ abo, F.X. Villablanca, A.C. Wilson: Dynamics of
mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers,
PNAS 86, 6196–6200 (1989)
16.65 D.M. Rand: Thermal habit, metabolic rate and the
evolution of mitochondrial DNA, Tree 9, 125–131
(1994)
16.66 R.G. Harrison: Animal mitochondrial DNA as a genetic marker in population and evolutionary biology, Tree 4, 6–11 (1989)
16.67 V.P. Buonoccorsi, E. Starkey, J.E. Graves: Mitochondrial and nuclear DNA analysis of population subdivision among young-of-the-year Spanish mackerel (Scomberomorus maculates) from the western
Atlantic and Gulf of Mexico, Mar. Biol. 138, 37–45
(2001)
16.68 T. Kawakami, R.K. Butlin, M. Adams, K.M. Saint,
D.J. Paull, S.J.B. Cooper: Differential gene flow
of mitochondrial and nuclear DNA markers
among chromosomal races of Australian morabine
grasshoppers (Vandiemenella, viatica species
group), Mol. Ecol. 16, 5044–5056 (2007)
16.69 J.D. Palmer: Contrasting modes and tempos of
genome evolution in land plant organelles, Trends
Genet. 6, 115–120 (1990)
16.70 D.F. Soria-Hernanz, J.M. Braverman, M.B. Hamilton: Parallel rate heterogeneity in chloroplast and
mitochondrial genomes of brazil nut trees (Lecythidaceae) is consistent with lineage effects, Mol. Biol.
Evol. 25, 1282–1296 (2008)
16.71 T. Hanyuda, S. Arai, K. Ueda: Variability in the rbcL
introns of Caulerpale an algae (Chlorphyta, Ulvophyceae), J. Plant Res. 113, 403–413 (2000)
16.72 M. Pan, A.J.A. McBeath, S.J. Hay, G.J. Pierce,
C.O. Cunnigham: Real-time PCR assay for detection
and relative quantification of Liocarcinus depurator larvae from plankton samples, Mar. Biol. 153,
859–870 (2008)
16.73 X. Pochon, N.J. Bott, K.F. Smith, S.A. Wood: Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of
International Marine Pests, PLOS ONE 8(9), e73935
(2013)
16.74 A. Zhan, M. Hulak, F. Sylvester, X. Huang, A.A. Adebayo, C.L. Abbott, S.J. Adamowicz, D.D. Heath,
M.E. Cristescu, H.J. MacIsaac: High sensitivity of 454
pyrosequencing for the detection of rare species in
aquatic communities, Meth. Eco. Evol. 4(6), 558–
565 (2013)
16.75 J. Mbwana, I. Bölin, E. Lyamuya, F. Mhalu,
T. Lagergård: Molecular characterization of Haemophilus ducreyi isolates from different geographical
locations, J. Clin Micro. 44, 132–137 (2006)
16.76 I. Yamasaki, G. Yoshizaki, M. Yokota, C.A. StrÃ: ssmann, S. Watanabe: Mitochondrial DNA variation
and population structure of the Japanese mitten
crab Eriocheir japonica, Fish Sci. 72, 299–309 (2006)
16.77 R.B. Gasser, M. Hu, N.B. Chilton, B.E. Campbell,
A.J. Jex, D. Otranto, C. Cafarchia, I. Beveridge,
X. Zhu: Single-stranded conformation polymorphism (SSCP) for the analysis of genetic variation,
Nat. Protoc. 1, 3121–3128 (2006)
16.78 R. Higuchi, C. Fockler, G. Dollinger, R. Watson: Kinetic PCR analysis: real-time monitoring of DNA
amplification reactions, Biotechnology (NY) 11,
1026–1030 (1993)
16.79 A. Becker, A. Reith, J. Napiwotzki, B. Kadenbach: A quantitative method of determining initial
amounts of DNA by polymerase chain reaction cy-