Marine Sponges – Molecular Biology and Biotechnology References 249
Part A | 8
8.128 S. López-Legentil, P.M. Erwin, J.R. Pawlik, B. Song: Effects of sponge bleaching on
ammonia-oxidizing Archaea: distribution and
relative expression of ammonia monooxygenase genes associated with the barrel sponge
Xestospongia muta, Microb. Ecol. 60(3), 561–571
(2010)
8.129 A.S. Turque, D. Batista, C.B. Silveira, A.M. Cardoso,
R.P. Vieira, F.C. Moraes, M.M. Clementino, R.M. Albano, R. Paranhos, O.B. Martins, G. Muricy: Environmental shaping of sponge associated archaeal
communities, PLoS ONE 5(12), e15774 (2010)
8.130 F. Liu, M. Han, F. Zhang, B. Zhang, Z. Li: Distribution and abundance of Archaea in South China Sea
sponge Holoxea sp. and the presence of ammoniaoxidizing Archaea in sponge cells, Evid. Based Complement Altern. Med. 2011, 723696 (2011)
8.131 R. Radax, F. Hoffmann, T.R. Rapp, S. Leninger,
C. Schleper: Ammonia-oxidising Archaea as main
drivers of nitrification in cold-water sponges, Environ. Microbiol. 14(4), 909–923 (2012)
8.132 D. Steger, P. Ettinger-Epstein, S. Whalan,
U. Hentschel, R. de Nys, M. Wagner, M.W. Taylor:
Diversity and mode of transmission of ammoniaoxidising Archaea in marine sponges, Environ.
Microbiol. 10(4), 1087–1094 (2008)
8.133 J.E. Duffy: Host use patterns and demography in
a guild of tropical sponge-dwelling shrimps, Mar.
Ecol. Prog. Ser. 90, 127–138 (1992)
8.134 L.F.L. Duarte, C. Nalesso: The sponge Zygomycale
parishii (Bowerbank) and its endobiotic fauna, Estuar. Coast. Shelf Science 42, 139–151 (1996)
8.135 T.P. Henkel, J.R. Pawlik: Habitat use by spongedwelling brittlestars, Mar. Biol. 146, 301–313
(2004)
8.136 A.J. Forrester: The association between the sponge
Halichondria panicea (Pallas) and scallop Chlamys
varia (L.): a commensal-protective mutualism,
J. Exp. Mar. Biol. Ecol. 36, 1–10 (1979)
8.137 M.Y. Liu, S. Kjelleberg, T. Thomas: Functional genomic analysis of an uncultured
ı-proteobacterium in the sponge Cymbastela
concentrica, ISME J. 5(3), 427–435 (2011)
8.138 S.J. Hallam, K.T. Konstantinidis, N. Putnam,
C. Schleper, Y. Watanabe, J. Sugahara, C. Preston,
J. de la Torre, P.M. Richardson, E.F. DeLong: Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum, Proc. Nat. Acad.
Sci. 103(48), 18296–18301 (2006)
8.139 A. Siegl, J. Kamke, T. Hochmuth, J. Piel, M. Richter,
C. Liang, T. Dandekar, U. Hentschel: Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges, ISME J. 5(1), 61–70 (2010)
8.140 R. Radax, T. Rattei, A. Lanzen, C. Bayer, H.T. Rapp,
T. Urich, C. Schleper: Metatranscriptomics of the
marine sponge Geodia barretti: tackling phylogeny
and function of its microbial community, Environ.
Microbiol. 14(5), 1308–1324 (2012)
8.141 T. Thomas, D. Rusch, M.Z. DeMaere, P.Y. Yung,
M. Lewis, A. Halpern, K.B. Heidelberg, S. Egan,
P.D. Steinberg, S. Kjelleberg: Functional genomic
signatures of sponge bacteria reveal unique and
shared features of symbiosis, ISME J. 12, 1557–1567
(2010)
8.142 A. Schirmer, R. Gadkari, C.D. Reeves, F. Ibrahim,
E.F. DeLong, C.R. Hutchinson: Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine
sponge Discodermia dissoluta, Appl. Environ. Microbiol. 8, 4840–4849 (2005)
8.143 T.K. Kim, J.A. Fuerst: Diversity of polyketide
synthase genes from bacteria associated with
the marine sponge Pseudoceratina clavata:
culture-dependent and culture-independent
approaches, Environ. Microbiol. 8(8), 1460–1470
(2006)
8.144 L. Fieseler, U. Hentschel, L. Grozdanov, A. Schirmer,
G. Gaiping Wen, M. Platzer, S. Hrvatin, D. Butzke,
K. Zimmermann, J. Piel: Widespread occurrence
and genomic context of unusually small polyketide
synthase genes in microbial consortia associated
with marine sponges, Appl. Environ. Microbiol.
73(7), 2144–2155 (2007)
8.145 K. Bayer, S. Schmitt, U. Hentschel: Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina
aerophoba, Environ. Microbiol. 10(11), 2942–2955
(2008)
8.146 N.M. Mohamed, K. Saito, Y. Tal, R.T. Hill: Diversity and expression of nitrogen fixation genes in
bacterial symbionts of marine sponges, Environ.
Microbiol. 10(11), 2910–2921 (2008)
8.147 N.M. Mohamed, K. Saito, Y. Tal, R.T. Hill: Diversity of aerobic and anaerobic ammonia-oxidizing
bacteria in marine sponges, ISME J. 4(1), 38–48
(2010)
8.148 Z. Yang, Z. Li: Spatial distribution of prokaryotic
symbionts and ammoxidation, denitrifier bacteria
in marine sponge Astrosclera willeyana, Sci. Reports 2, 528 (2012)
8.149 J.W. Blunt, B.R. Copp, M.H. Munro, P.T. Northcote,
M.R. Prinsep: Marine natural products, Nat. Prod.
Rep. 27(2), 165–237 (2010)
8.150 N.L. Thakur, A.N. Thakur, W.W. Muller: Marine natural products in drug discovery, Nat. Prod. Radiance
4(6), 471–477 (2005)
8.151 M.C. Leal, J. Puga, J. Serôdio, N.C. Gomes, R. Calado: Trends in the discovery of new marine natural products from invertebrates over the last two
decades – where and what are we bioprospecting?,
PLoS ONE 7(1), e30580 (2012)
8.152 T.S. Bugni, M.P. Singh, L. Chen, D.A. Arias,
M.K. Harper, M. Greenstein, W.M. Maiese, G.P. Concepcion, G.C. Mangalindan, C.M. Ireland: Kalihinols from two Acanthella cavernosa sponges: Inhibitors of bacterial folate biosynthesis, Tetrahedron 35(48), 6981–6988 (2004)
Part A | 8
8.128 S. López-Legentil, P.M. Erwin, J.R. Pawlik, B. Song: Effects of sponge bleaching on
ammonia-oxidizing Archaea: distribution and
relative expression of ammonia monooxygenase genes associated with the barrel sponge
Xestospongia muta, Microb. Ecol. 60(3), 561–571
(2010)
8.129 A.S. Turque, D. Batista, C.B. Silveira, A.M. Cardoso,
R.P. Vieira, F.C. Moraes, M.M. Clementino, R.M. Albano, R. Paranhos, O.B. Martins, G. Muricy: Environmental shaping of sponge associated archaeal
communities, PLoS ONE 5(12), e15774 (2010)
8.130 F. Liu, M. Han, F. Zhang, B. Zhang, Z. Li: Distribution and abundance of Archaea in South China Sea
sponge Holoxea sp. and the presence of ammoniaoxidizing Archaea in sponge cells, Evid. Based Complement Altern. Med. 2011, 723696 (2011)
8.131 R. Radax, F. Hoffmann, T.R. Rapp, S. Leninger,
C. Schleper: Ammonia-oxidising Archaea as main
drivers of nitrification in cold-water sponges, Environ. Microbiol. 14(4), 909–923 (2012)
8.132 D. Steger, P. Ettinger-Epstein, S. Whalan,
U. Hentschel, R. de Nys, M. Wagner, M.W. Taylor:
Diversity and mode of transmission of ammoniaoxidising Archaea in marine sponges, Environ.
Microbiol. 10(4), 1087–1094 (2008)
8.133 J.E. Duffy: Host use patterns and demography in
a guild of tropical sponge-dwelling shrimps, Mar.
Ecol. Prog. Ser. 90, 127–138 (1992)
8.134 L.F.L. Duarte, C. Nalesso: The sponge Zygomycale
parishii (Bowerbank) and its endobiotic fauna, Estuar. Coast. Shelf Science 42, 139–151 (1996)
8.135 T.P. Henkel, J.R. Pawlik: Habitat use by spongedwelling brittlestars, Mar. Biol. 146, 301–313
(2004)
8.136 A.J. Forrester: The association between the sponge
Halichondria panicea (Pallas) and scallop Chlamys
varia (L.): a commensal-protective mutualism,
J. Exp. Mar. Biol. Ecol. 36, 1–10 (1979)
8.137 M.Y. Liu, S. Kjelleberg, T. Thomas: Functional genomic analysis of an uncultured
ı-proteobacterium in the sponge Cymbastela
concentrica, ISME J. 5(3), 427–435 (2011)
8.138 S.J. Hallam, K.T. Konstantinidis, N. Putnam,
C. Schleper, Y. Watanabe, J. Sugahara, C. Preston,
J. de la Torre, P.M. Richardson, E.F. DeLong: Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum, Proc. Nat. Acad.
Sci. 103(48), 18296–18301 (2006)
8.139 A. Siegl, J. Kamke, T. Hochmuth, J. Piel, M. Richter,
C. Liang, T. Dandekar, U. Hentschel: Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges, ISME J. 5(1), 61–70 (2010)
8.140 R. Radax, T. Rattei, A. Lanzen, C. Bayer, H.T. Rapp,
T. Urich, C. Schleper: Metatranscriptomics of the
marine sponge Geodia barretti: tackling phylogeny
and function of its microbial community, Environ.
Microbiol. 14(5), 1308–1324 (2012)
8.141 T. Thomas, D. Rusch, M.Z. DeMaere, P.Y. Yung,
M. Lewis, A. Halpern, K.B. Heidelberg, S. Egan,
P.D. Steinberg, S. Kjelleberg: Functional genomic
signatures of sponge bacteria reveal unique and
shared features of symbiosis, ISME J. 12, 1557–1567
(2010)
8.142 A. Schirmer, R. Gadkari, C.D. Reeves, F. Ibrahim,
E.F. DeLong, C.R. Hutchinson: Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine
sponge Discodermia dissoluta, Appl. Environ. Microbiol. 8, 4840–4849 (2005)
8.143 T.K. Kim, J.A. Fuerst: Diversity of polyketide
synthase genes from bacteria associated with
the marine sponge Pseudoceratina clavata:
culture-dependent and culture-independent
approaches, Environ. Microbiol. 8(8), 1460–1470
(2006)
8.144 L. Fieseler, U. Hentschel, L. Grozdanov, A. Schirmer,
G. Gaiping Wen, M. Platzer, S. Hrvatin, D. Butzke,
K. Zimmermann, J. Piel: Widespread occurrence
and genomic context of unusually small polyketide
synthase genes in microbial consortia associated
with marine sponges, Appl. Environ. Microbiol.
73(7), 2144–2155 (2007)
8.145 K. Bayer, S. Schmitt, U. Hentschel: Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina
aerophoba, Environ. Microbiol. 10(11), 2942–2955
(2008)
8.146 N.M. Mohamed, K. Saito, Y. Tal, R.T. Hill: Diversity and expression of nitrogen fixation genes in
bacterial symbionts of marine sponges, Environ.
Microbiol. 10(11), 2910–2921 (2008)
8.147 N.M. Mohamed, K. Saito, Y. Tal, R.T. Hill: Diversity of aerobic and anaerobic ammonia-oxidizing
bacteria in marine sponges, ISME J. 4(1), 38–48
(2010)
8.148 Z. Yang, Z. Li: Spatial distribution of prokaryotic
symbionts and ammoxidation, denitrifier bacteria
in marine sponge Astrosclera willeyana, Sci. Reports 2, 528 (2012)
8.149 J.W. Blunt, B.R. Copp, M.H. Munro, P.T. Northcote,
M.R. Prinsep: Marine natural products, Nat. Prod.
Rep. 27(2), 165–237 (2010)
8.150 N.L. Thakur, A.N. Thakur, W.W. Muller: Marine natural products in drug discovery, Nat. Prod. Radiance
4(6), 471–477 (2005)
8.151 M.C. Leal, J. Puga, J. Serôdio, N.C. Gomes, R. Calado: Trends in the discovery of new marine natural products from invertebrates over the last two
decades – where and what are we bioprospecting?,
PLoS ONE 7(1), e30580 (2012)
8.152 T.S. Bugni, M.P. Singh, L. Chen, D.A. Arias,
M.K. Harper, M. Greenstein, W.M. Maiese, G.P. Concepcion, G.C. Mangalindan, C.M. Ireland: Kalihinols from two Acanthella cavernosa sponges: Inhibitors of bacterial folate biosynthesis, Tetrahedron 35(48), 6981–6988 (2004)