Part A | 8
248 Part A Marine Flora and Fauna
8.105 M. Han, F. Liu, F. Zhang, Z. Li, H. Lin: Bacterial and Archaeal symbionts in the South China
Sea sponge Phakiella fusca: community structure,
relative abundance and ammonia-oxidising populations, Mar. Biotechnol. 14(6), 701–713 (2012)
8.106 C.Q. Li, W.C. Liu, P. Zhu, J.L. Yang, K.D. Cheng: Phylogenetic diversity of bacteria associated with the
marine sponge Gelliodes carnosa collected from
the Hainan Island coastal waters of the South China
Sea, Microb. Ecol. 62(4), 800–812 (2011)
8.107 M.L. Sogin, H.G. Morrison, J.A. Huber, D. Mark
Welch, S.M. Huse, P.R. Neal, J.M. Arrieta,
G.J. Herndl: Microbial diversity in the deep
sea and the underexplored “rare biosphere”, Proc.
Natl. Acad. Sci. USA 103(32), 12115–12120 (2006)
8.108 B.J. Campbell, D.L. Kirchman: Bacterial diversity,
community structure and potential growth rates
along an estuarine salinity gradient, ISME J. 7(1),
210–220 (2012)
8.109 X. Lin, S. Green, M.M. Tfaily, O. Prakash, K.T. Konstantinidis, J.E. Corbett, J.P. Chanton, W.T. Cooper,
J.E. Kostka: Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the glacial
lake Agassiz peatland, Appl. Environ. Microbiol.
78(19), 7023–7031 (2012)
8.110 J.L. Ray, B. Töpper, S. An, A. Silyakova, J. Spindelböck, R. Thyrhaug, M.S. Dubow, T.F. Thingstad,
R.A. Sandaa: Effect of increased pCO(2) on bacterial
assemblage shifts in response to glucose addition
in Fram Strait seawater mesocosms, FEMS Microbiol.
Ecol. 82(3), 713–723 (2012)
8.111 J.B. Sylvan, B.M. Toner, K.J. Edwards: Life and
death of deep-sea vents: bacterial diversity and
ecosystem succession on inactive hydrothermal
sulphides, mBio 3(1), e00279–11 (2012)
8.112 M.A. van Kessel, B.E. Dutilh, K. Neveling,
M.P. Kwint, J.A. Veltman, G. Flik, M.S. Jetten,
P.H. Klaren, H.J. den Op Camp: Pyrosequencing of
16S rRNA gene amplicons to study the microbiota in
the gastrointestinal tract of carp (Cyprinus carpio
L.), AMB Express 18, 1–41 (2012)
8.113 A.J. Collins, B.A. Labarre, B.S. Won, M.V. Shah,
S. Heng, M.H. Choudhury, S.A. Haydar, J. Santiago,
S.V. Nyholm: Diversity and partitioning of bacterial populations within the accessory nidamental
gland of the squid Euprymnascolopes, Appl. Environ. Microbiol. 78(12), 4200–4208 (2012)
8.114 O.O. Lee, J. Yang, S. Bougouffa, Y. Wang, Z. Batang,
R. Tian, A. Al-Suwailem, P.Y. Qian: Pyrosequencing
reveals spatial and species variations in bacterial
communities associated with corals from the Red
Sea, ISME J. 78(20), 7173–7184 (2012)
8.115 K.M. Morrow, A.G. Moss, N.E. Chadwick, M.R. Liles:
Bacterial associates of two Caribbean coral species
reveal species-specific distribution and geographic
variability, Appl. Environ. Microbiol. 78(18), 6438–
6449 (2012)
8.116 M.J. Neave, C. Streten-Joyce, C.J. Glasby,
K.A. McGuinness, D.L. Parry, K.S. Gibb: The
bacterial community associated with the marine
polychaete Ophelina sp.1 (Annelida: Opheliidae)
is altered by copper and zinc contamination in
sediments, Microb. Ecol. 63(3), 639–650 (2012)
8.117 R.L. Simister, P. Deines, E.S. Botté, N.S. Webster,
M.W. Taylor: Sponge-specific clusters revisited:
a comprehensive phylogeny of sponge-associated
microorganisms, Environ. Microbiol. 14(2), 517 (2012)
8.118 O.O. Lee, Y. Wang, J. Yang, F.F. Lafi, A. Al-Suwailem,
P.Y. Qian: Pyrosequencing reveals highly diverse
and species specific microbial communities in
sponges from the Red Sea, ISME J. 5(4), 650–664
(2011)
8.119 N.S. Webster, M.W. Taylor, F. Benham, S. Lücker,
Rattei, S. Whalan, M. Horn, M. Wagner: Deep sequencing reveals exceptional diversity and modes
of transmission for bacterial sponge symbionts, Environ. Microbiol. 12(8), 2070–2082 (2010)
8.120 S.A. Jackson, J. Kennedy, J.P. Morrissey, F. O’Gara,
A.D.W. Dobson: Pyrosequencing reveals diverse and
distinct sponge-specific microbial communities in
sponges from a single geographical location in Irish
waters, Microb. Ecol. 64(1), 105–116 (2012)
8.121 A.E. Trindade-Silva, C. Rua, G.G. Silva, B.E. Dutilh,
A.P. Moreira, R.A. Edwards, E. Hajdu, G. LoboHajdu, A.T. Vasconcelos, R.G. Berlinck, F.L. Thompson: Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera
brasiliensis, PLoS ONE 7(7), e39905 (2012)
8.122 J.R. White, J. Patel, A. Ottesen, G. Arce, P. Blackwelder, J.V. Lopez: Pyrosequencing of bacterial
symbionts within Axinella corrugata sponges: diversity and seasonal variability, PLoS ONE 7(6),
e38204 (2012)
8.123 C.M. Preston, K.Y. Wu, T.F. Molinski, E.F. Delong:
A˜ psychrophilic crenarchaeon inhabits a marine
sponge: Cenarchaeum symbiosum gen. nov., sp.
nov., Proc. Nat. Acad. Sci, USA 93, 6241–6246 (1996)
8.124 E.Y. Lee, H.K. Lee, Y.K. Lee, C.J. Sim, H.L. Lee: Diversity of symbiotic archaeal communities in marine
sponges from Korea, Biomol. Eng. 20, 299–304
(2003)
8.125 T. Pape, F. Hoffmann, N.V. Quéric, J.R. Juterzenka,
W. Michaelis: Dense populations of Archaea
associated with the demosponge Tentorium
semisuberites Schmidt, 1870, from Arctic deepwaters, Polar Biol. 29, 662–667 (2006)
8.126 B. Holmes, H. Blanch: Genus-specific associations
of marine sponges with group I creanarchaeotes,
Mar. Biotechnol. 150, 759–772 (2007)
8.127 B. Meyer, J. Kuever: Phylogenetic diversity and
spatial distribution of the microbial community associated with the Caribbean deep-water
sponge Polymastia cf., corticata by 16S rRNA, aprA
and amoA analysis, Microb. Ecol. 56, 306–321
(2008)
248 Part A Marine Flora and Fauna
8.105 M. Han, F. Liu, F. Zhang, Z. Li, H. Lin: Bacterial and Archaeal symbionts in the South China
Sea sponge Phakiella fusca: community structure,
relative abundance and ammonia-oxidising populations, Mar. Biotechnol. 14(6), 701–713 (2012)
8.106 C.Q. Li, W.C. Liu, P. Zhu, J.L. Yang, K.D. Cheng: Phylogenetic diversity of bacteria associated with the
marine sponge Gelliodes carnosa collected from
the Hainan Island coastal waters of the South China
Sea, Microb. Ecol. 62(4), 800–812 (2011)
8.107 M.L. Sogin, H.G. Morrison, J.A. Huber, D. Mark
Welch, S.M. Huse, P.R. Neal, J.M. Arrieta,
G.J. Herndl: Microbial diversity in the deep
sea and the underexplored “rare biosphere”, Proc.
Natl. Acad. Sci. USA 103(32), 12115–12120 (2006)
8.108 B.J. Campbell, D.L. Kirchman: Bacterial diversity,
community structure and potential growth rates
along an estuarine salinity gradient, ISME J. 7(1),
210–220 (2012)
8.109 X. Lin, S. Green, M.M. Tfaily, O. Prakash, K.T. Konstantinidis, J.E. Corbett, J.P. Chanton, W.T. Cooper,
J.E. Kostka: Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the glacial
lake Agassiz peatland, Appl. Environ. Microbiol.
78(19), 7023–7031 (2012)
8.110 J.L. Ray, B. Töpper, S. An, A. Silyakova, J. Spindelböck, R. Thyrhaug, M.S. Dubow, T.F. Thingstad,
R.A. Sandaa: Effect of increased pCO(2) on bacterial
assemblage shifts in response to glucose addition
in Fram Strait seawater mesocosms, FEMS Microbiol.
Ecol. 82(3), 713–723 (2012)
8.111 J.B. Sylvan, B.M. Toner, K.J. Edwards: Life and
death of deep-sea vents: bacterial diversity and
ecosystem succession on inactive hydrothermal
sulphides, mBio 3(1), e00279–11 (2012)
8.112 M.A. van Kessel, B.E. Dutilh, K. Neveling,
M.P. Kwint, J.A. Veltman, G. Flik, M.S. Jetten,
P.H. Klaren, H.J. den Op Camp: Pyrosequencing of
16S rRNA gene amplicons to study the microbiota in
the gastrointestinal tract of carp (Cyprinus carpio
L.), AMB Express 18, 1–41 (2012)
8.113 A.J. Collins, B.A. Labarre, B.S. Won, M.V. Shah,
S. Heng, M.H. Choudhury, S.A. Haydar, J. Santiago,
S.V. Nyholm: Diversity and partitioning of bacterial populations within the accessory nidamental
gland of the squid Euprymnascolopes, Appl. Environ. Microbiol. 78(12), 4200–4208 (2012)
8.114 O.O. Lee, J. Yang, S. Bougouffa, Y. Wang, Z. Batang,
R. Tian, A. Al-Suwailem, P.Y. Qian: Pyrosequencing
reveals spatial and species variations in bacterial
communities associated with corals from the Red
Sea, ISME J. 78(20), 7173–7184 (2012)
8.115 K.M. Morrow, A.G. Moss, N.E. Chadwick, M.R. Liles:
Bacterial associates of two Caribbean coral species
reveal species-specific distribution and geographic
variability, Appl. Environ. Microbiol. 78(18), 6438–
6449 (2012)
8.116 M.J. Neave, C. Streten-Joyce, C.J. Glasby,
K.A. McGuinness, D.L. Parry, K.S. Gibb: The
bacterial community associated with the marine
polychaete Ophelina sp.1 (Annelida: Opheliidae)
is altered by copper and zinc contamination in
sediments, Microb. Ecol. 63(3), 639–650 (2012)
8.117 R.L. Simister, P. Deines, E.S. Botté, N.S. Webster,
M.W. Taylor: Sponge-specific clusters revisited:
a comprehensive phylogeny of sponge-associated
microorganisms, Environ. Microbiol. 14(2), 517 (2012)
8.118 O.O. Lee, Y. Wang, J. Yang, F.F. Lafi, A. Al-Suwailem,
P.Y. Qian: Pyrosequencing reveals highly diverse
and species specific microbial communities in
sponges from the Red Sea, ISME J. 5(4), 650–664
(2011)
8.119 N.S. Webster, M.W. Taylor, F. Benham, S. Lücker,
Rattei, S. Whalan, M. Horn, M. Wagner: Deep sequencing reveals exceptional diversity and modes
of transmission for bacterial sponge symbionts, Environ. Microbiol. 12(8), 2070–2082 (2010)
8.120 S.A. Jackson, J. Kennedy, J.P. Morrissey, F. O’Gara,
A.D.W. Dobson: Pyrosequencing reveals diverse and
distinct sponge-specific microbial communities in
sponges from a single geographical location in Irish
waters, Microb. Ecol. 64(1), 105–116 (2012)
8.121 A.E. Trindade-Silva, C. Rua, G.G. Silva, B.E. Dutilh,
A.P. Moreira, R.A. Edwards, E. Hajdu, G. LoboHajdu, A.T. Vasconcelos, R.G. Berlinck, F.L. Thompson: Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera
brasiliensis, PLoS ONE 7(7), e39905 (2012)
8.122 J.R. White, J. Patel, A. Ottesen, G. Arce, P. Blackwelder, J.V. Lopez: Pyrosequencing of bacterial
symbionts within Axinella corrugata sponges: diversity and seasonal variability, PLoS ONE 7(6),
e38204 (2012)
8.123 C.M. Preston, K.Y. Wu, T.F. Molinski, E.F. Delong:
A˜ psychrophilic crenarchaeon inhabits a marine
sponge: Cenarchaeum symbiosum gen. nov., sp.
nov., Proc. Nat. Acad. Sci, USA 93, 6241–6246 (1996)
8.124 E.Y. Lee, H.K. Lee, Y.K. Lee, C.J. Sim, H.L. Lee: Diversity of symbiotic archaeal communities in marine
sponges from Korea, Biomol. Eng. 20, 299–304
(2003)
8.125 T. Pape, F. Hoffmann, N.V. Quéric, J.R. Juterzenka,
W. Michaelis: Dense populations of Archaea
associated with the demosponge Tentorium
semisuberites Schmidt, 1870, from Arctic deepwaters, Polar Biol. 29, 662–667 (2006)
8.126 B. Holmes, H. Blanch: Genus-specific associations
of marine sponges with group I creanarchaeotes,
Mar. Biotechnol. 150, 759–772 (2007)
8.127 B. Meyer, J. Kuever: Phylogenetic diversity and
spatial distribution of the microbial community associated with the Caribbean deep-water
sponge Polymastia cf., corticata by 16S rRNA, aprA
and amoA analysis, Microb. Ecol. 56, 306–321
(2008)