350
Sinorhizobium meliloti (NesR), 304
Sodium hypochlorite (NaClO), 260
Solar UV radiation, 247
SOLiD sequencing, 336
Sphingolipids, 56
Spirulina platensis, 261
Sporulation, 111
Sterols, 59, 60
Stictosiphonia arbuscula (Ceramiales), 25
Stramenopiles-Alveolates-Rhizaria (SAR)
group, 280
Sulphated flavonoids, 200
Superoxide dismutase (SOD), 18, 25, 255
Systems biology
complex network diagrams, 168
defined, 209
dynamic environment, 209
evolutionary theory, 168
genomics, 121, 122
high-level computational capacity, 121
high-throughput techniques, 120
integration and meta-analysis, 215, 216
irreducible and interconnected
functions, 209
metabolomics, 124
molecular system, 209
nutrient-limited pelagic waters,
cyanobacteria, 210
predictions, 216
seagrass paradox, 182, 183
seagrasses (marine angiosperms),
120, 168
specific organization and intrinsic
biological program, 209
“systems-level” thinking, 209
transcriptomics, 123, 124
whole-cell modeling, 217
T
TAG biosynthetic machinery, 270
Taq polymerase, 328
Temperature
eelgrass distributions, 174
environmental forcing, 173
photosynthesis and respiration, 172
seagrasses, 172
Terminal restriction fragment length
polymorphism (T-RFLP), 224
Thalassiosira pseudonana, 228
Tolerance mechanisms
adaptive mechanism, 40
external factors, 38
metal-enriched environments, 38
O 2 excitation, 38
Scytosiphon gracilis, 38
two-stage process, 38
Tolerant marine species, 15
Transcriptomics, 124, 268
EST sequencing, 123
genome-guided transcriptome, 123
high-throughput technologies, 120
(see Marine microalgal
transcriptomics)
mediterranean endemic species, 123
metabolic potential, 229
metatranscriptomics, 227
and proteomics, 224
RNA-seq data, 123
RuBisCO protein, 124
Unix-based environment, 123
Tricarboxylic acid (TCA) cycle, 239
Tropodithietic acid (TDA), 285
Two-dimensional gel electrophoresis-mass
spectrometry (2DE-MS), 336
U
Ulva linza, 6
Ulva mutabilis, 284
Ulvophyceae, 7
Undaria, 6
Upper mixed layer (UML), 236
UV radiation, 242, 243
UV/PAR radiation, 15
V
Vibrio anguillarum (V. anguillarum), 305
Volatiles
algal reproduction, 101
chlorinated compounds, 101
complexity factors, 102–104
environmental factors, 100
experimental factors, 102
growth regulators, 100
marine algae, 100
metabolic origins, 102
micro- and macroalgae, 101
organic compounds, 100, 101
physiological responses, 104, 105
processed algae, 101
seagrasses, 102
seaweeds, 101
W
Western blot, 335, 336
Index
Sinorhizobium meliloti (NesR), 304
Sodium hypochlorite (NaClO), 260
Solar UV radiation, 247
SOLiD sequencing, 336
Sphingolipids, 56
Spirulina platensis, 261
Sporulation, 111
Sterols, 59, 60
Stictosiphonia arbuscula (Ceramiales), 25
Stramenopiles-Alveolates-Rhizaria (SAR)
group, 280
Sulphated flavonoids, 200
Superoxide dismutase (SOD), 18, 25, 255
Systems biology
complex network diagrams, 168
defined, 209
dynamic environment, 209
evolutionary theory, 168
genomics, 121, 122
high-level computational capacity, 121
high-throughput techniques, 120
integration and meta-analysis, 215, 216
irreducible and interconnected
functions, 209
metabolomics, 124
molecular system, 209
nutrient-limited pelagic waters,
cyanobacteria, 210
predictions, 216
seagrass paradox, 182, 183
seagrasses (marine angiosperms),
120, 168
specific organization and intrinsic
biological program, 209
“systems-level” thinking, 209
transcriptomics, 123, 124
whole-cell modeling, 217
T
TAG biosynthetic machinery, 270
Taq polymerase, 328
Temperature
eelgrass distributions, 174
environmental forcing, 173
photosynthesis and respiration, 172
seagrasses, 172
Terminal restriction fragment length
polymorphism (T-RFLP), 224
Thalassiosira pseudonana, 228
Tolerance mechanisms
adaptive mechanism, 40
external factors, 38
metal-enriched environments, 38
O 2 excitation, 38
Scytosiphon gracilis, 38
two-stage process, 38
Tolerant marine species, 15
Transcriptomics, 124, 268
EST sequencing, 123
genome-guided transcriptome, 123
high-throughput technologies, 120
(see Marine microalgal
transcriptomics)
mediterranean endemic species, 123
metabolic potential, 229
metatranscriptomics, 227
and proteomics, 224
RNA-seq data, 123
RuBisCO protein, 124
Unix-based environment, 123
Tricarboxylic acid (TCA) cycle, 239
Tropodithietic acid (TDA), 285
Two-dimensional gel electrophoresis-mass
spectrometry (2DE-MS), 336
U
Ulva linza, 6
Ulva mutabilis, 284
Ulvophyceae, 7
Undaria, 6
Upper mixed layer (UML), 236
UV radiation, 242, 243
UV/PAR radiation, 15
V
Vibrio anguillarum (V. anguillarum), 305
Volatiles
algal reproduction, 101
chlorinated compounds, 101
complexity factors, 102–104
environmental factors, 100
experimental factors, 102
growth regulators, 100
marine algae, 100
metabolic origins, 102
micro- and macroalgae, 101
organic compounds, 100, 101
physiological responses, 104, 105
processed algae, 101
seagrasses, 102
seaweeds, 101
W
Western blot, 335, 336
Index