163
Rogers A, Allen DJ, Davey PA, Morgan PB, Ainsworth EA, Bernacchi CJ et al (2004) Leaf photosynthesis and carbohydrate dynamics of soybeans grown throughout their life-cycle under
Free-Air Carbon dioxide Enrichment. Plant Cell Environ 27:449–458
Rumeau D, Peltier G, Cournac L (2007) Chlororespiration and cyclic electron flow around PSI
during photosynthesis and plant stress response. Plant Cell Environ 30:1041–1051
Sahi SV, Sharma NC (2005) Phytoremediation of lead. In: Shtangeeva I (ed) Trace and ultratrace
elements in plants and soils, Series advances in ecological researches. Witpress, Southampton,
Boston, pp 209–222
Salvucci ME, Crafts-Brandner SJ (2004) Mechanism for deactivation of Rubisco under moderate
heat stress. Physiol Plant 122:513–519
Salvucci ME, Ogren WL (1996) The mechanism of Rubisco activase: insights from studies of the
properties and structure of the enzyme. Photosynth Res 47:1–11
Salvucci ME, Osteryoung KW, Crafts-Brandner SJ, Vierling E (2001) Exceptional sensitivity of
Rubisco activase to thermal denaturation in vitro and in vivo. Plant Physiol 127:1053–1064
Sandoval-Gil JM, Marín-Guirao L, Ruiz JM (2012) The effect of salinity increase on the photosynthesis, growth and survival of the Mediterranean seagrass Cymodocea nodosa. Estuar Coast
Shelf Sci 115:260–271
Sandoval-Gil JM, Ruiz JM, Marín-Guirao L, Bernardeau-Esteller J, Sánchez-Lizaso JL (2014)
Ecophysiological plasticity of shallow and deep populations of the Mediterranean seagrasses
Posidonia oceanica and Cymodocea nodosa in response to hypersaline stress. Mar Environ
Res 95:39–61
Sanz-sàez A, Erice G, Aranjuelo I, Nogués S, Irigoyen JJ, Sánchezdíaz M (2010) Photosynthetic
down-regulation under elevated CO 2 exposure can be prevented by nitrogen supply in nodulated alfalfa. J Plant Physiol 167:1558–1565
Sato S, Yanagisawa S (2014) Characterization of metabolic states of Arabidopsis thaliana under
diverse carbon and nitrogen nutrient conditions via targeted metabolomic analysis. Plant Cell
Physiol 55:306–319
Schliep M, Pernice M, Sinutok S, Bryant CV, York PH, Rasheed MA, Ralph PJ (2015) Evaluation
of reference genes for RT-qPCR studies in the seagrass Zostera muelleri exposed to light limitation. Sci Rep 5:17051
Schmidt AL, Wysmyk JKC, Craig SE, Lotze HK (2012) Regional-scale effects of eutrophication
on ecosystem structure and services of seagrass beds. Limnol Oceanogr 57:1389–1402
Schulze S, Westhoff P, Gowik U (2016) Glycine decarboxylase in C3, C4 and C3–C4 intermediate
species. Curr Opin Plant Biol 31:29–35
Shafer DJ, Kaldy JE, Sherman TD, Marko KM (2011) Effects of salinity on photosynthesis and
respiration of the seagrass Zostera japonica: a comparison of two established populations in
North America. Aquat Bot 95:214–220
Sharon Y, Levitan O, Spungin D, Berman-Frank I, Beer S (2011) Photoacclimation of the seagrass Halophila stipulacea to the dim irradiance at its 48–meter depth limit. Limnol Oceanogr
56:357–362
Shioi Y, Tamai H, Sasa T (1978) Effects of copper on photosynthetic electron transport systems in
spinach chloroplasts. Plant Cell Physiol 19:203–209
Silva J, Barrote I, Costa MM, Albano S, Santos R (2013) Physiological responses of Zostera
marina and Cymodocea nodosa to light-limitation stress. PLoS One 8(11):e81058
Stirbet A, Govindjee (2011) On the relation between the Kautsky effect (chlorophyll a fluorescence
induction) and Photosystem II: Basics and applications of the OJIP fluorescence transient. J
Photochem Photobiol B 104:236–257
Stitt M, Krapp A (1999) The interaction between elevated carbon dioxide and nitrogen nutrition:
the physiological and molecular background. Plant Cell Environ 22:583–621
Sun J, Gibson KM, Kiirats O, Okita TW, Edwards GE (2002) Interactions of nitrate and CO 2
enrichment on growth, carbohydrates, and Rubisco in Arabidopsis starch mutants: significance
of starch and hexose. Plant Physiol 130:1573–1583
Taiz L, Zeiger E, Moller I, Murphy A (2015) Plant physiology and development, 6th edn. Sinauer
Associates Inc, Sunderland, MA
7 Photobiology of Seagrasses: A Systems Biology Perspective
Rogers A, Allen DJ, Davey PA, Morgan PB, Ainsworth EA, Bernacchi CJ et al (2004) Leaf photosynthesis and carbohydrate dynamics of soybeans grown throughout their life-cycle under
Free-Air Carbon dioxide Enrichment. Plant Cell Environ 27:449–458
Rumeau D, Peltier G, Cournac L (2007) Chlororespiration and cyclic electron flow around PSI
during photosynthesis and plant stress response. Plant Cell Environ 30:1041–1051
Sahi SV, Sharma NC (2005) Phytoremediation of lead. In: Shtangeeva I (ed) Trace and ultratrace
elements in plants and soils, Series advances in ecological researches. Witpress, Southampton,
Boston, pp 209–222
Salvucci ME, Crafts-Brandner SJ (2004) Mechanism for deactivation of Rubisco under moderate
heat stress. Physiol Plant 122:513–519
Salvucci ME, Ogren WL (1996) The mechanism of Rubisco activase: insights from studies of the
properties and structure of the enzyme. Photosynth Res 47:1–11
Salvucci ME, Osteryoung KW, Crafts-Brandner SJ, Vierling E (2001) Exceptional sensitivity of
Rubisco activase to thermal denaturation in vitro and in vivo. Plant Physiol 127:1053–1064
Sandoval-Gil JM, Marín-Guirao L, Ruiz JM (2012) The effect of salinity increase on the photosynthesis, growth and survival of the Mediterranean seagrass Cymodocea nodosa. Estuar Coast
Shelf Sci 115:260–271
Sandoval-Gil JM, Ruiz JM, Marín-Guirao L, Bernardeau-Esteller J, Sánchez-Lizaso JL (2014)
Ecophysiological plasticity of shallow and deep populations of the Mediterranean seagrasses
Posidonia oceanica and Cymodocea nodosa in response to hypersaline stress. Mar Environ
Res 95:39–61
Sanz-sàez A, Erice G, Aranjuelo I, Nogués S, Irigoyen JJ, Sánchezdíaz M (2010) Photosynthetic
down-regulation under elevated CO 2 exposure can be prevented by nitrogen supply in nodulated alfalfa. J Plant Physiol 167:1558–1565
Sato S, Yanagisawa S (2014) Characterization of metabolic states of Arabidopsis thaliana under
diverse carbon and nitrogen nutrient conditions via targeted metabolomic analysis. Plant Cell
Physiol 55:306–319
Schliep M, Pernice M, Sinutok S, Bryant CV, York PH, Rasheed MA, Ralph PJ (2015) Evaluation
of reference genes for RT-qPCR studies in the seagrass Zostera muelleri exposed to light limitation. Sci Rep 5:17051
Schmidt AL, Wysmyk JKC, Craig SE, Lotze HK (2012) Regional-scale effects of eutrophication
on ecosystem structure and services of seagrass beds. Limnol Oceanogr 57:1389–1402
Schulze S, Westhoff P, Gowik U (2016) Glycine decarboxylase in C3, C4 and C3–C4 intermediate
species. Curr Opin Plant Biol 31:29–35
Shafer DJ, Kaldy JE, Sherman TD, Marko KM (2011) Effects of salinity on photosynthesis and
respiration of the seagrass Zostera japonica: a comparison of two established populations in
North America. Aquat Bot 95:214–220
Sharon Y, Levitan O, Spungin D, Berman-Frank I, Beer S (2011) Photoacclimation of the seagrass Halophila stipulacea to the dim irradiance at its 48–meter depth limit. Limnol Oceanogr
56:357–362
Shioi Y, Tamai H, Sasa T (1978) Effects of copper on photosynthetic electron transport systems in
spinach chloroplasts. Plant Cell Physiol 19:203–209
Silva J, Barrote I, Costa MM, Albano S, Santos R (2013) Physiological responses of Zostera
marina and Cymodocea nodosa to light-limitation stress. PLoS One 8(11):e81058
Stirbet A, Govindjee (2011) On the relation between the Kautsky effect (chlorophyll a fluorescence
induction) and Photosystem II: Basics and applications of the OJIP fluorescence transient. J
Photochem Photobiol B 104:236–257
Stitt M, Krapp A (1999) The interaction between elevated carbon dioxide and nitrogen nutrition:
the physiological and molecular background. Plant Cell Environ 22:583–621
Sun J, Gibson KM, Kiirats O, Okita TW, Edwards GE (2002) Interactions of nitrate and CO 2
enrichment on growth, carbohydrates, and Rubisco in Arabidopsis starch mutants: significance
of starch and hexose. Plant Physiol 130:1573–1583
Taiz L, Zeiger E, Moller I, Murphy A (2015) Plant physiology and development, 6th edn. Sinauer
Associates Inc, Sunderland, MA
7 Photobiology of Seagrasses: A Systems Biology Perspective