162
Petersen J, Rogowska-Wrzesinska A, Jensen OL (2013) Functional proteomics of barley and barley chloroplasts-strategies, methods and perspectives. Front Plant Sci 4:52
Pietrzykowska M, Suorsa M, Semchonok DA, Tikkanen M, Boekema EJ, Aro E-M, Jansson S
(2014) The light-harvesting chlorophyll a/b binding proteins Lhcb1 and Lhcb2 play complementary roles during state transitions in Arabidopsis. Plant Cell 26:3646–3660
Piro A, Marín-Guirao L, Serra IA, Spadafora A, Sandoval-Gil JM, Bernardeau-Esteller J, Mazzuca
S (2015a) The modulation of leaf metabolism plays a role in salt tolerance of Cymodocea
nodosa exposed to hypersaline stress in mesocosms. Front Plant Sci 6:464
Piro A, Serra IL, Spadafora A, Cardilio M, Bianco L, Perrotta G, Santos R, Mazzuca S (2015b)
Purification of intact chloroplasts from marine plant Posidonia oceanica suitable for organelle
proteomics. Proteomics 15:4159–4174
Poolman MG, Miguet L, Sweetlove LJ, Fell DA (2009) A genome-scale metabolic model of
Arabidopsis and some of its properties. Plant Physiol 151:1570–1581
Portis AR (2003) Rubisco activase: Rubisco’s catalytic chaperone. Photosynth Res 75:11–27
Portis AR, Li CS, Wang DF, Salvucci ME (2008) Regulation of Rubisco activase and its interaction
with Rubisco. J Exp Bot 59:1597–1604
Proctor MCF, Smirnoff N (2011) Ecophysiology of photosynthesis in bryophytes: major roles for
oxygen photoreduction and non-photochemical quenching? Physiol Plant 141:130–140
Ragavan P, Saxena A, Mohan PM, Coomar T, Ragavan A (2013) Leaf reddening in seagrasses of
Andaman and Nicobar Islands. Trop Ecol 54:269–273
Ragni M, Ribera d’Alcala M (2004) Light as an information carrier underwater. J Plankton Res
26:433–443
Ralph PJ, Burchett MD (1995) Photosynthetic responses of the seagrass Halophila ovalis (R Br.)
Hook. f. to high irradiance stress, using chlorophyll a fluorescence. Aquat Bot 51:55–66
Ralph PJ, Durako MJ, Enríquez S, Collier CJ, Doblin MA (2007) Impact of light limitation on
seagrasses. J Exp Mar Biol Ecol 350:176–193
Ralph PJ, Polk SM, Moore KA, Orth RJ, Smith WO (2002) Operation of the xanthophyll cycle
in the seagrass Zostera marina in response to variable irradiance. J Exp Mar Biol Ecol
271:189–207
Ralph PJ, Burchett MD (1998) Photosynthetic response of Halophila ovalis to heavy metal stress.
Environ Pollut 103:91–101
Ramanan VK, Shen L, Moore JH, Saykin AJ (2012) Pathway analysis of genomic data: concepts,
methods, and prospects for future development. Trends Genet 28:323–332
Ranvier S, Gnassia-Barelli M, Pergent G, Capiomont A, Roméo M (2000) The effect of mercury on
glutathione S transferase in the marine phanerogam Posidonia oceanica. Bot Mar 43:161–168
Rao SK, Reiskind JB, Bowes G (2008) Kinetic analyses of recombinant isoforms of phosphorenolpyruvate carboxylase from Hydrilla verticillata leaves and the impact of substituting a
C4-signature serine. Plant Sci 174:475–483
Rasmusson LM (2015) Seagrass respiration an assessment of oxygen consumption patterns of
temperate marine macrophytes. Doctoral thesis, Stockholm University
Rasmusson LM, Björk M (2014) Determining light suppression of mitochondrial respiration for
three temperate marine macrophytes using the Kok method. Bot Mar 57:483–486
Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardeström P, Moritz
T, Samuelsson G (2010) A metabolomic approach to study major metabolite changes during
acclimation to limiting CO 2 in Chlamydomonas reinhardtii. Plant Physiol 154:187–196
Rensing SA, Sheerin DJ, Hiltbrunner A (2016) Phytochromes: more than meets the eye. Trends
Plant Sci 21:543–546
Reusch TH, Veron A, Preuss C, Weiner J, Wissler L, Beck A, Klages S, Kube M, Reinhardt R,
Bornberg-Bauer E (2008) Comparative analysis of expressed sequence tag (EST) librariesin
the seagrass Zostera marina subjected to temperature stress. Mar Biotechnol 10:297–309
Rijstenbil JW, Derksen JWM, Gerringa LJA, Poortvliet TCW, Sandee A, Van Den Berg M, Van
Drie J, Wijnholds JA (1994) Oxidative stress induced by copper: defense and damage in the
marine planktonic diatom Ditylum brightwellii (Grunow) West, grown in continuous cultures
with high and low zinc levels. Mar Biol 119:583–590
P. Buapet
Petersen J, Rogowska-Wrzesinska A, Jensen OL (2013) Functional proteomics of barley and barley chloroplasts-strategies, methods and perspectives. Front Plant Sci 4:52
Pietrzykowska M, Suorsa M, Semchonok DA, Tikkanen M, Boekema EJ, Aro E-M, Jansson S
(2014) The light-harvesting chlorophyll a/b binding proteins Lhcb1 and Lhcb2 play complementary roles during state transitions in Arabidopsis. Plant Cell 26:3646–3660
Piro A, Marín-Guirao L, Serra IA, Spadafora A, Sandoval-Gil JM, Bernardeau-Esteller J, Mazzuca
S (2015a) The modulation of leaf metabolism plays a role in salt tolerance of Cymodocea
nodosa exposed to hypersaline stress in mesocosms. Front Plant Sci 6:464
Piro A, Serra IL, Spadafora A, Cardilio M, Bianco L, Perrotta G, Santos R, Mazzuca S (2015b)
Purification of intact chloroplasts from marine plant Posidonia oceanica suitable for organelle
proteomics. Proteomics 15:4159–4174
Poolman MG, Miguet L, Sweetlove LJ, Fell DA (2009) A genome-scale metabolic model of
Arabidopsis and some of its properties. Plant Physiol 151:1570–1581
Portis AR (2003) Rubisco activase: Rubisco’s catalytic chaperone. Photosynth Res 75:11–27
Portis AR, Li CS, Wang DF, Salvucci ME (2008) Regulation of Rubisco activase and its interaction
with Rubisco. J Exp Bot 59:1597–1604
Proctor MCF, Smirnoff N (2011) Ecophysiology of photosynthesis in bryophytes: major roles for
oxygen photoreduction and non-photochemical quenching? Physiol Plant 141:130–140
Ragavan P, Saxena A, Mohan PM, Coomar T, Ragavan A (2013) Leaf reddening in seagrasses of
Andaman and Nicobar Islands. Trop Ecol 54:269–273
Ragni M, Ribera d’Alcala M (2004) Light as an information carrier underwater. J Plankton Res
26:433–443
Ralph PJ, Burchett MD (1995) Photosynthetic responses of the seagrass Halophila ovalis (R Br.)
Hook. f. to high irradiance stress, using chlorophyll a fluorescence. Aquat Bot 51:55–66
Ralph PJ, Durako MJ, Enríquez S, Collier CJ, Doblin MA (2007) Impact of light limitation on
seagrasses. J Exp Mar Biol Ecol 350:176–193
Ralph PJ, Polk SM, Moore KA, Orth RJ, Smith WO (2002) Operation of the xanthophyll cycle
in the seagrass Zostera marina in response to variable irradiance. J Exp Mar Biol Ecol
271:189–207
Ralph PJ, Burchett MD (1998) Photosynthetic response of Halophila ovalis to heavy metal stress.
Environ Pollut 103:91–101
Ramanan VK, Shen L, Moore JH, Saykin AJ (2012) Pathway analysis of genomic data: concepts,
methods, and prospects for future development. Trends Genet 28:323–332
Ranvier S, Gnassia-Barelli M, Pergent G, Capiomont A, Roméo M (2000) The effect of mercury on
glutathione S transferase in the marine phanerogam Posidonia oceanica. Bot Mar 43:161–168
Rao SK, Reiskind JB, Bowes G (2008) Kinetic analyses of recombinant isoforms of phosphorenolpyruvate carboxylase from Hydrilla verticillata leaves and the impact of substituting a
C4-signature serine. Plant Sci 174:475–483
Rasmusson LM (2015) Seagrass respiration an assessment of oxygen consumption patterns of
temperate marine macrophytes. Doctoral thesis, Stockholm University
Rasmusson LM, Björk M (2014) Determining light suppression of mitochondrial respiration for
three temperate marine macrophytes using the Kok method. Bot Mar 57:483–486
Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardeström P, Moritz
T, Samuelsson G (2010) A metabolomic approach to study major metabolite changes during
acclimation to limiting CO 2 in Chlamydomonas reinhardtii. Plant Physiol 154:187–196
Rensing SA, Sheerin DJ, Hiltbrunner A (2016) Phytochromes: more than meets the eye. Trends
Plant Sci 21:543–546
Reusch TH, Veron A, Preuss C, Weiner J, Wissler L, Beck A, Klages S, Kube M, Reinhardt R,
Bornberg-Bauer E (2008) Comparative analysis of expressed sequence tag (EST) librariesin
the seagrass Zostera marina subjected to temperature stress. Mar Biotechnol 10:297–309
Rijstenbil JW, Derksen JWM, Gerringa LJA, Poortvliet TCW, Sandee A, Van Den Berg M, Van
Drie J, Wijnholds JA (1994) Oxidative stress induced by copper: defense and damage in the
marine planktonic diatom Ditylum brightwellii (Grunow) West, grown in continuous cultures
with high and low zinc levels. Mar Biol 119:583–590
P. Buapet