5
Bacteria and Marine Biogeochemistry
204
growth yield in five psychrophilic sulfate-reducing
bacteria from Arctic sediments. Environmental
Microbiology, 1: 457-467.
Knoblauch, C., Sahm, K. and Jørgensen, B.B., 1999.
Psychrophilic sulphate reducing bacteria isolated
from permanently cold arctic marine sediments:
description of Desulfofrigus oceanense gen. nov., sp.
nov., Desulfofrigus fragile sp. nov., Desulfofaba
gelida gen. nov., sp. nov., Desulfotalea psychrophila
gen. nov., sp. nov., and Desulfotalea arctica sp. nov.
Journal of Systematic Bacteriology, 49: 1631-1643.
Koch, A.L., 1990. Diffusion, the crucial process in
many aspects of the biology of bacteria. In:
Marshall, K.C. (ed), Advances in microbial ecology,
11, Plenum, NY, pp. 37-70.
Koch, A.L., 1996. What size should a bacterium be? A
question of scale. Annual Reviews of Microbiology,
50: 317-348.
Krekeler, D. and Cypionka, H., 1995. The preferred
electron acceptor of Desulfovibrio desulfuricans
CSN. FEMS Microbiology Ecology, 17: 271-278.
Krüger, M., Meyerdierks, A., Glöckner, F.O., Amann, R.,
Widdel, F., Kube, M., Reinhardt, R., Kahnt, J.,
Böcher, R., Thauer, R.K. and Shima, S, 2003. A
conspicuous nickel protein in microbial mats that
oxidize methane anaerobically. Nature, 426: 878-881.
Kühl, M. and Revsbech, N.P., 2001. Biogeochemical
microsensors for boundary layer studies. In: Boudreau,
B.P. and Jørgensen, B.B. (eds.), The benthic boundary
layer: transport processes and biogeochemistry.
Oxford University Press, Oxford, pp. 180-210.
Kvenvolden, K.A., 1993. Gas hydrates - geological
perspective and global change. Reviews in Geophysics, 31: 173-187.
Llobet-Brossa, E., Roselló-Mora, R. and Ammann, R.,
1998. Microbial community composition of Wadden
Sea sediments as revealed by fluorescence in situ
hybridization. Applied and Environmental Microbiology, 64: 2691-2696.
Lochte, K. and Turley, C.M., 1988. Bacteria and
cyanobacteria associated with phytodetritus in the
deep sea. Nature, 333: 67-69.
Madigan, M.T., Martinko, J.M. and Parker, J., 1997.
Biology of microorganisms. Prentice Hall, London,
986 pp.
Nauhaus, K., Boetius, A., Krüger, M. and Widdel, F.,
2002. In vitro demonstration of anaerobic oxidation
of methane coupled to sulphate reduction in
sediment from a marine gas hydrate area.
Environmental Microbiology 4: 296-305.
Nielsen, L.P., 1992. Denitrification in sediment
determined from nitrogen isotope pairing. FEMS
Microbiology Ecology, 86: 357-362.
Niewöhner, C., Hensen, C., Kasten, S., Zabel, M. and
Schulz, H.D., 1998. Deep sulfate reduction
completely mediated by anaerobic methane oxidation
in sediments of the upwelling area off Namibia.
Geochimica et Cosmochimica Acta, 62: 455-464.
Oremland, R.S. and Polcin, S., 1982. Methanogenesis and
sulfate reduction: Competitive and noncompetetive
substrates in estuarine sediments. Applied and
Environmental Microbiology, 44: 1270-1276.
Oremland, R.S., Marsh, L.M. and Polcin, S., 1982. Methane
production and simultaneous sulphate reduction in
anoxic saltmarsh sediments. Nature, 296: 143-145.
Oremland, R.S. and Capone, D.G., 1988. Use of „specific”
inhibitors in biogeochemistry and microbial ecology.
In: Marshall, K.C. (ed), Advances in microbial
ecology, 10, Plenum Press, NY, pp. 285-383.
Orphan, V.J., House, C.H., Hinrichs, K.-U., McKeegan,
K.D. and DeLong, E.F., 2001. Methane-consuming
archaea revealed by directly coupled isotopic and
phylogenetic analysis. Science, 293: 484-487.
Parkes, R.J., Cragg, B.A. and Wellsbury, P., 2000.
Recent studies on bacterial populations and processes in marine sediments: a review. Hydrogeology
Journal, 8: 11-28.
Parkes, J.R., Cragg, B.A., Bale, S.J., Getliff, J.M.,
Goodman, K., Rochell, P.A., Fry, J.C., Weightman, A.J.
and Harvey, S.M., 1994. Deep bacterial biosphere in
Pacific Ocean sediments. Nature, 371: 410-413.
Parkes, R.J., Webster, G., Cragg, B.A., Weightman, A.J.,
Newberry, C.J., Ferdelman, T.G., Kallmeyer, J.,
Jørgensen, B.B., Aiello, I.W., and Fry, J.C., 2005. Deep
sub-seafloor prokaryotes stimulated at interfaces over
geological time. Nature, 436: 390-394.
Postgate, J.R., 1984. The sulfate-reducing bacteria.
Cambridge University Press, London, 151 pp.
Rabus, F., Fukui, M., Wilkes, H. and Widdel, F., 1996.
Degradative capacities and 16S rRNA-targeted
whole-cell hybridization of sulfate-reducing bacteria
in an anaerobic enrichment culture utilizing
alkylbenzenes from crude oil. Applied and
Environmental Microbiology, 62: 3605-3613.
Redfield, A.C., 1958. The biological control of chemical
factors in the environment. American Scientist, 46:
206-222.
Reeburgh, W.S., 1969. Observations of gases in Chesapeake Bay sediments. Limnology and Oceanography,
14: 368-375.
Reimers, C.E., 1987. An in situ microprofiling instrument
for measuring interfacial pore water gradients:
methods and oxygen profiles from the North Pacific
Ocean. Deep-Sea Research, 34: 2019-2035.
Revsbech, N.P., Nielsen, L.P., Christensen, P.B. and
Sørensen, J., 1988. Combined oxygen and nitrous
oxide microsensor for denitrification studies. Applied
and Environmental Microbiology, 54: 2245-2249.
Roden, E.E. and Lovley, D.R., 1993. Evaluation of 55Fe
as a tracer of Fe(III) reduction in aquatic sediments.
Geomicrobiology Journal, 11: 49-56.
Rueter, P., Rabus, R., Wilkes, H., Aeckersberg, F.,
Rainey, F.A., Jannasch, H.W. and Widdel, F., 1994.
Anaerobic oxidation of hydrocarbons in crude oil by
new types of sulphate-reducing bacteria. Nature,
372: 455-458.
Sagemann, J., Jørgensen, B.B. and Greeff, O., 1998.
Temperature dependence and rates of sulfate
Bacteria and Marine Biogeochemistry
204
growth yield in five psychrophilic sulfate-reducing
bacteria from Arctic sediments. Environmental
Microbiology, 1: 457-467.
Knoblauch, C., Sahm, K. and Jørgensen, B.B., 1999.
Psychrophilic sulphate reducing bacteria isolated
from permanently cold arctic marine sediments:
description of Desulfofrigus oceanense gen. nov., sp.
nov., Desulfofrigus fragile sp. nov., Desulfofaba
gelida gen. nov., sp. nov., Desulfotalea psychrophila
gen. nov., sp. nov., and Desulfotalea arctica sp. nov.
Journal of Systematic Bacteriology, 49: 1631-1643.
Koch, A.L., 1990. Diffusion, the crucial process in
many aspects of the biology of bacteria. In:
Marshall, K.C. (ed), Advances in microbial ecology,
11, Plenum, NY, pp. 37-70.
Koch, A.L., 1996. What size should a bacterium be? A
question of scale. Annual Reviews of Microbiology,
50: 317-348.
Krekeler, D. and Cypionka, H., 1995. The preferred
electron acceptor of Desulfovibrio desulfuricans
CSN. FEMS Microbiology Ecology, 17: 271-278.
Krüger, M., Meyerdierks, A., Glöckner, F.O., Amann, R.,
Widdel, F., Kube, M., Reinhardt, R., Kahnt, J.,
Böcher, R., Thauer, R.K. and Shima, S, 2003. A
conspicuous nickel protein in microbial mats that
oxidize methane anaerobically. Nature, 426: 878-881.
Kühl, M. and Revsbech, N.P., 2001. Biogeochemical
microsensors for boundary layer studies. In: Boudreau,
B.P. and Jørgensen, B.B. (eds.), The benthic boundary
layer: transport processes and biogeochemistry.
Oxford University Press, Oxford, pp. 180-210.
Kvenvolden, K.A., 1993. Gas hydrates - geological
perspective and global change. Reviews in Geophysics, 31: 173-187.
Llobet-Brossa, E., Roselló-Mora, R. and Ammann, R.,
1998. Microbial community composition of Wadden
Sea sediments as revealed by fluorescence in situ
hybridization. Applied and Environmental Microbiology, 64: 2691-2696.
Lochte, K. and Turley, C.M., 1988. Bacteria and
cyanobacteria associated with phytodetritus in the
deep sea. Nature, 333: 67-69.
Madigan, M.T., Martinko, J.M. and Parker, J., 1997.
Biology of microorganisms. Prentice Hall, London,
986 pp.
Nauhaus, K., Boetius, A., Krüger, M. and Widdel, F.,
2002. In vitro demonstration of anaerobic oxidation
of methane coupled to sulphate reduction in
sediment from a marine gas hydrate area.
Environmental Microbiology 4: 296-305.
Nielsen, L.P., 1992. Denitrification in sediment
determined from nitrogen isotope pairing. FEMS
Microbiology Ecology, 86: 357-362.
Niewöhner, C., Hensen, C., Kasten, S., Zabel, M. and
Schulz, H.D., 1998. Deep sulfate reduction
completely mediated by anaerobic methane oxidation
in sediments of the upwelling area off Namibia.
Geochimica et Cosmochimica Acta, 62: 455-464.
Oremland, R.S. and Polcin, S., 1982. Methanogenesis and
sulfate reduction: Competitive and noncompetetive
substrates in estuarine sediments. Applied and
Environmental Microbiology, 44: 1270-1276.
Oremland, R.S., Marsh, L.M. and Polcin, S., 1982. Methane
production and simultaneous sulphate reduction in
anoxic saltmarsh sediments. Nature, 296: 143-145.
Oremland, R.S. and Capone, D.G., 1988. Use of „specific”
inhibitors in biogeochemistry and microbial ecology.
In: Marshall, K.C. (ed), Advances in microbial
ecology, 10, Plenum Press, NY, pp. 285-383.
Orphan, V.J., House, C.H., Hinrichs, K.-U., McKeegan,
K.D. and DeLong, E.F., 2001. Methane-consuming
archaea revealed by directly coupled isotopic and
phylogenetic analysis. Science, 293: 484-487.
Parkes, R.J., Cragg, B.A. and Wellsbury, P., 2000.
Recent studies on bacterial populations and processes in marine sediments: a review. Hydrogeology
Journal, 8: 11-28.
Parkes, J.R., Cragg, B.A., Bale, S.J., Getliff, J.M.,
Goodman, K., Rochell, P.A., Fry, J.C., Weightman, A.J.
and Harvey, S.M., 1994. Deep bacterial biosphere in
Pacific Ocean sediments. Nature, 371: 410-413.
Parkes, R.J., Webster, G., Cragg, B.A., Weightman, A.J.,
Newberry, C.J., Ferdelman, T.G., Kallmeyer, J.,
Jørgensen, B.B., Aiello, I.W., and Fry, J.C., 2005. Deep
sub-seafloor prokaryotes stimulated at interfaces over
geological time. Nature, 436: 390-394.
Postgate, J.R., 1984. The sulfate-reducing bacteria.
Cambridge University Press, London, 151 pp.
Rabus, F., Fukui, M., Wilkes, H. and Widdel, F., 1996.
Degradative capacities and 16S rRNA-targeted
whole-cell hybridization of sulfate-reducing bacteria
in an anaerobic enrichment culture utilizing
alkylbenzenes from crude oil. Applied and
Environmental Microbiology, 62: 3605-3613.
Redfield, A.C., 1958. The biological control of chemical
factors in the environment. American Scientist, 46:
206-222.
Reeburgh, W.S., 1969. Observations of gases in Chesapeake Bay sediments. Limnology and Oceanography,
14: 368-375.
Reimers, C.E., 1987. An in situ microprofiling instrument
for measuring interfacial pore water gradients:
methods and oxygen profiles from the North Pacific
Ocean. Deep-Sea Research, 34: 2019-2035.
Revsbech, N.P., Nielsen, L.P., Christensen, P.B. and
Sørensen, J., 1988. Combined oxygen and nitrous
oxide microsensor for denitrification studies. Applied
and Environmental Microbiology, 54: 2245-2249.
Roden, E.E. and Lovley, D.R., 1993. Evaluation of 55Fe
as a tracer of Fe(III) reduction in aquatic sediments.
Geomicrobiology Journal, 11: 49-56.
Rueter, P., Rabus, R., Wilkes, H., Aeckersberg, F.,
Rainey, F.A., Jannasch, H.W. and Widdel, F., 1994.
Anaerobic oxidation of hydrocarbons in crude oil by
new types of sulphate-reducing bacteria. Nature,
372: 455-458.
Sagemann, J., Jørgensen, B.B. and Greeff, O., 1998.
Temperature dependence and rates of sulfate