Improving Marine Algae for Bioenergy 297
Ramanna, L., I. Rawat and F. Bux. 2017. Light enhancement strategies improve microalgal biomass productivity. Renew.
Sust. Energ. Rev. 80: 765–773.
Ramazanov, A. and Z. Ramazanov. 2006. Isolation and characterization of a starchless mutant of Chlorella pyrenoidosa
STL-PI with a high growth rate, and high protein and polyunsaturated fatty acid content. Phycol. Res. 54: 255–259.
Raven, J.A. 2010. Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynth. Res. 106: 123–134.
Raven, J.A. and M. Giordano. 2017. Acquisition and metabolism of carbon in the Ocrophyta other than diatoms. Phil. Trans.
Roy. Soc. B 372: 20160400. doi:10.1098/rstb.2016.0400.
Reinfelder, J.R. 2011. Carbon concentrating mechanisms in eukaryotic marine phytoplankton. Annu. Rev. Mar. Sci. 3: 291–315.
Rosgaard, L., A.J. de Porcellinis, J.H. Jacobsen, N.U. Frigaard and Y. Sakuragi. 2012. Bioengineering of carbon fixation,
biofuels, and biochemicals in cyanobacteria and plants. J. Biotechnol. 162: 134–147.
Ruhle, T., A. Hemschemeier, A. Melis and T. Happe. 2008. A novel screening protocol for the isolation of hydrogen producing
Chlamydomonas reinhardtii strains. BMC. Plant Biol. 8: 107.
Rumpel, S., J. Siebel, C, Far, J. Duan, E. Reijerse, T. Happe, W. Lubitza and M. Winkler. 2014. Enhancing hydrogen production
of microalgae by redirecting electrons from photosystem I to hydrogenase. Energy Environ. Sci. 7: 3296–3301.
Rusch, D.B., A.L. Halpern, G. Sutton, K.B. Heidelberg, S. Williamson, S. Yooseph, D. Wu, J.A. Eisen, J.M. Hoffman, K.
Remington, K. Beeson, B. Tran, H. Smith, H. Baden-Tillson, C. Stewart, J. Thorpe, J. Freeman, C. ndrews-Pfannkoch,
J.E. Venter, K. Li, S. Kravitz, J.F. Heidelberg, T. Utterback, Y.H. Rogers, L.I. Falcon, V. Souza, G. Bonilla-Rosso, L.E.
Eguiarte, D.M. Karl, S. Sathyendranath, T. Platt, E. Bermingham, V. Gallardo, G. Tamayo-Castillo, M.R. Ferrari, R.L.
Strausberg, K. Nealson, R. Friedman, M. Frazier and J.C. Venter. 2007. The sorcerer II global ocean sampling expedition:
northwest Atlantic through eastern tropical Pacific. PLoS. Biol. 5: e77.
Savir, Y., E. Noor, R. Milo and T. Tlusty. 2010. Cross-species analysis traces adaptation of Rubisco toward optimality in a
low-dimensional landscape. Proc. Natl. Acad. Sci. USA 107: 3475–3480.
Schliep, M., B. Crossett, R.D. Willows and M. Chen. 2010.
18
O Labeling of chlorophyll d in Acaryochloris marina reveals
that chlorophyll a and molecular oxygen are precursors. J. Biol. Chem. 285: 28450–28456.
Scoma, A., D. Krawietz, C. Faraloni, L. Giannelli, T. Happe and G. Torzillo. 2012. Sustained H 2 production in a Chlamydomonas
reinhardtii D1 protein mutant. J. Biotechnol. 157: 613–619.
Seo, Y.H., Y. Lee, D.Y. Jeon and J.I. Han. 2015. Enhancing the light utilization efficiency of microalgae using organic dyes.
Bioresour. Technol. 181: 355–359.
Shih, P.M., J. Zarzycki, K.K. Niyogi and C.A. Kerfeld. 2014. Introduction of a synthetic CO 2 -fixing photorespiratory bypass
into a cyanobacterium. J. Biol. Chem. 289: 9493–9500.
Shin, S.E., J.M. Lim, H.G. Koh, E.K. Kim, N.K. Kang, S. Jeon, S. Kwon, W.S. Shin, B. Lee, K. Hwangbo, J. Kim, S.H. Ye,
J.Y. Yun, H. Seo, H.M. Oh, K.J. Kim, J.S. Kim, W.J. Jeong, Y.K. Chang and B.R. Jeong. 2016. CRISPR/Cas9-induced
knockout and knock-in mutations in Chlamydomonas reinhardtii. Sci Rep. 6: 27810. doi:10.1038/srep27810.
Shimogawara, H., S. Fujiwara, A. Grossman and H. Usuda. 1998. High-Efficiency Transformation of Chlamydomonas
reinhardtii by Electroporation. Genetics 148: 1821–1828.
Simionato, D., S. Basso, G.M. Giacometti and T. Morosinotto. 2013. Optimization of light use efficiency for biofuel production
in algae. Biophys. Chem. 182: 71–78
Skizim, N.J., G.M. Ananyev, A. Krishnan and G.C. Dismukes. 2012. Metabolic pathways for photobiological hydrogen
production by nitrogenase- and hydrogenase-containing unicellular cyanobacteria Cyanothece. J. Biol. Chem. 287:
2777–2786.
Son, S.H., J-W. Ahn, T. Uji, D-W. Choi, E-J. Park, M.S. Hwang, J.R. Liu, D. Choi, K. Mikami and W-J. Jeong. 2012.
Development of an expression system using the heat shock protein 70 promoter in the red macroalga, Porphyra tenera.
J. Appl. Phycol. 24: 79–87.
Spalding, M.H. 2008. Microalgal carbon-dioxide-concentrating mechanisms: Chlamydomonas inorganic carbon transporters.
J. Exp. Bot. 59: 1463–1473.
Spolaore, P., C. Joannis-Cassan, E. Duran and A. Isambert. 2006. Commercial applications of microalgae. J. Biosci. Bioeng.
101: 87–96.
Spreitzer, R.J. and M.E. Salvucci. 2002. Rubisco, Structure, regulatory interactions, and possibilities for a better enzyme.
Annu. Rev. Plant. Biol. 53: 449–475.
Srirangan, K., M.E. Pyne and C.C. Perry. 2011. Biochemical and genetic engineering strategies to enhance hydrogen production
in photosynthetic algae and cyanobacteria. Bioresour. Technol. 102: 8589–8604.
Stapleton, J.A. and J.R. Swartz. 2010. A cell-free microtiter plate screen for improved [FeFe] hydrogenases. PLoS One 5: e10554.
Stepanenko, O.V., O.V. Stepanenko, D.M. Shcherbakova, I.M. Kuznetsova, K.K. Turoverov and V.V. Verkhusha. 2011. Modern
fluorescent proteins: from cromophore formation to novel intracellular applications. BioTechniques 51: 313–327.
Stephens, E., I.L. Ross, J.H. Mussgnug, L.D. Wagner, M.A. Borowitzka, C. Posten, O. Kruse and B. Hankamer. 2010. Future
prospects of microalgal biofuel production systems. Trends Plant Sci. 15: 554–564.
Stephenson, P.G., C.M. Moore, M.J. Terry, M.V. Zubkov and T.S. Bibby. 2011. Improving photosynthesis for algal biofuels:
toward a green revolution. Trends Biotechnol. 29: 615–623.
Stripp, S.T., G. Goldet, C. Brandmayr, O. Sanganas, K.A. Vincent, M. Haumann, F.A. Armstrong and T. Happe. 2009. How
oxygen attacks [FeFe] hydrogenases from photosynthetic organisms. Proc. Natl. Acad. Sci USA 106: 17331–17336.
Ramanna, L., I. Rawat and F. Bux. 2017. Light enhancement strategies improve microalgal biomass productivity. Renew.
Sust. Energ. Rev. 80: 765–773.
Ramazanov, A. and Z. Ramazanov. 2006. Isolation and characterization of a starchless mutant of Chlorella pyrenoidosa
STL-PI with a high growth rate, and high protein and polyunsaturated fatty acid content. Phycol. Res. 54: 255–259.
Raven, J.A. 2010. Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynth. Res. 106: 123–134.
Raven, J.A. and M. Giordano. 2017. Acquisition and metabolism of carbon in the Ocrophyta other than diatoms. Phil. Trans.
Roy. Soc. B 372: 20160400. doi:10.1098/rstb.2016.0400.
Reinfelder, J.R. 2011. Carbon concentrating mechanisms in eukaryotic marine phytoplankton. Annu. Rev. Mar. Sci. 3: 291–315.
Rosgaard, L., A.J. de Porcellinis, J.H. Jacobsen, N.U. Frigaard and Y. Sakuragi. 2012. Bioengineering of carbon fixation,
biofuels, and biochemicals in cyanobacteria and plants. J. Biotechnol. 162: 134–147.
Ruhle, T., A. Hemschemeier, A. Melis and T. Happe. 2008. A novel screening protocol for the isolation of hydrogen producing
Chlamydomonas reinhardtii strains. BMC. Plant Biol. 8: 107.
Rumpel, S., J. Siebel, C, Far, J. Duan, E. Reijerse, T. Happe, W. Lubitza and M. Winkler. 2014. Enhancing hydrogen production
of microalgae by redirecting electrons from photosystem I to hydrogenase. Energy Environ. Sci. 7: 3296–3301.
Rusch, D.B., A.L. Halpern, G. Sutton, K.B. Heidelberg, S. Williamson, S. Yooseph, D. Wu, J.A. Eisen, J.M. Hoffman, K.
Remington, K. Beeson, B. Tran, H. Smith, H. Baden-Tillson, C. Stewart, J. Thorpe, J. Freeman, C. ndrews-Pfannkoch,
J.E. Venter, K. Li, S. Kravitz, J.F. Heidelberg, T. Utterback, Y.H. Rogers, L.I. Falcon, V. Souza, G. Bonilla-Rosso, L.E.
Eguiarte, D.M. Karl, S. Sathyendranath, T. Platt, E. Bermingham, V. Gallardo, G. Tamayo-Castillo, M.R. Ferrari, R.L.
Strausberg, K. Nealson, R. Friedman, M. Frazier and J.C. Venter. 2007. The sorcerer II global ocean sampling expedition:
northwest Atlantic through eastern tropical Pacific. PLoS. Biol. 5: e77.
Savir, Y., E. Noor, R. Milo and T. Tlusty. 2010. Cross-species analysis traces adaptation of Rubisco toward optimality in a
low-dimensional landscape. Proc. Natl. Acad. Sci. USA 107: 3475–3480.
Schliep, M., B. Crossett, R.D. Willows and M. Chen. 2010.
18
O Labeling of chlorophyll d in Acaryochloris marina reveals
that chlorophyll a and molecular oxygen are precursors. J. Biol. Chem. 285: 28450–28456.
Scoma, A., D. Krawietz, C. Faraloni, L. Giannelli, T. Happe and G. Torzillo. 2012. Sustained H 2 production in a Chlamydomonas
reinhardtii D1 protein mutant. J. Biotechnol. 157: 613–619.
Seo, Y.H., Y. Lee, D.Y. Jeon and J.I. Han. 2015. Enhancing the light utilization efficiency of microalgae using organic dyes.
Bioresour. Technol. 181: 355–359.
Shih, P.M., J. Zarzycki, K.K. Niyogi and C.A. Kerfeld. 2014. Introduction of a synthetic CO 2 -fixing photorespiratory bypass
into a cyanobacterium. J. Biol. Chem. 289: 9493–9500.
Shin, S.E., J.M. Lim, H.G. Koh, E.K. Kim, N.K. Kang, S. Jeon, S. Kwon, W.S. Shin, B. Lee, K. Hwangbo, J. Kim, S.H. Ye,
J.Y. Yun, H. Seo, H.M. Oh, K.J. Kim, J.S. Kim, W.J. Jeong, Y.K. Chang and B.R. Jeong. 2016. CRISPR/Cas9-induced
knockout and knock-in mutations in Chlamydomonas reinhardtii. Sci Rep. 6: 27810. doi:10.1038/srep27810.
Shimogawara, H., S. Fujiwara, A. Grossman and H. Usuda. 1998. High-Efficiency Transformation of Chlamydomonas
reinhardtii by Electroporation. Genetics 148: 1821–1828.
Simionato, D., S. Basso, G.M. Giacometti and T. Morosinotto. 2013. Optimization of light use efficiency for biofuel production
in algae. Biophys. Chem. 182: 71–78
Skizim, N.J., G.M. Ananyev, A. Krishnan and G.C. Dismukes. 2012. Metabolic pathways for photobiological hydrogen
production by nitrogenase- and hydrogenase-containing unicellular cyanobacteria Cyanothece. J. Biol. Chem. 287:
2777–2786.
Son, S.H., J-W. Ahn, T. Uji, D-W. Choi, E-J. Park, M.S. Hwang, J.R. Liu, D. Choi, K. Mikami and W-J. Jeong. 2012.
Development of an expression system using the heat shock protein 70 promoter in the red macroalga, Porphyra tenera.
J. Appl. Phycol. 24: 79–87.
Spalding, M.H. 2008. Microalgal carbon-dioxide-concentrating mechanisms: Chlamydomonas inorganic carbon transporters.
J. Exp. Bot. 59: 1463–1473.
Spolaore, P., C. Joannis-Cassan, E. Duran and A. Isambert. 2006. Commercial applications of microalgae. J. Biosci. Bioeng.
101: 87–96.
Spreitzer, R.J. and M.E. Salvucci. 2002. Rubisco, Structure, regulatory interactions, and possibilities for a better enzyme.
Annu. Rev. Plant. Biol. 53: 449–475.
Srirangan, K., M.E. Pyne and C.C. Perry. 2011. Biochemical and genetic engineering strategies to enhance hydrogen production
in photosynthetic algae and cyanobacteria. Bioresour. Technol. 102: 8589–8604.
Stapleton, J.A. and J.R. Swartz. 2010. A cell-free microtiter plate screen for improved [FeFe] hydrogenases. PLoS One 5: e10554.
Stepanenko, O.V., O.V. Stepanenko, D.M. Shcherbakova, I.M. Kuznetsova, K.K. Turoverov and V.V. Verkhusha. 2011. Modern
fluorescent proteins: from cromophore formation to novel intracellular applications. BioTechniques 51: 313–327.
Stephens, E., I.L. Ross, J.H. Mussgnug, L.D. Wagner, M.A. Borowitzka, C. Posten, O. Kruse and B. Hankamer. 2010. Future
prospects of microalgal biofuel production systems. Trends Plant Sci. 15: 554–564.
Stephenson, P.G., C.M. Moore, M.J. Terry, M.V. Zubkov and T.S. Bibby. 2011. Improving photosynthesis for algal biofuels:
toward a green revolution. Trends Biotechnol. 29: 615–623.
Stripp, S.T., G. Goldet, C. Brandmayr, O. Sanganas, K.A. Vincent, M. Haumann, F.A. Armstrong and T. Happe. 2009. How
oxygen attacks [FeFe] hydrogenases from photosynthetic organisms. Proc. Natl. Acad. Sci USA 106: 17331–17336.